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Volumn 32, Issue 13, 2002, Pages 1543-1550

Stochastic versus stable transcriptional differences on Plasmodium falciparum DNA microarrays

Author keywords

Clustering; Data analysis; Malaria; Transcription; Validation

Indexed keywords

COMPLEMENTARY DNA; ERYTHROCYTE BAND 4.1 PROTEIN; PROTOZOAL DNA;

EID: 0037021387     PISSN: 00207519     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0020-7519(02)00182-0     Document Type: Conference Paper
Times cited : (9)

References (48)
  • 2
    • 0029052741 scopus 로고
    • Cloning the P. falciparum gene encoding PfEMP1, a malarial variant antigen and adherence receptor on the surface of parasitized human erythrocytes
    • Baruch D.I., Pasloske B.L., Singh H.B., Bi X., Ma X.C., Feldman M., Taraschi T.F., Howard R.J. Cloning the P. falciparum gene encoding PfEMP1, a malarial variant antigen and adherence receptor on the surface of parasitized human erythrocytes. Cell. 82:1995;77-87.
    • (1995) Cell , vol.82 , pp. 77-87
    • Baruch, D.I.1    Pasloske, B.L.2    Singh, H.B.3    Bi, X.4    Ma, X.C.5    Feldman, M.6    Taraschi, T.F.7    Howard, R.J.8
  • 4
    • 0037052931 scopus 로고    scopus 로고
    • Transcripts of developmentally regulated Plasmodium falciparum genes quantified by real-time RT-PCR
    • Blair P.L., Witney A., Haynes J.D., Moch J.K., Carucci D.J., Adams J.H. Transcripts of developmentally regulated Plasmodium falciparum genes quantified by real-time RT-PCR. Nucleic Acids Res. 30:2002;2224-2231.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 2224-2231
    • Blair, P.L.1    Witney, A.2    Haynes, J.D.3    Moch, J.K.4    Carucci, D.J.5    Adams, J.H.6
  • 5
    • 84984932472 scopus 로고    scopus 로고
    • Exploring the new world of the genome with DNA microarrays
    • Brown P.O., Botstein D. Exploring the new world of the genome with DNA microarrays. Nat. Genet. 21:(1 Suppl.):1999;33-37.
    • (1999) Nat. Genet. , vol.21 , Issue.1 SUPPL. , pp. 33-37
    • Brown, P.O.1    Botstein, D.2
  • 6
    • 0032583111 scopus 로고    scopus 로고
    • Stevor and rif are Plasmodium falciparum multicopy gene families which potentially encode variant antigens
    • Cheng Q., Cloonan N., Fischer K., Thompson J., Waine G., Lanzer M., Saul A. stevor and rif are Plasmodium falciparum multicopy gene families which potentially encode variant antigens. Mol. Biochem. Parasitol. 97:1998;161-176.
    • (1998) Mol. Biochem. Parasitol. , vol.97 , pp. 161-176
    • Cheng, Q.1    Cloonan, N.2    Fischer, K.3    Thompson, J.4    Waine, G.5    Lanzer, M.6    Saul, A.7
  • 8
    • 0035400253 scopus 로고    scopus 로고
    • Molecules on the surface of the Plasmodium falciparum infected erythrocyte and their role in malaria pathogenesis and immune evasion
    • Craig A.G., Scherf A. Molecules on the surface of the Plasmodium falciparum infected erythrocyte and their role in malaria pathogenesis and immune evasion. Mol. Biochem. Parasitol. 115:2001;129-143.
    • (2001) Mol. Biochem. Parasitol. , vol.115 , pp. 129-143
    • Craig, A.G.1    Scherf, A.2
  • 9
    • 0035727588 scopus 로고    scopus 로고
    • Plasmodium falciparum: Differential display analysis of gene expression during gametocytogenesis
    • Cui L., Rzomp K.A., Fan Q., Martin S.K., Williams J. Plasmodium falciparum: differential display analysis of gene expression during gametocytogenesis. Exp. Parasitol. 99:2001;244-254.
    • (2001) Exp. Parasitol. , vol.99 , pp. 244-254
    • Cui, L.1    Rzomp, K.A.2    Fan, Q.3    Martin, S.K.4    Williams, J.5
  • 10
