-
1
-
-
0031799177
-
Selective and stable DNA base pairing without hydrogen bonds
-
Matray,T.J. and Kool,E.T. (1998) Selective and stable DNA base pairing without hydrogen bonds. J. Am. Chem. Soc., 120, 6191-6192.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 6191-6192
-
-
Matray, T.J.1
Kool, E.T.2
-
2
-
-
0033578081
-
A specific partner for abasic damage in DNA
-
Matray,T.J. and Kool,E.T. (1999) A specific partner for abasic damage in DNA. Nature, 399, 704-708.
-
(1999)
Nature
, vol.399
, pp. 704-708
-
-
Matray, T.J.1
Kool, E.T.2
-
3
-
-
0031774216
-
Replication of non-hydrogen bonded bases by DNA polymerases: A mechanism for steric matching
-
Kool,E.T. (1998) Replication of non-hydrogen bonded bases by DNA polymerases: a mechanism for steric matching. Biopolymers, 48, 3-17.
-
(1998)
Biopolymers
, vol.48
, pp. 3-17
-
-
Kool, E.T.1
-
4
-
-
0035997351
-
Active site tightness and substrate fit in DNA replication
-
Kool,E.T. (2002) Active site tightness and substrate fit in DNA replication. Annu. Rev. Biochem., 71, 191-219.
-
(2002)
Annu. Rev. Biochem.
, vol.71
, pp. 191-219
-
-
Kool, E.T.1
-
5
-
-
0031431889
-
6-ethenodeoxyadenosine (EA): Formation of EA base pairs and elongation in defined templates
-
6-ethenodeoxyadenosine (EA): formation of EA base pairs and elongation in defined templates. Carcinogenesis, 18, 1609-1615.
-
(1997)
Carcinogenesis
, vol.18
, pp. 1609-1615
-
-
Litinski, V.1
Chenna, A.2
Sagi, J.3
Singer, B.4
-
7
-
-
0027172892
-
UV irradiation of Escherichia coli modulates mutagenesis at a site-specific ethenocytosine residue on M13 DNA. Evidence for an inducible recA-independent effect
-
Palejwala,V.A., Rzepka,R.W. and Humayun,M.Z. (1993) UV irradiation of Escherichia coli modulates mutagenesis at a site-specific ethenocytosine residue on M13 DNA. Evidence for an inducible recA-independent effect. Biochemistry, 32, 4112-4120.
-
(1993)
Biochemistry
, vol.32
, pp. 4112-4120
-
-
Palejwala, V.A.1
Rzepka, R.W.2
Humayun, M.Z.3
-
9
-
-
0027973376
-
Mutagenic potency of exocyclic DNA adducts: Marked differences between Escherichia coli and simian kidney cells
-
Moriya,M., Zhang,W., Johnson,F. and Grollman,A.P. (1994) Mutagenic potency of exocyclic DNA adducts: marked differences between Escherichia coli and simian kidney cells. Proc. Natl Acad. Sci. USA, 91, 11899-11903.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 11899-11903
-
-
Moriya, M.1
Zhang, W.2
Johnson, F.3
Grollman, A.P.4
-
10
-
-
0025286473
-
2-propanodeoxyguanosine adduct (X) located opposite deoxyadenosine (A) in DNA duplexes at basic pH: Simultaneous partial intercalation of X and A between stacked bases
-
2-propanodeoxyguanosine adduct (X) located opposite deoxyadenosine (A) in DNA duplexes at basic pH: simultaneous partial intercalation of X and A between stacked bases. Biochemistry, 29, 4456-4465.
-
(1990)
Biochemistry
, vol.29
, pp. 4456-4465
-
-
Kouchakdjian, M.1
Eisenberg, M.2
Live, D.3
Marinelli, E.4
Grollman, A.P.5
Patel, D.J.6
-
11
-
-
0029800457
-
4-etheno-2′-deoxycytidine opposite 2′-deoxyadenosine determined by NMR spectroscopy and restrained molecular dynamics
-
4-etheno-2′-deoxycytidine opposite 2′-deoxyadenosine determined by NMR spectroscopy and restrained molecular dynamics. Biochemistry, 35, 13310-13318.
