Characterization of the rat RALDH1 promoter - A functional CCAAT and octamer motif are critical for basal promoter activity

Biochimica et Biophysica Acta - Gene Structure and Expression

Volumn 1579, Issue 2-3, 2002, Pages 81-91

  Guimond, Julie ^a   Devost, Dominic ^a   Brodeur, Helene ^a   Mader, Sylvie ^a,b   Bhat, Pangala V ^a  

^a CENTRE HOSPITALIER DE L UNIVERSITÉ DE MONTRÉAL   (Canada)

^b UNIVERSITÉ DE MONTRÉAL   (Canada)

Author keywords

Retinal dehydrogenase; Retinoic acid; Transcription factor

Indexed keywords

CCAAT BINDING FACTOR; CELL EXTRACT; CIS ACTING ELEMENT; LUCIFERASE; OXIDOREDUCTASE; RETINAL DEHYDROGENASE TYPE 1; TRANSCRIPTION FACTOR AP 1; TRANSCRIPTION FACTOR SP1; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; BINDING SITE; CELL NUCLEUS; DNA FLANKING REGION; EMBRYO; FIBROBLAST; GEL MOBILITY SHIFT ASSAY; GENE ACTIVATION; GENE ACTIVITY; GENE CONSTRUCT; GENE CONTROL; GENE DELETION; GENE MUTATION; GENE SEQUENCE; GENETIC TRANSFECTION; HUMAN; HUMAN CELL; KIDNEY CELL; KIDNEY EPITHELIUM; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN MOTIF; RAT; SITE DIRECTED MUTAGENESIS; SWINE; TRANSCRIPTION REGULATION;

5' FLANKING REGION; ALDEHYDE OXIDOREDUCTASES; ANIMALS; BASE SEQUENCE; CCAAT-BINDING FACTOR; CELL LINE; DNA-BINDING PROTEINS; ELECTROPHORETIC MOBILITY SHIFT ASSAY; GENE EXPRESSION REGULATION, ENZYMOLOGIC; HUMANS; MOLECULAR SEQUENCE DATA; OCTAMER TRANSCRIPTION FACTOR-2; PROMOTER REGIONS (GENETICS); RATS; RETINAL DEHYDROGENASE; SWINE; TRANSCRIPTION FACTORS; TRANSCRIPTION INITIATION SITE;

EID: 0037069760     PISSN: 01674781     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-4781(02)00510-9     Document Type: Article

References (39)

