Substrate requirements for secondary cleavage by HIV-1 reverse transcriptase RNase H

Journal of Biological Chemistry

Volumn 277, Issue 32, 2002, Pages 28400-28410

  Wisniewski, Michele ^a   Chen, Yan ^a   Balakrishnan, Mini ^a   Palaniappan, Chockalingam ^a,c   Roques, Bernard P ^b   Fay, Philip J ^a   Bambara, Robert A ^a  

^a UNIVERSITY OF ROCHESTER MEDICAL CENTER   (United States)

^b Laboratoire de Pharmacochimie   (France)

^c University of Rochester Medical Center ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; GENES; NUCLEIC ACIDS; POLYMERIZATION; PROTEINS; RNA; SUBSTRATES; SYNTHESIS (CHEMICAL);

HUMAN IMMUNODEFICIENCY VIRUS (HIV); NUCLEOTIDES; REVERSE TRANSCRIPTASE (RT); RNA GENOME;

ENZYMES;

RNA DIRECTED DNA POLYMERASE; RIBONUCLEASE H;

ARTICLE; CONTROLLED STUDY; DNA SYNTHESIS; DNA TRANSFER; ENZYME ACTIVITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA CLEAVAGE; RNA STRUCTURE; TERMINAL SEQUENCE; CHEMISTRY; ENZYME SPECIFICITY; GENETIC TRANSCRIPTION; KINETICS; METABOLISM; MOLECULAR GENETICS; PROTEIN CONFORMATION; PROTEIN SECONDARY STRUCTURE; TIME;

HUMAN IMMUNODEFICIENCY VIRUS 1;

BASE SEQUENCE; HIV-1 REVERSE TRANSCRIPTASE; KINETICS; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; RIBONUCLEASE H, CALF THYMUS; SUBSTRATE SPECIFICITY; TIME FACTORS; TRANSCRIPTION, GENETIC;

EID: 0037047329     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M201645200     Document Type: Article

References (42)

