Dimensions of denatured protein chains from hydrodynamic data

Journal of Physical Chemistry B

Volumn 106, Issue 22, 2002, Pages 5769-5775

  Zhou, Huan Xiang ^a  

^a DREXEL UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HYDRODYNAMIC DATA;

CHEMICAL BONDS; CONFORMATIONS; POLYPEPTIDES; THERMODYNAMICS; VISCOSITY;

PROTEINS;

EID: 0037030860     PISSN: 10895647     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp013403+     Document Type: Article

References (43)

1. Hagen, S.J. Hofrichter, J.; Eaton, W.A. J. Phys. Chem. B 1997, 1, 2352.
2. Dill, K.A.; Stigter, D. Adv. Protein Chem. 1995, 46, 59.
3. (a) Zhou, H.-X. J. Phys. Chem. B 2001, 105, 6763.
4. (b) Zhou, H.-X. J. Am. Chem. Soc. 2001, 123, 6730.
5. (c) Zhou, H.-X. Biochemistry 2001, 40, 15 069.
6. (a) Zhou, H.-X,; Dill, K.A. Biochemistry 2001, 40, 11 289.
7. (b) Zhou, H.-X. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 3569.
8. Flory, P.J. Statistical Mechanics of Chain Molecules; Wiley: New York, 1969.
9. Brant, D.A.; Flory, P.J. J. Am. Chin. Soc. 1965, 87, 2791.
10. Miller, W.G.; Brant, D.A.; Flory, P.J. J. Mol. Biol. 1967, 23, 67.
11. Miller, W.G.; Groebel, C.V. Biochemistry 1968, 7, 3925.
12. Engh, R.; Huber, R. Acta Crystallogr. A 1991, 47, 392.
13. Holm, L.; Sander, C. Nucl. Acids Res. 1997, 25, 3389.
14. Fiebig, K.M.; Schwalbe, H.; Buck, M.; Smith, L.J.; Dobson, C.M. J. Phys. Chem. 1996, 100, 2661.
15. Pappu, R.V.; Srinivasan, R.; Rose, G.D. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 12 565.
16. Zhou, H.-X. Biophys. J. 1995, 69, 2286.
17. Zhou, H.-X. Biophys. J. 1995, 69, 2298.
18. Zhou, H.-X. Biophys. Chem. 2001, 93, 171.
19. 14.
20. Pan, H.; Barany, G.; Woodward, C. Protein Sci. 1997, 6, 1985.
21. Wilkins, D.K.; Grimshaw, S.B.; Receveur, V.; Dobson, C.M.; Jones, J.A.; Smith, L.J. Biochemistry 1999, 38, 16 424.
22. Gast, K.; Zirwer, D.; Muller-Frohne, M.; Damaschun, G. Protein Sci. 1998, 7, 2004.
23. Buzzell, J.G.; Tanford, C. J. Phys. Chem. 1956, 60, 1204.
24. Noppert, A.; Gast, K.; Muller-Frohne, M.; Zirwer, D.; Damaschun, G. FEBS Lett. 1996, 380, 179.
25. Luzzati, V.; Witz, J.; Nicolaieff, A. J. Mol. Biol. 1961, 3, 367.
26. Sophianopoulos, A.J.; Rhodes, C.K.; Holcomb, D.N.; van Holde, K.E. J. Biol. Chem. 1962, 237, 1107.
27. Wyman, J.; Ingalls, E.N. J. Biol. Chem. 1943, 147, 297.
28. Tanford, C. Adv. Protein Chem. 1968, 23, 121.
29. Tanford, C.; Kawahara, K.; Lapanje, S. J. Am. Chem. Soc. 1967, 89, 729.
30. Damaschun, G.; Damaschun, H.; Gast, K.; Gernat, C.; Zirwer, D. Biochim. Biophys. Acta 1991, 1078, 289.
31. Damaschun, G.; Damaschun, H.; Gast, K.; Zirwer, D. Biochemistry (Moscow) 1998, 63, 259.
32. Kawahara, K.; Tanford, C. J. Biol. Chem. 1966, 241, 3228.
33. (a) Zimm, B.H. J. Chem. Phys. 1956, 24, 269.
34. (b) Zimm, B.H.; Roe, G.M.; Epstein, L.F. J. Chem. Phys. 1956, 24, 279.
35. (c) Hearst, H.E. J. Chem. Phys. 1962, 37, 2547.
36. (d) Doi, M.; Edwards, S.F. The Theory of Polymer Dynamics; Clarendon Press: Oxford, 1986.
37. This result was obtained by fitting data for unperturbed chains with 11 ≤ N ≤ 151.
38. Flory, P.J. J. Chem. Phys. 1949, 17, 303.
39. Sanchez, I.C. Macromolecules 1979, 12, 980.
40. Chart, H.S.; Dill, K.A. Annu. Rev. Biophys. Biophys. Chem. 1991, 20, 447.
41. Brant, D.A.; Flory, P.J. J. Am. Chin. Soc. 1965, 87, 2788.
42. Lapanje, S.; Tanford, C. J. Am. Chem. Soc. 1967, 89, 5030.
43. 2): 1.29, 0.97, 1.24, 1.19, 0.97, and 0.81. These are in reasonable agreement with the experimental data: 1.16 4- 0.06, 1.08 ± 0.09, 1.03 ± 0.03, 1.17 ± 0.11, 0.87 ± 0.07, and 0.75 ± 0.09.