-
1
-
-
0033570908
-
Compilation and analysis of sigma(54)-dependent promoter sequences
-
Barrios,H., Valderrama,B. and Morett,E. (1999) Compilation and analysis of sigma(54)-dependent promoter sequences. Nucleic Acids Res., 27, 4305-4313.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 4305-4313
-
-
Barrios, H.1
Valderrama, B.2
Morett, E.3
-
2
-
-
0025361357
-
A bacterial enhancer functions to tether a transcriptional activator near a promoter
-
Wedel,A., Weiss,D.S., Popham,D., Dröge,P. and Kustu,S. (1990) A bacterial enhancer functions to tether a transcriptional activator near a promoter. Science, 248, 486-490.
-
(1990)
Science
, vol.248
, pp. 486-490
-
-
Wedel, A.1
Weiss, D.S.2
Popham, D.3
Dröge, P.4
Kustu, S.5
-
3
-
-
0022446209
-
Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter
-
Reitzer,L.J. and Magasanik,B. (1986) Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter. Cell, 45, 785-792.
-
(1986)
Cell
, vol.45
, pp. 785-792
-
-
Reitzer, L.J.1
Magasanik, B.2
-
4
-
-
0027248437
-
Prokaryotic enhancer-binding proteins reflect eukaryote-like modularity: The puzzle of nitrogen regulatory protein C
-
North,A.K., Klose,K.E., Stedman,K.M. and Kustu,S. (1993) Prokaryotic enhancer-binding proteins reflect eukaryote-like modularity: the puzzle of nitrogen regulatory protein C. J. Bacteriol., 175, 4267-4273.
-
(1993)
J. Bacteriol
, vol.175
, pp. 4267-4273
-
-
North, A.K.1
Klose, K.E.2
Stedman, K.M.3
Kustu, S.4
-
5
-
-
0026003072
-
Control site location and transcriptional regulation in Escherichia coli
-
Collado-Vides,J., Magasanik,B. and Gralla,J.D. (1991) Control site location and transcriptional regulation in Escherichia coli. Microbiol. Rev., 55, 371-394.
-
(1991)
Microbiol. Rev
, vol.55
, pp. 371-394
-
-
Collado-Vides, J.1
Magasanik, B.2
Gralla, J.D.3
-
6
-
-
0030748519
-
Transcriptional activation via DNA-looping: Visualization of intermediates in the activation pathway of E. coli RNA polymerase-sigma 54 holoenzyme by scanning force microscopy
-
Rippe,K., Guthold,M., von Hippel,P.H. and Bustamante,C. (1997) Transcriptional activation via DNA-looping: visualization of intermediates in the activation pathway of E. coli RNA polymerase-sigma 54 holoenzyme by scanning force microscopy. J. Mol. Biol., 270, 125-138.
-
(1997)
J. Mol. Biol
, vol.270
, pp. 125-138
-
-
Rippe, K.1
Guthold, M.2
von Hippel, P.H.3
Bustamante, C.4
-
7
-
-
0033922187
-
Signaling through sigma
-
Gralla,J.D. (2000) Signaling through sigma. Nature Struct. Biol., 7, 530-532.
-
(2000)
Nature Struct. Biol
, vol.7
, pp. 530-532
-
-
Gralla, J.D.1
-
8
-
-
0033912262
-
The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factor
-
Buck,M., Gallegos,M.T., Studholme,D.J., Guo,Y. and Gralla,J.D. (2000) The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factor. J. Bacteriol., 182, 4129-4136.
-
(2000)
J. Bacteriol
, vol.182
, pp. 4129-4136
-
-
Buck, M.1
Gallegos, M.T.2
Studholme, D.J.3
Guo, Y.4
Gralla, J.D.5
-
9
-
-
0035066617
-
Transcriptional regulation at a distance in bacteria
-
Xu,H. and Hoover,T.R. (2001) Transcriptional regulation at a distance in bacteria. Curr. Opin. Microbiol., 4, 138-144.