1. Hofmann C., Eichele G. Retinoids in development. Sporn M.B., Roberts A.B., Goodman D.S. The Retinoids: Biology, Chemistry and Medicine. 2nd ed. 1994;387-441 Raven, New York.
2. Maden M. Role of retinoids in embryonic development. Blomhoff R. Vitamin A in Health and Disease. 1994;289-322 Marcel Dekker, New York.
3. Rosenthal D., Lancillotti F., Darwiche N., Sinha R., De Luca L.M. Regulation of epithelial differentiation by retinoids. Blomhoff R. Vitamin A in Health and Disease. 1994;425-450 Marcel Dekker, New York.
4. Chambon P. A decade of molecular biology of retinoic acid receptors. FASEB J. 10:1996;940-954.
5. Mangelsdorf D.J., Umesono K., Evans R.M. The retinoid receptors. Sporn M.B., Roberts A.B., Goodman D.S. The Retinoids: Biology, Chemistry and Medicine. 2nd ed. 1994;319-349 Raven, New York.
6. Duester G. Families of retinoid dehydrogenases regulating vitamin A function. Production of visual pigment and retinoic acid. Eur. J. Biochem. 267:2000;4315-4324.
7. Labrecque J., Bhat P.V., Lacroix A. Purification and partial characterization of a rat kidney aldehyde dehydrogenase that oxidizes retinal to retinoic acid. Biochem. Cell Biol. 71:1993;85-89.
8. Bhat P.V., Labrecque J., Boutin J.-M., Lacroix A., Yoshida A. Cloning of a cDNA encoding rat aldehyde dehydrogenase with high activity for retinal oxidation. Gene. 166:1995;303-306.
9. Labrecque J., Dumas F., Lacroix A., Bhat P.V. A novel isoenzyme of aldehyde dehydrogenase specifically involved in the biosynthesis of 9-cis and all-trans retinoic acid. Biochem. J. 305:1995;681-684.
10. Bhat P.V., Marcinkiewicz M., Li Y., Mader S. Changing patterns of renal retinal dehydrogenase expression parallel nephron development in the rat. J. Histochem. Cytochem. 46:1998;1025-1032.
11. Bhat P.V. Retinal dehydrogenase gene expression in stomach and small intestine of rats during postnatal development and in vitamin A deficiency. FEBS Lett. 426:1998;260-262.
12. Bhat P.V., Bader T., Nettesheim P., Jetten A.M. Differentiation-dependent regulation of retinal dehydrogenase gene expression in the trachea. Biochem. Cell Biol. 76:1998;59-62.
13. Chen B., Przbyla A.E. An efficient site-directed mutagenesis method based on PCR. BioTechniques. 17:1994;657-659.
14. Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.G., Smith J.A., Struhl K. Current Protocols in Molecular Biology. 5th ed. 1999;9.1.1-9.2.6 Wiley, New York.
15. Dignam J.D., Lebovitz R.M., Roeder R.G. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res. 11:1983;1475-1489.
16. Dunn T.J., Koleske A.J., Lindahl R., Pitot H.C. Phenobarbital-induced aldehyde dehydrogenase in the rat: cDNA sequence and regulation of the mRNA by phenobarbital in responsive rats. J. Biol. Chem. 263:1989;13057-13065.
17. Montplaisir V., Chow Lan N., Guimond J., Savineau C., Bhat P.V., Mader S. Recombinant class I aldehyde dehydrogenases specific for all-trans or 9-cis retinal. J. Biol. Chem. 277:2002;17486-17492.
18. Rongnoparut P., Weaver S. Isolation and characterization of a cytosolic aldehyde dehydrogenase-encoding cDNA from mouse liver. Gene. 101:1991;261-265.
19. Yanagawa Y., Chen J.C., Hsu L.C., Yoshida A. The transcriptional regulation of human aldehyde dehydrogenase I gene. The structural and functional analysis of the promoter. J. Biol. Chem. 270:1995;17521-17527.
20. H.L. Ang, G. Duester, Initiation of retinoid signaling in primitive streak mouse embryos: Spatiotemporal expression patterns of receptors and metabolic enzymes, Dev. Dyn. 215 (1999) 264-272.
21. Godbout R., Packer M., Poppema S., Dabbagh L. Localization of cytosolic aldehyde dehydrogenase in the developing chick retina: in situ hybridization and immunohistochemical analyses. Dev. Dyn. 205:1996;319-331.
22. McCaffery P., Lee M.O., Wagner M.A., Sladek N.E., Drager U.C. Changing pattern of retinoic acid system in the developing retina. Dev. Biol. 158:1993;390-399.
23. Zhai Y., Sperkova Z., Napoli J.L. Cellular expression of retinal dehydrogenase types 1 and 2: effects of vitamin A status on testis mRNA. J. Cell. Physiol. 186:2001;220-232.
24. Elizondo G., Corchero J., Sterneck E., Gonzalez J. Feedback inhibition of the retinaldehyde dehydrogenase gene ALDH1 by retinoic acid through retinoic acid receptor alpha and CCAAT/enhancer-binding protein beta. J. Biol. Chem. 275:2000;39747-39753.
25. Godbout R., Monckton E.A. Differential regulation of the aldehyde dehydrogenase 1 gene in embryonic chick retina and liver. J. Biol. Chem. 276:2001;32896-32904.
26. Maity S.N., Crombrugghe B.D. Role of the CCAAT-binding protein CBF/NF-Y in transcription. TIBS. 23:1998;174-178.
27. Matuoka K., Chen K.U. Nuclear factor Y (NF-Y) and cellular senescence. Exp. Cell Res. 253:1999;365-371.
28. Sturm R.A., Das G., Herr W. The ubiquitous octamer-binding protein Oct-1 contains a POU domain with a homeo box subdomain. Genes Dev. 2:1998;1582-1599.
29. Fletcher C., Heintz N., Roeder R.G. Purification and characterization of OTF-1, a transcription factor regulating cell cycle expression of a human histone H2b gene. Cell. 51:1987;773-781.
30. Labella F., Sive H.L., Roeder R.G., Heintz N. Cell-cycle regulation of a human histone H2b gene is mediated by the H2b subtype-specific consensus element. Genes Dev. 2:1988;32-39.
31. Murphy S., Pierani A., Scheidereit C., Melli M., Roeder R.G. Purified octamer binding transcription factors stimulate RNA polymerase III-mediated transcription of the 7SK RNA gene. Cell. 59:1989;1071-1081.
32. Jenuwein T., Grosschedl R. Complex pattern of immunoglobulin mu gene expression in normal and transgenic mice: nonoverlapping regulatory sequences govern distinct tissue specificities. Genes Dev. 5:1991;932-943.
33. Fadel B.M., Boutet S.C., Quertermous T. Octamer-dependent in vivo expression of the endothelial cell-specific TIE2 gene. J. Biol. Chem. 274:1999;20376-20383.
34. Schwachtgen J.L., Remacle J.E., Janel N., Brys R., Huylebroeck D., Meyer D., Kerbiriou-Nabias D. Oct-1 is involved in the transcriptional repression of the von Willebrand factor gene promoter. Blood. 92:1998;1247-1258.
35. Roberts S.B., Segil N., Heintz N. Differential phosphorylation of the transcription factor Oct-1 during the cell cycle. Science. 253:1991;1022-1026.
36. Wright K.L., Moore T.L., Vilen B.J., Brown A.M., Ting J.P.-Y. Major histocompatibility complex class II-associated invariant chain gene expression is up-regulated by cooperative interactions of Sp1 and NF-Y. J. Biol. Chem. 270:1995;20978-20986.
37. Ericsson J., Jackson S.M., Edwards P.A. Synergistic binding of sterol regulatory element-binding protein and NF-Y to the farnesyl diphosphate synthase promoter is critical for sterol-regulated expression of the gene. J. Biol. Chem. 271:1996;24359-24364.
38. Courey A.J., Holtzman D.A., Jackson S.P., Tjian R. Synergistic activation by the glutamine-rich domains of human transcription factor Sp1. Cell. 59:1989;827-836.
39. Van Ginkel P.R., Hsiao K., Schjerven H., Farnham P.J. E2F-mediated growth regulation requires transcription factor cooperation. J. Biol. Chem. 272:1997;18367-18374.