    • 0030770649 scopus 로고    scopus 로고
    • Developmentally regulated expression of pfs16, a marker for sexual differentiation of the human malaria parasite Plasmodium falciparum
    • Dechering K.J., Thompson J., Dodemont H.J., Eling W., Konings R.N. Developmentally regulated expression of pfs16, a marker for sexual differentiation of the human malaria parasite Plasmodium falciparum. Mol. Biochem. Parasitol. 89:1997;235-244.
    • (1997) Mol. Biochem. Parasitol. , vol.89 , pp. 235-244
    • Dechering, K.J.1    Thompson, J.2    Dodemont, H.J.3    Eling, W.4    Konings, R.N.5
  • 11
    • 0035974802 scopus 로고    scopus 로고
    • Malaria cooperative silencing elements in var genes
    • Deitsch K.W., Calderwood M.S., Wellems T.E. Malaria cooperative silencing elements in var genes. Nature. 412:2001;875-876.
    • (2001) Nature , vol.412 , pp. 875-876
    • Deitsch, K.W.1    Calderwood, M.S.2    Wellems, T.E.3
  • 12
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi J.L., Iyer V.R., Brown P.O. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science. 278:1997;680-686.
    • (1997) Science , vol.278 , pp. 680-686
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 13
    • 0034255989 scopus 로고    scopus 로고
    • Identification of differentially regulated genes of Plasmodium by suppression subtractive hybridization
    • Dessens J.T., Margos G., Rodriguez M.C., Sinden R.E. Identification of differentially regulated genes of Plasmodium by suppression subtractive hybridization. Parasitol. Today. 16:2000;354-356.
    • (2000) Parasitol. Today , vol.16 , pp. 354-356
    • Dessens, J.T.1    Margos, G.2    Rodriguez, M.C.3    Sinden, R.E.4
  • 14
    • 0034732669 scopus 로고    scopus 로고
    • Expression of Plasmodium falciparum trimeric G proteins and their involvement in switching to sexual development
    • Dyer M., Day K. Expression of Plasmodium falciparum trimeric G proteins and their involvement in switching to sexual development. Mol. Biochem. Parasitol. 108:2000;67-78.
    • (2000) Mol. Biochem. Parasitol. , vol.108 , pp. 67-78
    • Dyer, M.1    Day, K.2
  • 16
    • 0029034851 scopus 로고
    • Plasmodium falciparum: Alterations in organelle transcript abundance during the erythrocytic cycle
    • Feagin J.E., Drew M.E. Plasmodium falciparum: alterations in organelle transcript abundance during the erythrocytic cycle. Exp. Parasitol. 80:1995;430-440.
    • (1995) Exp. Parasitol. , vol.80 , pp. 430-440
    • Feagin, J.E.1    Drew, M.E.2
  • 19
    • 0037134034 scopus 로고    scopus 로고
    • Parasitology. When the host is smarter than the parasite
    • Goldberg D.E. Parasitology. When the host is smarter than the parasite. Science. 296:2002;482-483.
    • (2002) Science , vol.296 , pp. 482-483
    • Goldberg, D.E.1
  • 22
  • 24
    • 0000884487 scopus 로고    scopus 로고
    • Experimental design for gene expression microarrays
    • Kerr M.K., Churchill G.A. Experimental design for gene expression microarrays. Biostatistics. 2:2001;183-201.
    • (2001) Biostatistics , vol.2 , pp. 183-201
    • Kerr, M.K.1    Churchill, G.A.2
  • 25
    • 0025743647 scopus 로고
    • Induction and localization of Plasmodium falciparum stress proteins related to the heat shock protein 70 family
    • Kumar N., Koski G., Harada M., Aikawa M., Zheng H. Induction and localization of Plasmodium falciparum stress proteins related to the heat shock protein 70 family. Mol. Biochem. Parasitol. 48:1991;47-58.
    • (1991) Mol. Biochem. Parasitol. , vol.48 , pp. 47-58
    • Kumar, N.1    Koski, G.2    Harada, M.3    Aikawa, M.4    Zheng, H.5
  • 26