-
(2001)
Curr. Opin. Microbiol
, vol.4
, pp. 138-144
-
-
Xu, H.1
Hoover, T.R.2
-
10
-
-
0033938884
-
Isomerization of a binary sigma-promoter DNA complex by transcription activators
-
Cannon,W.V., Gallegos,M.T. and Buck,M. (2000) Isomerization of a binary sigma-promoter DNA complex by transcription activators. Nature Struct. Biol., 7, 594-601.
-
(2000)
Nature Struct. Biol
, vol.7
, pp. 594-601
-
-
Cannon, W.V.1
Gallegos, M.T.2
Buck, M.3
-
11
-
-
0031740289
-
Multiple in vivo roles for the -12-region elements of sigma 54 promoters
-
Wang,L. and Gralla J.D. (1998) Multiple in vivo roles for the -12-region elements of sigma 54 promoters. J. Bacteriol., 180, 5626-5631.
-
(1998)
J. Bacteriol
, vol.180
, pp. 5626-5631
-
-
Wang, L.1
Gralla, J.D.2
-
12
-
-
0025012093
-
The integration host factor stimulates interaction of RNA polymerase with NIFA, the transcriptional activator for nitrogen fixation operons
-
Hoover,T.R., Santero,E., Porter,S. and Kustu,S. (1990) The integration host factor stimulates interaction of RNA polymerase with NIFA, the transcriptional activator for nitrogen fixation operons. Cell, 63, 11-22
-
(1990)
Cell
, vol.63
, pp. 11-22
-
-
Hoover, T.R.1
Santero, E.2
Porter, S.3
Kustu, S.4
-
13
-
-
0018963391
-
Analysis of regulation of Klebsiella pneumoniae nitrogen fixation (nif) gene cluster with gene fusions
-
Dixon,R., Eady,R.R., Espin,G., Hill,S., Iaccarino,M., Kahn,D. and Merrick,M. (1980) Analysis of regulation of Klebsiella pneumoniae nitrogen fixation (nif) gene cluster with gene fusions. Nature, 286, 128-132.
-
(1980)
Nature
, vol.286
, pp. 128-132
-
-
Dixon, R.1
Eady, R.R.2
Espin, G.3
Hill, S.4
Iaccarino, M.5
Kahn, D.6
Merrick, M.7
-
14
-
-
0030599011
-
54-dependent promoters on linear templates requires intrinsic or induced bending of the DNA
-
54-dependent promoters on linear templates requires intrinsic or induced bending of the DNA. J. Mol. Biol., 261, 348-356.
-
(1996)
J. Mol. Biol
, vol.261
, pp. 348-356
-
-
Carmona, M.1
Magasanik, B.2
-
16
-
-
0026654521
-
54-dependent Klebsiella pneumoniae nifL promotor in vitro
-
54-dependent Klebsiella pneumoniae nifL promotor in vitro. J. Mol. Biol., 225, 591-607.
-
(1992)
J. Mol. Biol
, vol.225
, pp. 591-607
-
-
Whitehall, S.1
Austin, S.2
Dixon, R.3
-
17
-
-
1842383693
-
Rate-limiting steps in RNA chain initiation
-
McClure,W.R. (1980) Rate-limiting steps in RNA chain initiation. Proc. Natl Acad. Sci. USA, 77, 5634-5638.
-
(1980)
Proc. Natl Acad. Sci. USA
, vol.77
, pp. 5634-5638
-
-
McClure, W.R.1
-
19
-
-
0024449796
-
54 with the Klebsiella pneumoniae and Rhizobium meliloti nifH promoters
-
54 with the Klebsiella pneumoniae and Rhizobium meliloti nifH promoters. J. Mol. Biol., 210, 65-77.
-
(1989)
J. Mol. Biol
, vol.210
, pp. 65-77
-
-
Morret, E.1
Buck, M.2
-
20
-
-
0026764407
-
54-holoenzyme and nifH and nifU promoters of Klebsiella pneumoniae
-
54-holoenzyme and nifH and nifU promoters of Klebsiella pneumoniae. Mol. Microbiol., 6, 1625-1630.
