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Journal of Chemical Physics

Volumn 116, Issue 12, 2002, Pages 5263-5283

Structural and energetic heterogeneity in protein folding. I. Theory

(2) Plotkin, Steven S a Onuchic, José N a

a University of Columbia (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; COMPUTER SIMULATION; CONFORMATIONS; DEGREES OF FREEDOM (MECHANICS); ENTROPY; FREE ENERGY; GLASS TRANSITION; GROUND STATE; HAMILTONIANS; HYDROGEN BONDS; KINETIC THEORY; MONOMERS; MONTE CARLO METHODS; PHASE TRANSITIONS; STATISTICAL MECHANICS;

PROTEIN FOLDING;

PROTEINS;

EID: 0037155413 PISSN: 00219606 EISSN: None Source Type: Journal
DOI: 10.1063/1.1449866 Document Type: Article

Times cited : (33)

References (119)

1
- 0002447909
- edited by D. L. Stein (World Scientific, Singapore)
- (1992) Spin Glasses and Biology , pp. 225-259
- Wolynes, P.G.¹

2
- 0028947257
- (1995) Proteins , vol.21 , pp. 167
- Bryngelson, J.D.¹ Onuchic, J.N.² Socci, N.D.³ Wolynes, P.G.⁴

3
- 0028929556
- (1995) Protein Sci. , vol.4 , pp. 561
- Dill, K.A.¹ Bromberg, S.² Yue, K.³ Fiebig, K.M.⁴ Yec, D.P.⁵ Thomas, P.D.⁶ Chan, H.S.⁷

4
- 0001366381
- (1996) Science , vol.271 , pp. 963
- Ball, K.D.¹ Berry, R.S.² Kunz, R.E.³ Li, F.Y.⁴ Proykova, A.A.⁵ Wales, D.J.⁶

5
- 1842298212
- (1997) Nat. Struct. Biol. , vol.4 , pp. 10
- Dill, K.A.¹ Chan, H.S.²

6
- 0030624384
- (1997) Folding Des. , vol.2 , pp. 1
- Veitshans, T.¹ Klimov, D.² Thirumalai, D.³

7
- 0030628825
- (1997) Annu. Rev. Phys. Chem. , vol.48 , pp. 545
- Onuchic, J.N.¹ Luthey-Schulten, Z.² Wolynes, P.G.³

8
- 0030735693
- (1997) Biophys. J. , vol.73 , pp. 3192
- Pande, V.S.¹ Grosberg, A.Y.² Tanaka, T.³

9
- 0344301982
- (1998) Angew. Chem. Int. Ed. Engl. , vol.37 , pp. 868
- Dobson, C.M.¹ Sali, A.² Karplus, M.³

10
- 0003975020
- edited by A. P. Young (World Scientific, River Edge, NJ)
- (1998) Spin Glasses and Random Fields
- Garel, T.¹ Orland, H.² Pitard, E.³

11
- 0032530847
- (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , pp. 11037
- Brooks, C.L.¹ Gruebele, M.² Onuchic, J.N.³ Wolynes, P.G.⁴

12
- 0003818541
- Freeman, New York
- (1999) Structure and Mechanism in Protein Science, 1st ed.
- Fersht, A.R.¹

13
- 0001022344
- (1999) Annu. Rev. Phys. Chem. , vol.50 , pp. 485
- Gruebele, M.¹

14
- 0033610078
- (1999) Science , vol.285 , pp. 1368
- Wales, D.J.¹ Scheraga, H.A.²

15
- 0034581317
- (2000) Adv. Protein Chem. , vol.53 , pp. 87
- Onuchic, J.N.¹ Nymeyer, H.² Gurcia, A.E.³ Chahine, J.⁴ Socci, N.D.⁵

16
- 0033548553
- (1999) J. Mol. Biol. , vol.286 , pp. 1597
- Ferguson, N.¹ Capaldi, A.P.² James, R.³ Kleanthous, C.⁴ Radford, S.E.⁵