    • 0033529973 scopus 로고    scopus 로고
    • Rifins: A second family of clonally variant proteins expressed on the surface of red cells infected with Plasmodium falciparum
    • Kyes S.A., Rowe J.A., Kriek N., Newbold C.I. Rifins: a second family of clonally variant proteins expressed on the surface of red cells infected with Plasmodium falciparum. Proc. Natl. Acad. Sci. USA. 96:1999;9333-9338.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 9333-9338
    • Kyes, S.A.1    Rowe, J.A.2    Kriek, N.3    Newbold, C.I.4
  • 28
    • 0029943490 scopus 로고    scopus 로고
    • Stage-specific expression of a Plasmodium falciparum protein related to the eukaryotic mitogen-activated protein kinases
    • Lin D.T., Goldman N.D., Syin C. Stage-specific expression of a Plasmodium falciparum protein related to the eukaryotic mitogen-activated protein kinases. Mol. Biochem. Parasitol. 78:1996;67-77.
    • (1996) Mol. Biochem. Parasitol. , vol.78 , pp. 67-77
    • Lin, D.T.1    Goldman, N.D.2    Syin, C.3
  • 29
    • 0032721375 scopus 로고    scopus 로고
    • Differential transcription of histone genes in asexual and sexual stages of Plasmodium falciparum
    • Lobo C.A., Kumar N. Differential transcription of histone genes in asexual and sexual stages of Plasmodium falciparum. Int. J. Parasitol. 29:1999;1447-1449.
    • (1999) Int. J. Parasitol. , vol.29 , pp. 1447-1449
    • Lobo, C.A.1    Kumar, N.2
  • 30
    • 0036160199 scopus 로고    scopus 로고
    • Vacuolar type H+ pumping pyrophosphatases of parasitic protozoa
    • McIntosh M.T., Vaidya A.B. Vacuolar type H+ pumping pyrophosphatases of parasitic protozoa. Int. J. Parasitol. 32:2002;1-14.
    • (2002) Int. J. Parasitol. , vol.32 , pp. 1-14
    • McIntosh, M.T.1    Vaidya, A.B.2
  • 33
    • 0034993512 scopus 로고    scopus 로고
    • Multiple var gene transcripts are expressed in Plasmodium falciparum infected erythrocytes selected for adhesion
    • Noviyanti R., Brown G.V., Wickham M.E., Duffy M.F., Cowman A.F., Reeder J.C. Multiple var gene transcripts are expressed in Plasmodium falciparum infected erythrocytes selected for adhesion. Mol. Biochem. Parasitol. 114:2002;227-237.
    • (2002) Mol. Biochem. Parasitol. , vol.114 , pp. 227-237
    • Noviyanti, R.1    Brown, G.V.2    Wickham, M.E.3    Duffy, M.F.4    Cowman, A.F.5    Reeder, J.C.6
  • 34
    • 0024273546 scopus 로고
    • Plasmodium falciparum: Induction of resistance to mefloquine in cloned strains by continuous drug exposure in vitro
    • Oduola A.M., Milhous W.K., Weatherly N.F., Bowdre J.H., Desjardins R.E. Plasmodium falciparum: induction of resistance to mefloquine in cloned strains by continuous drug exposure in vitro. Exp. Parasitol. 67:1988;354-360.
    • (1988) Exp. Parasitol. , vol.67 , pp. 354-360
    • Oduola, A.M.1    Milhous, W.K.2    Weatherly, N.F.3    Bowdre, J.H.4    Desjardins, R.E.5
  • 35
    • 0035171634 scopus 로고    scopus 로고
    • Serial analysis of gene expression in Plasmodium falciparum reveals the global expression profile of erythrocytic stages and the presence of anti-sense transcripts in the malarial parasite
    • Patankar S., Munasinghe A., Shoaibi A., Cummings L.M., Wirth D.F. Serial analysis of gene expression in Plasmodium falciparum reveals the global expression profile of erythrocytic stages and the presence of anti-sense transcripts in the malarial parasite. Mol. Biol. Cell. 12:2001;3114-3125.
    • (2001) Mol. Biol. Cell , vol.12 , pp. 3114-3125
    • Patankar, S.1    Munasinghe, A.2    Shoaibi, A.3    Cummings, L.M.4    Wirth, D.F.5
  • 36
    • 0022448791 scopus 로고