-
(1992)
Mol. Microbiol
, vol.6
, pp. 1625-1630
-
-
Buck, M.1
Cannon, W.2
-
21
-
-
0023225024
-
In vitro transcription of the nitrogen fixation regulatory operon nifLA of Klebsiella pneumoniae
-
Wong,P.K., Popham,D., Keener,J. and Kustu,S. (1987) In vitro transcription of the nitrogen fixation regulatory operon nifLA of Klebsiella pneumoniae. J. Bacteriol., 169, 2876-2880.
-
(1987)
J. Bacteriol
, vol.169
, pp. 2876-2880
-
-
Wong, P.K.1
Popham, D.2
Keener, J.3
Kustu, S.4
-
22
-
-
0024449642
-
Transcriptional activation of the Klebsiella pneumoniae nifLA promoter by NTRC is face-of-the-helix dependent and the activator stabilizes the interaction of sigma 54-RNA polymerase with the promoter
-
Minchin,S.D., Austin,S. and Dixon,R.A. (1989) Transcriptional activation of the Klebsiella pneumoniae nifLA promoter by NTRC is face-of-the-helix dependent and the activator stabilizes the interaction of sigma 54-RNA polymerase with the promoter. EMBO J., 8, 3491-3499.
-
(1989)
EMBO J
, vol.8
, pp. 3491-3499
-
-
Minchin, S.D.1
Austin, S.2
Dixon, R.A.3
-
23
-
-
0025735568
-
Influence of a mutation in the putative nucleotide binding site of the nitrogen regulatory protein NTRC on its positive control function
-
Austin,S., Kundrot,C. and Dixon,R. (1991) Influence of a mutation in the putative nucleotide binding site of the nitrogen regulatory protein NTRC on its positive control function. Nucleic Acids Res., 19, 2281-2287.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 2281-2287
-
-
Austin, S.1
Kundrot, C.2
Dixon, R.3
-
24
-
-
0000097521
-
Prokaryotic transcriptional enhancers
-
McKnight,S.L. and Yamamoto,K.R. (eds), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Weiss,D.S., Klose,K.E., Hoover,T.R., North,A.K., Porter,S.C., Wedel,A.B. and Kustu,S. (1992) Prokaryotic transcriptional enhancers. In McKnight,S.L. and Yamamoto,K.R. (eds), Transcriptional Regulation. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, Vol. 2, pp. 667-694.
-
(1992)
Transcriptional Regulation
, vol.2
, pp. 667-694
-
-
Weiss, D.S.1
Klose, K.E.2
Hoover, T.R.3
North, A.K.4
Porter, S.C.5
Wedel, A.B.6
Kustu, S.7
-
25
-
-
0032520644
-
DNA binding and oligomerization of NtrC studied by fluorescence anisotropy and fluorescence correlation spectroscopy
-
Sevenich,F.W., Langowski,J., Weiss,V. and Rippe,K. (1998) DNA binding and oligomerization of NtrC studied by fluorescence anisotropy and fluorescence correlation spectroscopy. Nucleic Acids Res., 26, 1373-1381.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1373-1381
-
-
Sevenich, F.W.1
Langowski, J.2
Weiss, V.3
Rippe, K.4
-
26
-
-
0032557498
-
Association states of the transcription activator protein NtrC from E. coli determined by analytical ultracentrifugation
-
Rippe,K., Mücke,N. and Schulz,A. (1998) Association states of the transcription activator protein NtrC from E. coli determined by analytical ultracentrifugation. J. Mol. Biol., 278, 915-933.
-
(1998)
J. Mol. Biol
, vol.278
, pp. 915-933
-
-
Rippe, K.1
Mücke, N.2
Schulz, A.3
-
27
-
-
0026729012
-
Specific binding of the transcription factor sigma-54 to promoter DNA
-
Buck,M. and Cannon,W. (1992) Specific binding of the transcription factor sigma-54 to promoter DNA. Nature, 358, 422-424.