-
(1996)
Biochemistry
, vol.35
, pp. 13310-13318
-
-
Korobka, A.1
Cullinan, D.2
Cosman, M.3
Grollman, A.P.4
Patel, D.J.5
Eisenberg, M.6
de los Santos, C.7
-
12
-
-
0031792598
-
Efficient replication between non-hydrogen-bonded nucleoside shape analogs
-
Morales,J.C. and Kool,E.T. (1998) Efficient replication between non-hydrogen-bonded nucleoside shape analogs. Nature Struct. Biol., 5, 950-954.
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 950-954
-
-
Morales, J.C.1
Kool, E.T.2
-
13
-
-
0031790169
-
Solution structure of a DNA duplex containing a replicable difluorotoluene-adenine pair
-
Guckian,K.M., Krugh,T.R. and Kool,E.T. (1998) Solution structure of a DNA duplex containing a replicable difluorotoluene-adenine pair. Nature Struct. Biol., 5, 954-959.
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 954-959
-
-
Guckian, K.M.1
Krugh, T.R.2
Kool, E.T.3
-
14
-
-
0034718074
-
Molecular dynamics study of oligonucleotides containing difluorotoluene
-
Cubero,E., Laughton,C.A., Luque,F.J. and Orozco,M. (2000) Molecular dynamics study of oligonucleotides containing difluorotoluene J. Am. Chem. Soc., 122, 6891-6899.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 6891-6899
-
-
Cubero, E.1
Laughton, C.A.2
Luque, F.J.3
Orozco, M.4
-
15
-
-
0033598678
-
DNA abasic lesions in a different light: Solution structure of an endogenous topoisomerase II poison
-
Cline,S.D., Jones,W.R., Stone,M.P. and Osheroff,N. (1999) DNA abasic lesions in a different light: solution structure of an endogenous topoisomerase II poison. Biochemistry, 38, 15500-15507.
-
(1999)
Biochemistry
, vol.38
, pp. 15500-15507
-
-
Cline, S.D.1
Jones, W.R.2
Stone, M.P.3
Osheroff, N.4
-
16
-
-
0027953894
-
High-field NMR and restrained molecular modeling studies on a DNA heteroduplex containing a modified apurinic abasic site in the form of covalently linked 9-aminoellipticine
-
Singh,M.P., Hill,G.C., Péoc'h,D., Rayner,B., Imbach,J.-L. and Lown,J.W. (1994) High-field NMR and restrained molecular modeling studies on a DNA heteroduplex containing a modified apurinic abasic site in the form of covalently linked 9-aminoellipticine. Biochemistry, 33, 10271-10285.
-
(1994)
Biochemistry
, vol.33
, pp. 10271-10285
-
-
Singh, M.P.1
Hill, G.C.2
Péoc'h, D.3
Rayner, B.4
Imbach, J.-L.5
Lown, J.W.6
-
17
-
-
0023664684
-
Oligodeoxynucleotides containing synthetic abasic sites. Model substrates for DNA polymerases and apurinic/apyrimidinic endonucleases
-
Takeshita,M., Chang,C.-N., Johnson,F., Will,S. and Grollman,A.P. (1987) Oligodeoxynucleotides containing synthetic abasic sites. Model substrates for DNA polymerases and apurinic/apyrimidinic endonucleases. J. Biol. Chem., 262, 10171-10179.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 10171-10179
-
-
Takeshita, M.1
Chang, C.-N.2
Johnson, F.3
Will, S.4
Grollman, A.P.5
-
18
-
-
0033929124
-
Structure of an 11-mer DNA duplex containing the carbocyclic analog: 2′-deoxyaristeromycin
-
Smirnov,S., Johnson,F., Marumoto,R. and de los Santos,C. (2000) Structure of an 11-mer DNA duplex containing the carbocyclic analog: 2′-deoxyaristeromycin. J. Biomol. Struct. Dynam., 17, 981-991.