17
- 0032574811
- (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , pp. 4982
- Kim, D.E.¹ Gu, H.² Baker, D.³

18
- 0034620582
- (2000) Biochemistry , vol.39 , pp. 860
- Dalessio, P.M.¹ Ropson, I.J.²

19
- 0028024928
- (1994) Biochemistry , vol.33 , pp. 10026
- Abkevich, V.I.¹ Gutin, A.M.² Shakhnovich, E.I.³

20
- 0030322669
- (1996) Folding Des. , vol.1 , pp. 441
- Onuchic, J.N.¹ Socci, N.D.² Luthey-Schulten, Z.³ Wolynes, P.G.⁴

21
- 0032544484
- (1998) J. Mol. Biol. , vol.282 , pp. 471
- Klimov, D.K.¹ Thirumalai, D.²

22
- 0034112774
- (2000) Nat. Struct. Biol. , vol.7 , pp. 336
- Li, L.¹ Mirny, L.A.² Shakhnovich, E.I.³

23
- 0024733407
- (1989) J. Phys. Chem. , vol.93 , pp. 6902
- Bryngelson, J.D.¹ Wolynes, P.G.²

24
- 0007463680
- (1997) J. Chem. Phys. , vol.106 , pp. 2932
- Plotkin, S.S.¹ Wang, J.² Wolynes, P.G.³

25
- 0030979740
- (1997) Proc. Natl. Acad. Sci. U.S.A. , vol.94 , pp. 6170
- Wolynes, P.G.¹

26
- 0030623529
- (1997) Folding Des. , vol.2 , pp. 115
- Finkelstein, A.V.¹ Badretdinov, A.Y.²

27
- 0023449962
- (1987) Proc. Natl. Acad. Sci. U.S.A. , vol.84 , pp. 7524
- Bryngelson, J.D.¹ Wolynes, P.G.²

28
- 0026663720
- (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.89 , pp. 4918
- Goldstein, R.A.¹ Luthey-Schulten, Z.A.² Wolynes, P.G.³

29
- 0026723063
- (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.89 , pp. 8721
- Leopold, P.E.¹ Montal, M.² Onuchic, J.N.³

30
- 0027234766
- (1993) Proc. Natl. Acad. Sci. U.S.A. , vol.90 , pp. 7195
- Shakhnovich, E.I.¹ Gutin, A.M.²

31
- 0028963362
- (1995) Proc. Natl. Acad. Sci. U.S.A. , vol.92 , pp. 3626
- Onuchic, J.N.¹ Wolynes, P.G.² Luthey-Schulten, Z.³ Socci, N.D.⁴

32
- 13044269058
- (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 10689
- Bornberg-Bauer, E.¹ Chan, H.S.²

33
- 0000945472
- (1999) J. Chem. Phys. , vol.111 , pp. 6599
- Buchler, N.E.G.¹ Goldstein, R.A.²

34
- 85001614667
- Note

35
- 0032502839
- (1998) J. Mol. Biol. , vol.277 , pp. 985
- Plaxco, K.W.¹ Simons, K.T.² Baker, D.³

36
- 0033613165
- (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 11311
- Munoz, V.¹ Eaton, W.A.²

37
- 0034652206
- (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 1525
- Fersht, A.R.¹

38
- 0033613255
- (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 11305
- Alm, E.¹ Baker, D.²

39
- 0033515615
- (1999) J. Mol. Biol. , vol.287 , pp. 675
- Shoemaker, B.A.¹ Wang, J.² Wolynes, P.G.³

40
- 0033613131
- (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 11299
- Galzitskaya, O.V.¹ Finkelstein, A.V.²

41
- 0033607208
- (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 12512
- Shea, J.E.¹ Onuchic, J.N.² Brooks, C.L.³