-
(1992)
Nature
, vol.358
, pp. 422-424
-
-
Buck, M.1
Cannon, W.2
-
28
-
-
0000935271
-
54-dependent promoters
-
Conaway,R.C. and Conaway,J.W. (eds), Raven Press, New York, NY
-
54-dependent promoters. In Conaway,R.C. and Conaway,J.W. (eds), Transcription: Mechanism and Regulation. Raven Press, New York, NY, pp. 323-342.
-
(1994)
Transcription: Mechanism and Regulation
, pp. 323-342
-
-
Atkinson, M.R.1
Ninfa, A.J.2
-
29
-
-
0001301977
-
Polarisation de la lumière de fluorescence. Vie moyenne des molécules dans l'état excité
-
Perrin,F. (1926) Polarisation de la lumière de fluorescence. Vie moyenne des molécules dans l'état excité. J. Phys. Radiat. V Ser. 6, 7, 390-401.
-
(1926)
J. Phys. Radiat. V Ser
, vol.6
, Issue.7
, pp. 390-401
-
-
Perrin, F.1
-
30
-
-
0025261344
-
Application of fluorescence energy transfer and polarization to monitor Escherichia coli cAMP receptor protein and lac promoter interaction
-
Heyduk,T. and Lee J.C. (1990) Application of fluorescence energy transfer and polarization to monitor Escherichia coli cAMP receptor protein and lac promoter interaction. Proc. Natl Acad. Sci. USA, 87, 1744-1748.
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 1744-1748
-
-
Heyduk, T.1
Lee, J.C.2
-
31
-
-
0027327859
-
CAP interacts with RNA polymerase in solution in the absence of promoter DNA
-
Heyduk,T., Lee J.C., Ebright,Y.W., Blatter,E.E., Zhou,Y. and Ebright,R.H. (1993) CAP interacts with RNA polymerase in solution in the absence of promoter DNA. Nature, 364, 548-549.
-
(1993)
Nature
, vol.364
, pp. 548-549
-
-
Heyduk, T.1
Lee, J.C.2
Ebright, Y.W.3
Blatter, E.E.4
Zhou, Y.5
Ebright, R.H.6
-
32
-
-
0027214299
-
Fluorescence anisotropy assays implicate protein-protein interactions in regulating trp repressor DNA binding
-
LeTilly,V. and Royer,C.A. (1993) Fluorescence anisotropy assays implicate protein-protein interactions in regulating trp repressor DNA binding. Biochemistry, 32, 7753-7758.
-
(1993)
Biochemistry
, vol.32
, pp. 7753-7758
-
-
LeTilly, V.1
Royer, C.A.2
-
33
-
-
0025790430
-
Interaction of DNA with the Klenow fragment of DNA polymerase I studied by time-resolved fluorescence spectroscopy
-
Guest,C.R., Hochstrasser,R.A., Dupuy,C.G., Allen,D.J., Benkovic,S.J. and Millar,D.P. (1991) Interaction of DNA with the Klenow fragment of DNA polymerase I studied by time-resolved fluorescence spectroscopy. Biochemistry, 30, 8759-8770.
-
(1991)
Biochemistry
, vol.30
, pp. 8759-8770
-
-
Guest, C.R.1
Hochstrasser, R.A.2
Dupuy, C.G.3
Allen, D.J.4
Benkovic, S.J.5
Millar, D.P.6
-
34
-
-
0031592940
-
Affinity and specificity of trp repressor-DNA interactions studied with fluorescent oligonucleotides
-
Reedstrom,R.J., Brown,M.P., Grillo,A., Roen,D. and Royer,C.A. (1997) Affinity and specificity of trp repressor-DNA interactions studied with fluorescent oligonucleotides. J. Mol. Biol., 273, 572-585.