-
(2000)
J. Biomol. Struct. Dynam.
, vol.17
, pp. 981-991
-
-
Smirnov, S.1
Johnson, F.2
Marumoto, R.3
de los Santos, C.4
-
19
-
-
2642628181
-
A two-dimensional nuclear Overhauser experiment with pure absorption phase in four quadrants
-
States,D.J., Habekorn,R.A. and Ruben,D.J. (1982) A two-dimensional nuclear Overhauser experiment with pure absorption phase in four quadrants. J. Magn. Res., 48, 286-292.
-
(1982)
J. Magn. Res.
, vol.48
, pp. 286-292
-
-
States, D.J.1
Habekorn, R.A.2
Ruben, D.J.3
-
20
-
-
33845555707
-
Exchangeable proton NMR without base-line distortion, using new strong-pulse sequences
-
Plateau,P. and Gueron,M.(1982) Exchangeable proton NMR without base-line distortion, using new strong-pulse sequences. J. Am. Chem. Soc., 104, 7310-7311.
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 7310-7311
-
-
Plateau, P.1
Gueron, M.2
-
23
-
-
0000299865
-
A new method for refinement of macromolecular structures based on nuclear Overhauser effect spectra
-
Yip,P. and Case,D.A. (1989) A new method for refinement of macromolecular structures based on nuclear Overhauser effect spectra. J. Magn. Reson., 83, 643-648.
-
(1989)
J. Magn. Reson.
, vol.83
, pp. 643-648
-
-
Yip, P.1
Case, D.A.2
-
24
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization and dynamics calculations
-
Brooks,B.R., Buccoleri,R.E., Olafson,B.D., States,D.J., Swaminathan,S. and Karplus,M. (1983) CHARMM: a program for macromolecular energy, minimization and dynamics calculations. J. Comput. Chem., 4, 187-217.
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Buccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
25
-
-
0012581847
-
-
MidasPlus Computer Graphics Laboratory. University of California at San Francisco, CA, USA
-
MidasPlus (1994) Molecular Interactive Display and Simulation. Computer Graphics Laboratory. University of California at San Francisco, CA, USA.
-
(1994)
Molecular Interactive Display and Simulation
-
-
-
26
-
-
0024058085
-
The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids
-
Lavery,R. and Sklenar,H. (1988) The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids. J. Biomol. Struct. Dyn., 6, 655-667.
-
(1988)
J. Biomol. Struct. Dyn.
, vol.6
, pp. 655-667
-
-
Lavery, R.1
Sklenar, H.2
-
27
-
-
84988109709
-
Nucleic acids and nuclear magnetic resonance
-
van de Ven,J.M. and Hilbers,C.W. (1988) Nucleic acids and nuclear magnetic resonance. Eur. J. Biochem., 178, 1-18.
-
(1988)
Eur. J. Biochem.
, vol.178
, pp. 1-18
-
-
van de Ven, J.M.1
Hilbers, C.W.2
-
28
-
-
0002868803
-
Probing DNA structure by NMR spectroscopy
-
In Kool,E. (vol. ed.) and Barton,D., Nakanishi,K. and Meth-Cohn,O. (eds) DNA and Aspects of Molecular Biology. Elsevier Science Ltd., Oxford, UK
-
de los Santos,C. (1999) Probing DNA structure by NMR spectroscopy. In Kool,E. (vol. ed.) and Barton,D., Nakanishi,K. and Meth-Cohn,O. (eds), Comprehensive Natural Products Chemistry, Volume 7. DNA and Aspects of Molecular Biology. Elsevier Science Ltd., Oxford, UK, pp. 55-80.