42
- 0032734515
- (1999) Nat. Struct. Biol. , vol.11 , pp. 1016
- Riddle, D.S.¹ Grantcharova, V.P.² Santiago, J.V.³ Alm, E.⁴ Ruczinski, I.⁵ Baker, D.⁶

43
- 0000007199
- (1999) J. Chem. Phys. , vol.111 , pp. 10375
- Du, R.¹ Pande, V.S.² Grosberg, A.Y.³ Tanaka, T.⁴ Shakhnovich, E.S.⁵

44
- 18344391877
- (1999) Phys. Rev. Lett. , vol.82 , pp. 3372
- Micheletti, C.¹ Banavar, J.R.² Maritan, A.³ Seno, F.⁴

45
- 0034685604
- (2000) J. Mol. Biol. , vol.298 , pp. 937
- Clementi, C.¹ Nymeyer, H.² Onuchic, J.N.³

46
- 0034705115
- (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 5871
- Clementi, C.¹ Jennings, P.A.² Onuchic, J.N.³

47
- 0033987966
- (2000) Biopolymers , vol.53 , pp. 1
- Taverna, D.M.¹ Goldstein, R.A.²

48
- 0034691565
- (2000) Nature (London) , vol.406 , pp. 287
- Maritan, A.¹ Micheletti, C.² Trovato, A.³ Banavar, J.R.⁴

49
- 0034612228
- (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 6509
- Plotkin, S.S.¹ Onuchic, J.N.²

50
- 0031024866
- (1997) Proc. Natl. Acad. Sci. U.S.A. , vol.94 , pp. 777
- Shoemaker, B.A.¹ Wang, J.² Wolynes, P.G.³

51
- 0033515614
- (1999) J. Mol. Biol. , vol.287 , pp. 657
- Shoemaker, B.A.¹ Wolynes, P.G.²

52
- 85001615585
- unpublished
- Plotkin, S.S.¹ Clementi, C.² Onuchic, J.N.³

53
- 0028957666
- (1995) Proc. Natl. Acad. Sci. U.S.A. , vol.92 , pp. 1282
- Gutin, A.M.¹ Abkevich, V.I.² Shakhnovich, E.I.³

54
- 0026751786
- (1992) Nature (London) , vol.358 , pp. 302
- Radford, S.A.¹ Dobson, C.M.² Evans, P.A.³

55
- 0029643523
- (1995) Science , vol.269 , pp. 192
- Bai, Y.¹ Sosnick, T.R.² Mayne, L.³ Englander, S.W.⁴

56
- 0029151245
- (1995) Science , vol.269 , pp. 393
- Boczko, E.M.¹ Brooks, C.L.²

57
- 0031465967
- (1997) Science , vol.278 , pp. 1928
- Lazaridis, T.¹ Karplus, M.²

58
- 0032539561
- (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , pp. 1562
- Sheinerman, F.B.¹ Brooks, C.L.²

59
- 0026511656
- (1992) J. Mol. Biol. , vol.224 , pp. 771
- Fersht, A.R.¹ Matouschek, A.² Serrano, L.³

60
- 0016696599
- (1975) Int. J. Pept. Protein Res. , vol.7 , pp. 445
- Ueda, Y.¹ Taketomi, H.² Go, N.³

61
- 0019569599
- (1981) Biopolymers , vol.20 , pp. 991
- Go, N.¹ Abe, H.²

62
- 0019571422
- (1981) Biopolymers , vol.20 , pp. 1013
- Abe, H.¹ Go, N.²

63
- 0026587310
- (1992) J. Mol. Biol. , vol.224 , pp. 733
- Horovitz, A.¹ Fersht, A.²

64
- 0031259239
- (1997) Physica A , vol.244 , pp. 124
- Hao, M.-H.¹ Scheraga, H.²

65
- 0032437795
- (1998) Folding Des. , vol.3 , pp. 523
- Sorenson, J.M.¹ Head-Gordon, T.²