-
(1997)
J. Mol. Biol
, vol.273
, pp. 572-585
-
-
Reedstrom, R.J.1
Brown, M.P.2
Grillo, A.3
Roen, D.4
Royer, C.A.5
-
35
-
-
0034235830
-
Quantitative characterization of the interaction between purified human estrogen receptor alpha and DNA using fluorescence anisotropy
-
Boyer,M., Poujol,N., Margeat,E. and Royer,C.A. (2000) Quantitative characterization of the interaction between purified human estrogen receptor alpha and DNA using fluorescence anisotropy. Nucleic Acids Res., 28, 2494-2502.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 2494-2502
-
-
Boyer, M.1
Poujol, N.2
Margeat, E.3
Royer, C.A.4
-
36
-
-
0001791265
-
Analysis of protein and DNA-mediated contributions to cooperative assembly of protein-DNA complexes
-
Senear,D.F., Ross J.B. and Laue,T.M. (1998) Analysis of protein and DNA-mediated contributions to cooperative assembly of protein-DNA complexes. Methods, 16, 3-20.
-
(1998)
Methods
, vol.16
, pp. 3-20
-
-
Senear, D.F.1
Ross, J.B.2
Laue, T.M.3
-
37
-
-
0031776135
-
Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: A practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects and osmotic effects of salts
-
Record,M.T.,Jr, Zhang,W. and Anderson,C.F. (1998) Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects and osmotic effects of salts. Adv. Protein Chem., 51, 281-353.
-
(1998)
Adv. Protein Chem
, vol.51
, pp. 281-353
-
-
Record M.T., Jr.1
Zhang, W.2
Anderson, C.F.3
-
38
-
-
0022997581
-
Deletion loop mutagenesis of the nifL promoter from Klebsiella pneumoniae: Role of the -26 to -12 region in promoter function
-
Khan,H., Buck,M. and Dixon,R. (1986) Deletion loop mutagenesis of the nifL promoter from Klebsiella pneumoniae: role of the -26 to -12 region in promoter function. Gene, 45, 281-288.
-
(1986)
Gene
, vol.45
, pp. 281-288
-
-
Khan, H.1
Buck, M.2
Dixon, R.3
-
39
-
-
0019330818
-
Binding of Escherichia coli ribonucleic acid polymerase holoenzyme to a bacteriophage T7 promoter-containing fragment: Evaluation of promoter binding constants as a function of solution conditions
-
Strauss,H.S., Burgess,R.R. and Record,M.T.,Jr (1980) Binding of Escherichia coli ribonucleic acid polymerase holoenzyme to a bacteriophage T7 promoter-containing fragment: evaluation of promoter binding constants as a function of solution conditions. Biochemistry, 19, 3504-3515.
-
(1980)
Biochemistry
, vol.19
, pp. 3504-3515
-
-
Strauss, H.S.1
Burgess, R.R.2
Record M.T., Jr.3
-
40
-
-
0020262656
-
Ion effects on the aggregation and DNA-binding reactions of Escherichia coli RNA polymerase
-
Shaner,S.L., Melancon,P., Lee,K.S., Burgess,R.R. and Record,M.T.,Jr (1983) Ion effects on the aggregation and DNA-binding reactions of Escherichia coli RNA polymerase. Cold Spring Harb. Symp. Quant. Biol., 47, 463-472.
-
(1983)
Cold Spring Harb. Symp. Quant. Biol
, vol.47
, pp. 463-472
-
-
Shaner, S.L.1
Melancon, P.2
Lee, K.S.3
Burgess, R.R.4
Record M.T., Jr.5
-
41
-
-
2042475515
-
Nonspecific DNA binding of genome-regulating proteins as a biological control mechanism: Measurement of DNA-bound Escherichia coli lac repressor in vivo
-
Kao-Huang,Y., Revzin,A., Butler,A.P., O'Conner,P., Noble,D.W. and von Hippel,P.H. (1977) Nonspecific DNA binding of genome-regulating proteins as a biological control mechanism: measurement of DNA-bound Escherichia coli lac repressor in vivo. Proc. Natl Acad. Sci. USA, 74, 4228-4232.