-
(1999)
Comprehensive Natural Products Chemistry
, vol.7
, pp. 55-80
-
-
de los Santos, C.1
-
29
-
-
0034654495
-
Factors contributing to aromatic stacking in water: Evaluation in the context of DNA
-
Guckian,K.M., Ren,RX, Chaudhuri,N.C., Tahmassebi,D.C. and Kool,E.T. (2000) Factors contributing to aromatic stacking in water: evaluation in the context of DNA. J. Am. Chem. Soc., 122, 2213-2222.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 2213-2222
-
-
Guckian, K.M.1
Ren, R.X.2
Chaudhuri, N.C.3
Tahmassebi, D.C.4
Kool, E.T.5
-
30
-
-
0025821643
-
Structural features of an exocyclic adduct positioned opposite an abasic site in a DNA duplex
-
Kouchakdjian,M., Eisenberg,M., Johnson,F., Grollman,A.P. and Patel,D.J. (1991) Structural features of an exocyclic adduct positioned opposite an abasic site in a DNA duplex. Biochemistry, 30, 3262-3270.
-
(1991)
Biochemistry
, vol.30
, pp. 3262-3270
-
-
Kouchakdjian, M.1
Eisenberg, M.2
Johnson, F.3
Grollman, A.P.4
Patel, D.J.5
-
31
-
-
0023652096
-
An abasic site in DNA. Solution conformation determined by proton NMR and molecular mechanics calculations
-
Cuniasse,Ph., Sowers,L.C., Eritja,R., Kaplan,B., Goodman,N.F., Cognet,J.A.H., LeBret,M., Guschlbauer,W. and Fazakerly,G.V. (1987) An abasic site in DNA. Solution conformation determined by proton NMR and molecular mechanics calculations. Nucleic Acids Res., 15, 8003-8022.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 8003-8022
-
-
Cuniasse, Ph.1
Sowers, L.C.2
Eritja, R.3
Kaplan, B.4
Goodman, N.F.5
Cognet, J.A.H.6
LeBret, M.7
Guschlbauer, W.8
Fazakerly, G.V.9
-
32
-
-
0023845142
-
NMR studies of abasic sites in DNA duplexes: Deoxyadenosine stacks into the helix opposite the cyclic analogue of 2-deoxyribose
-
Kalnick,M.W., Chang,C.N., Grollman,A.P. and Patel,D.J. (1988) NMR studies of abasic sites in DNA duplexes: deoxyadenosine stacks into the helix opposite the cyclic analogue of 2-deoxyribose. Biochemistry, 27, 924-931.
-
(1988)
Biochemistry
, vol.27
, pp. 924-931
-
-
Kalnick, M.W.1
Chang, C.N.2
Grollman, A.P.3
Patel, D.J.4
-
33
-
-
0024599291
-
NMR studies of abasic sites in DNA duplexes: Deoxyadenosine stacks into the helix opposite acyclic lesions
-
Kalnick,M.W., Chang,C.N., Johnson,F., Grollman,A.P. and Patel,D.J. (1989) NMR studies of abasic sites in DNA duplexes: deoxyadenosine stacks into the helix opposite acyclic lesions. Biochemistry, 28, 3373-3383.
-
(1989)
Biochemistry
, vol.28
, pp. 3373-3383
-
-
Kalnick, M.W.1
Chang, C.N.2
Johnson, F.3
Grollman, A.P.4
Patel, D.J.5
-
34
-
-
0025925214
-
Characterization of conformational features of DNA heteroduplexes containing aldehydic abasic sites
-
Withka,J.M., Wilde,J.A., Bolton,P.H., Mazumder,A. and Gerlt,J.A. (1991) Characterization of conformational features of DNA heteroduplexes containing aldehydic abasic sites. Biochemistry, 30, 9931-9940.
-
(1991)
Biochemistry
, vol.30
, pp. 9931-9940
-
-
Withka, J.M.1
Wilde, J.A.2
Bolton, P.H.3
Mazumder, A.4
Gerlt, J.A.5
-
35
-
-
0033577360
-
Minor groove interactions between polymerase and DNA: More essential to replication than Watson-Crick hydrogen bonds?
-
Morales,J.C. and Kool,E.T. (1999) Minor groove interactions between polymerase and DNA: more essential to replication than Watson-Crick hydrogen bonds? J. Am. Chem. Soc., 121, 2323-2324.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 2323-2324
-
-
Morales, J.C.1
Kool, E.T.2
|