66
- 0001504441
- (1998) Folding Des. , vol.3 , pp. 127
- Klimov, D.K.¹ Thirumalai, D.²

67
- 0011960339
- (1999) J. Phys. Chem. , vol.103 , pp. 4570
- Lum, K.¹ Chandler, D.² Weeks, J.D.³

68
- 0032606941
- (1999) J. Chem. Phys. , vol.110 , pp. 11616
- Takada, S.¹ Luthey-Schulten, Z.² Wolynes, P.G.³

69
- 0033531714
- (1999) J. Am. Chem. Soc. , vol.121 , pp. 3114
- Prince, R.B.¹ Saven, J.G.² Wolynes, P.G.³ Moore, J.S.⁴

70
- 0029809182
- (1996) Proteins: Struct., Funct., Genet. , vol.26 , pp. 271
- Kolinski, A.¹ Galazka, W.² Skolnick, J.³

71
- 0001115483
- (2001) Proteins , vol.30 , pp. 215
- Eastwood, M.P.¹ Wolynes, P.G.²

72
- 85001711823
- Note

73
- 4243695715
- (1995) Phys. Rev. E , vol.51 , pp. 1791
- Douglas, J.F.¹ Ishinabe, T.²

74
- 0000227308
- (1998) Phys. Rev. Lett. , vol.81 , pp. 5237
- Portman, J.J.¹ Takada, S.² Wolynes, P.G.³

75
- 0001563395
- (1998) J. Chem. Phys. , vol.108 , pp. 334
- Du, R.¹ Pande, V.S.² Grosberg, A.Y.³ Tanaka, T.⁴ Shakhnovich, E.S.⁵

76
- 0003890594
- edited by E. Montroll and J. Lebowitz (North-Holland, Amsterdam)
- (1982) The Liquid State of Matter: Fluids, Simple and Complex
- Percus, J.K.¹

77
- 0004098212
- edited by D. Henderson (Dekker, New York)
- (1992) Fundamentals of Inhomogeneous Fluids
- Evans, R.¹

78
- 0000861193
- edited by C. Domb and J. L. Lebowitz (Academic, New York)
- (1983) Phase Transitions and Critical Phenomena , vol.8 , pp. 267-466
- Gunton, J.D.¹ Miguel, M.S.² Sahni, P.S.³

79
- 0001482745
- (1992) Phys. Rev. A , vol.46 , pp. 5242
- Bohr, H.G.¹ Wolynes, P.G.²

80
- 85001650909
- Note

81
- 85001606557
- Note

82
- 85001872152
- Note

83
- 85001539074
- Note

84
- 0000778903
- (1993) J. Chem. Phys. , vol.98 , pp. 7420
- Kolinski, A.¹ Godzik, A.² Skolnick, J.³

85
- 0000346464
- (1999) Phys. Rev. Lett. , vol.82 , pp. 656
- Vendruscolo, M.¹ Najmanovich, R.² Domany, E.³

86
- 0004056428
- Pergamon, Oxford
- (1980) Statistical Physics, 3rd ed.
- Landau, L.D.¹ Lifshitz, E.M.²

87
- 0030165480
- (1996) Phys. Rev. E , vol.53 , pp. 6271
- Plotkin, S.S.¹ Wang, J.² Wolynes, P.G.³

88
- 0030628053
- (1997) Folding Des. , vol.2 , pp. 109
- Pande, V.S.¹ Grosberg, A.Y.² Tanaka, T.³

89
- 2242482872
- (2000) J. Chem. Phys. , vol.112 , pp. 5223
- Fernández, A.¹ Kostov, K.S.² Berry, R.S.³

90
- 85001575919
- Note

91
- 33947466111
- (1956) J. Am. Chem. Soc. , vol.78 , pp. 5222
- Flory, P.J.¹

92
- 36448999542
- (1994) J. Chem. Phys. , vol.100 , pp. 5290
- Gutin, A.¹ Shakhnovich, E.²