-
(1977)
Proc. Natl Acad. Sci. USA
, vol.74
, pp. 4228-4232
-
-
Kao-Huang, Y.1
Revzin, A.2
Butler, A.P.3
O'Conner, P.4
Noble, D.W.5
von Hippel, P.H.6
-
42
-
-
0026409841
-
Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity. Implications for protein-DNA interactions in vivo
-
Cayley,S., Lewis,B.A., Guttman,H.J. and Record,M.T.,Jr (1991) Characterization of the cytoplasm of Escherichia coli K-12 as a function of external osmolarity. Implications for protein-DNA interactions in vivo. J. Mol. Biol., 222, 281-300.
-
(1991)
J. Mol. Biol
, vol.222
, pp. 281-300
-
-
Cayley, S.1
Lewis, B.A.2
Guttman, H.J.3
Record M.T., Jr.4
-
43
-
-
0028960228
-
Inhibition of transcription initiation by lac repressor
-
Schlax,P.J., Capp,M.W. and Record,M.T.,Jr (1995) Inhibition of transcription initiation by lac repressor. J. Mol. Biol., 245, 331-350.
-
(1995)
J. Mol. Biol
, vol.245
, pp. 331-350
-
-
Schlax, P.J.1
Capp, M.W.2
Record M.T., Jr.3
-
44
-
-
0024598928
-
Function of a bacterial activator protein that binds to transcriptional enhancers
-
Popham,D.L., Szeto,D., Keener J. and Kustu,S. (1989) Function of a bacterial activator protein that binds to transcriptional enhancers. Science, 243, 629-635.
-
(1989)
Science
, vol.243
, pp. 629-635
-
-
Popham, D.L.1
Szeto, D.2
Keener, J.3
Kustu, S.4
-
46
-
-
0017146579
-
Ion effects on ligand-nucleic acid interactions
-
Record,M.T.Jr, Lohman,M.L. and De Haseth,P. (1976) Ion effects on ligand-nucleic acid interactions. J. Mol. Biol., 107, 145-158.
-
(1976)
J. Mol. Biol
, vol.107
, pp. 145-158
-
-
Record M.T., Jr.1
Lohman, M.L.2
De Haseth, P.3
-
47
-
-
0026808625
-
Thermodynamics of ligand-nucleic acid interactions
-
Lohman,T.M. and Mascotti,D.P. (1992) Thermodynamics of ligand-nucleic acid interactions. Methods Enzymol., 212, 400-425.
-
(1992)
Methods Enzymol
, vol.212
, pp. 400-425
-
-
Lohman, T.M.1
Mascotti, D.P.2
-
49
-
-
0026792836
-
54-dependent nifH promoter
-
54-dependent nifH promoter. J. Mol. Biol., 227, 602-620.
-
(1992)
J. Mol. Biol
, vol.227
, pp. 602-620
-
-
Santero, E.1
Hoover, T.R.2
North, A.K.3
Berger, D.K.4
Porter, S.C.5
Kustu, S.6
-
50
-
-
0032881569
-
A- and T-tract-mediated intrinsic curvature in native DNA between the binding site of the upstream activator NtrC and the nifLA promoter of Klebsiella pneumoniae facilitates transcription
-
Cheema,A.K., Choudhury,N.R. and Das,H.K. (1999) A- and T-tract-mediated intrinsic curvature in native DNA between the binding site of the upstream activator NtrC and the nifLA promoter of Klebsiella pneumoniae facilitates transcription. J. Bacteriol., 181, 5296-5302.
-
(1999)
J. Bacteriol
, vol.181
, pp. 5296-5302
-
-
Cheema, A.K.1
Choudhury, N.R.2
Das, H.K.3
-
51
-
-
0028150930
-
Geometry of the process of transcription activation at the σ54-dependent nifH promoter of Klebsiella pneumoniae
-
Molina-López,J.A., Govantes,F. and Santero,E. (1994) Geometry of the process of transcription activation at the σ54-dependent nifH promoter of Klebsiella pneumoniae. J. Biol. Chem., 269, 25419-25425.
-
(1994)
J. Biol. Chem
, vol.269
, pp. 25419-25425
-
-
Molina-López, J.A.1
Govantes, F.2
Santero, E.3
|