1. Champoux, J. J. (1993) in Reverse Transcriptase (Skalka, A. M., and Goff, S. P., eds) pp. 103-117, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
2. Telesnitsky, A., and Goff, A. P. (1993) in Reverse Transcriptase (Skalka, A. M., and Goff, S. P., eds) pp. 49-83, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
3. di Marzo Veronese, F., Copeland, T. D., DeVico, A. L., Rahman, R., Oroszlan, S., Gallo, R. C., and Sarngadharan, M. G. (1986) Science 231, 1289-1291
4. Lightfoote, M. M., Coligan, J. E., Folks, T. M., Fauci, A. S., Martin, M. A., and Venkatesan, S. (1986) J. Virol. 60, 771-775
5. Jacobo-Molina, A., and Arnold, E. (1991) Biochemistry 30, 6351-6356
6. Gopalakrishnan, V., Peliska, J. A., and Benkovic, S. J. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 10763-10767
7. Gotte, M., Maier, G., Gross, H. J., and Heumann, H. (1998) J. Biol. Chem. 273, 10139-10146
8. Jacobo-Molina, A., Ding, J., Nanni, R. G., Clark, A. D., Jr., Lu, X., Tantillo, C., Williams, R. L., Kamer, G., Ferris, A. L., Clark, P., Hizi, A., Hughes, S. H., and Arnold, E. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 6320-6324
9. Pullen, K. A., Ishimoto, L. K., and Champoux, J. J. (1992) J. Virol. 66, 367-373
10. Kohlstaedt, L. A., Wang, J., Friedman, J. M., Rice, P. A., and Steitz, T. A. (1992) Science 256, 1783-1790
11. Hsiou, Y., Ding, J., Das, K., Clark, A. D., Jr., Hughes, S. H., and Arnold, E. (1996) Structure (Lond.) 4, 853-860
12. Peters, G., and Glover, C. (1980) J. Virol. 35, 31-40
13. Peters, G. G., and Hu, J. (1980) J. Virol. 36, 692-700
14. Cameron, C. E., Ghosh, M., Le Grice, S. F., and Benkovic, S. J. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 6700-6705
15. Kanaya, S., Kohara, A., Miura, Y., Sekiguchi, A., Iwai, S., Inoue, H., Ohtsuka, E., and Ikehara, M. (1990) J. Biol. Chem. 265, 4615-4621
16. Mizrahi, V., Usdin, M. T., Harington, A., and Dudding, L. R. (1990) Nucleic Acids Res. 18, 5359-5363
17. Katayanagi, K., Miyagawa, M., Matsushima, M., Ishikawa, M., Kanaya, S., Ikehara, M., Matsuzaki, T., and Morikawa, K (1990) Nature 347, 306-309
18. Yang, W., Hendrickson, W. A., Crouch, R. J., and Satow, Y. (1990) Science 249, 1398-1405
19. Smith, J. S., and Roth, M. J. (1993) J. Virol. 67, 4037-4049
20. Smith, J. S., Gritsman, K., and Roth, M. J. (1994) J. Virol. 68, 5721-5729
21. Levin, J. G., Crouch, R. J., Post, K., Hu, S. C., McKelvin, D., Zweig, M., Court, D. L., and Gerwin, B. I. (1988) J. Virol. 62, 4376-4380
22. Wohrl, B. M., Tantillo, C., Arnold, E., and Le Grice, S. F. (1995) Biochemistry 34, 5343-5356
23. Furfine, E. S., and Reardon, J. E. (1991) J. Biol. Chem. 266, 406-412
24. DeStefano, J. J., Mallaber, L. M., Fay, P. J., and Bambara, R. A. (1994) Nucleic Acids Res. 22, 3793-3800
25. DeStefano, J. J., Mallaber, L. M., Fay, P. J., and Bambara, R. A. (1993) Nucleic Acids Res. 21, 4330-4338
26. Palaniappan, C., Fuentes, G. M., Rodriguez-Rodriguez, L., Fay, P. J., and Bambara, R. A. (1996) J. Biol. Chem. 271, 2063-2070
27. Wisniewski, M., Balakrishnan, M., Palaniappan, C., Fay, P. J., and Bambara, R. A. (2000) J. Biol. Chem. 275, 37664-37671
28. Wisniewski, M., Balakrishnan, M., Palaniappan, C., Fay, P. J., and Bambara, R. A. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 11978-11983
29. Fu, T. B., and Taylor, J. (1992) J. Virol. 66, 4271-4278
30. Gabbara, S., Davis, W. R., Hupe, L., Hupe, D., and Peliska, J. A. (1999) Biochemistry 38, 13070-13076
31. Peliska, J. A., and Benkovic, S. J. (1992) Science 258, 1112-1118
32. Peliska, J. A., Balasubramanian, S., Giedroc, D. P., and Benkovic, S. J. (1994) Biochemistry 33, 13817-13823
33. de Rocquigny, H., Ficheux, D., Gabus, C., Fournie-Zaluski, M. C., Darlix, J. L., and Roques, B. P. (1991) Biochem. Biophys. Res. Commun. 180, 1010-1018
34. Guo, J., Wu, T., Anderson, J., Kane, B. F., Johnson, D. G., Gorelick, R. J., Henderson, L. E., and Levin, J. G. (2000) J. Virol. 74, 8980-8988
35. Guo, J., Henderson, L. E., Bess, J., Kane, B., and Levin, J. G. (1997) J. Virol. 71, 5178-5188
36. Guo, J., Wu, T., Bess, J., Henderson, L. E., and Levin, J. G. (1998) J. Virol. 72, 6716-6724
37. Driscoll, M. D., Golinelli, M. P., and Hughes, S. H. (2001)J. Virol. 75, 672-686
38. Gao, H. Q., Sarafianos, S. G., Arnold, E., and Hughes, S. H. (2001) J. Virol. 75, 11874-11880
39. Ben-Artzi, H., Zeelon, E., Amit, B., Wortzel, A., Gorecki, M., and Panet, A. (1993) J. Biol. Chem. 268, 16465-16471
40. Ghosh, M., Howard, K. J., Cameron, C. E., Benkovic, S. J., Hughes, S. H., and Le Grice, S. F. (1995) J. Biol. Chem. 270, 7068-7076
41. Guo, J., Wu, W., Yuan, Z. Y., Post, K., Crouch, R. J., and Levin, J. G. (1995) Biochemistry 34, 5018-5029
42. Archer, R. H., Dykes, C., Gerondelis, P., Lloyd, A., Fay, P., Reichman, R. C., Bambara, R. A., and Demeter, L. M. (2000) J. Virol. 74, 8390-8401