93
- 0031486612
- (1997) Mol. Biol. , vol.31 , pp. 391
- Finkelstein, A.V.¹ Badretdinov, A.Y.²

94
- 0033972919
- (2000) FEBS Lett. , vol.466 , pp. 283
- Berezovsky, I.N.¹ Grosberg, A.Y.² Trifonov, E.N.³

95
- 0001193711
- (1990) J. Chem. Phys. , vol.92 , pp. 3118
- Chan, H.S.¹ Dill, K.A.²

96
- 0027405357
- (1993) Proc. Natl. Acad. Sci. U.S.A. , vol.90 , pp. 1942
- Dill, K.A.¹ Fiebig, K.M.² Chan, H.S.³

97
- 85001649731
- Note

98
- 0000515198
- (1994) J. Phys. Chem. , vol.98 , pp. 4940
- Hao, M.-H.¹ Scheraga, H.A.²

99
- 85001556504
- Note

100
- 0028868995
- (1995) J. Mol. Biol. , vol.254 , pp. 260
- Itzhaki, L.S.¹ Otzen, D.E.² Fersht, A.R.³

101
- 0034681133
- (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 634
- Nymeyer, H.¹ Socci, N.D.² Onuchic, J.N.³

102
- 85001617303
- Note

103
- 4243861085
- (1981) Phys. Rev. B , vol.24 , pp. 2613
- Derrida, B.¹

104
- 85001658955
- Note

105
- 85001667559
- Note

106
- 0001861319
- edited by P. DeBrunner, J. Tsibris, and E. Munck (University of Illinois Press, Urbana, IL)
- (1969) Mossbauer Spectroscopy in Biological Systems , pp. 22-24
- Levinthal, C.¹

107
- 0001482546
- (1998) Phys. Rev. Lett. , vol.80 , pp. 5015
- Plotkin, S.S.¹ Wolynes, P.G.²

108
- 0029010695
- (1995) Biopolymers , vol.36 , pp. 83
- Guo, Z.¹ Thirumalai, D.²

109
- 85001800611
- Note

110
- 0030623698
- (1996) Folding Des. , vol.2 , pp. 23
- Viguera, A.R.¹ Villegas, V.² Aviles, F.X.³ Serrano, L.⁴

111
- 0034685619
- (2000) J. Mol. Biol. , vol.298 , pp. 971
- Kim, D.E.¹ Fisher, C.² Baker, D.³

112
- 0002682169
- (1996) Folding Des. , vol.1 , pp. R71
- Munoz, V.¹ Serrano, L.²

113
- 0029964867
- (1996) Proc. Natl. Acad. Sci. U.S.A. , vol.93 , pp. 11615
- Hagen, S.J.¹ Hofrichter, J.A.² Szabo, A.³ Eaton, W.A.⁴

114
- 0033514919
- (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 1983
- Brown, B.M.¹ Sauer, R.T.²

115
- 0035824886
- (2001) J. Mol. Biol. , vol.314 , pp. 891
- Lindberg, M.O.¹ Tangrot, J.² Otzen, D.E.³ Dolgikh, D.A.⁴ Finkelstein, A.V.⁵ Oliveberg, M.⁶

116
- 0032503027
- (1998) J. Mol. Biol. , vol.277 , pp. 933
- Oliveberg, M.¹ Tan, Y.² Silow, M.³ Fersht, A.⁴

117
- 0030723486
- (1997) Nat. Struct. Biol. , vol.4 , pp. 871
- Wolynes, P.O.¹

118
- 0032554626
- (1998) Biochemistry , vol.37 , pp. 5337
- Burton, R.E.¹ Myers, J.K.² Oas, T.G.³

119
- 0035576033
- (2001) Proteins: Struct., Funct., Genet. , vol.45 , pp. 337
- Plotkin, S.S.¹

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