    • A chromosomal rearrangement in a P. falciparum histidine-rich protein gene is associated with the knobless phenotype
    • Pologe L.G., Ravetch J.V. A chromosomal rearrangement in a P. falciparum histidine-rich protein gene is associated with the knobless phenotype. Nature. 322:1986;474-477.
    • (1986) Nature , vol.322 , pp. 474-477
    • Pologe, L.G.1    Ravetch, J.V.2
  • 38
    • 0026510588 scopus 로고
    • Molecular targets of 5-fluoroorotate in the human malaria parasite, Plasmodium falciparum
    • Rathod P.K., Leffers N.P., Young R.D. Molecular targets of 5-fluoroorotate in the human malaria parasite, Plasmodium falciparum. Antimicrob. Agents Chemother. 36:1992;704-711.
    • (1992) Antimicrob. Agents Chemother. , vol.36 , pp. 704-711
    • Rathod, P.K.1    Leffers, N.P.2    Young, R.D.3
  • 39
    • 0030829371 scopus 로고    scopus 로고
    • Variations in frequencies of drug resistance in Plasmodium falciparum
    • Rathod P.K., McErlean T., Lee P.C. Variations in frequencies of drug resistance in Plasmodium falciparum. Proc. Natl. Acad. Sci. USA. 94:1997;9389-9393.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 9389-9393
    • Rathod, P.K.1    McErlean, T.2    Lee, P.C.3
  • 42
    • 0032530397 scopus 로고    scopus 로고
    • Antigenic variation in malaria: In situ switching, relaxed and mutually exclusive transcription of var genes during intra-erythrocytic development in Plasmodium falciparum
    • Scherf A., Hernandez-Rivas R., Buffet P., Bottius E., Benatar C., Pouvelle B., Gysin J., Lanzer M. Antigenic variation in malaria: in situ switching, relaxed and mutually exclusive transcription of var genes during intra-erythrocytic development in Plasmodium falciparum. EMBO J. 17:1998;5418-5426.
    • (1998) EMBO J. , vol.17 , pp. 5418-5426
    • Scherf, A.1    Hernandez-Rivas, R.2    Buffet, P.3    Bottius, E.4    Benatar, C.5    Pouvelle, B.6    Gysin, J.7    Lanzer, M.8
  • 43
    • 0028982168 scopus 로고
    • Switches in expression of Plasmodium falciparum var genes correlate with changes in antigenic and cytoadherent phenotypes of infected erythrocytes
    • Smith J.D., Chitnis C.E., Craig A.G., Roberts D.J., Hudson-Taylor D.E., Peterson D.S., Pinches R., Newbold C.I., Miller L.H. Switches in expression of Plasmodium falciparum var genes correlate with changes in antigenic and cytoadherent phenotypes of infected erythrocytes. Cell. 82:1995;101-110.
    • (1995) Cell , vol.82 , pp. 101-110
    • Smith, J.D.1    Chitnis, C.E.2    Craig, A.G.3    Roberts, D.J.4    Hudson-Taylor, D.E.5    Peterson, D.S.6    Pinches, R.7    Newbold, C.I.8    Miller, L.H.9
  • 44
    • 0029070914 scopus 로고
    • The large diverse gene family var encodes proteins involved in cytoadherence and antigenic variation of Plasmodium falciparum-infected erythrocytes
    • Su X.-Z., Heatwole V., Wertheimer S., Guinet F., Herrfeldt J.A., Peterson D.S., Ravetch J.A., Wellems T.E. The large diverse gene family var encodes proteins involved in cytoadherence and antigenic variation of Plasmodium falciparum-infected erythrocytes. Cell. 82:1995;89-100.
    • (1995) Cell , vol.82 , pp. 89-100
    • Su, X.-Z.1    Heatwole, V.2    Wertheimer, S.3    Guinet, F.4    Herrfeldt, J.A.5    Peterson, D.S.6    Ravetch, J.A.7    Wellems, T.E.8
  • 45
    • 0017311840 scopus 로고
    • Human malaria parasites in continuous culture
    • Trager W., Jensen J.B. Human malaria parasites in continuous culture. Science. 193:1976;673-675.
    • (1976) Science , vol.193 , pp. 673-675
    • Trager, W.1    Jensen, J.B.2
  • 47
    • 0024435053 scopus 로고
    • Developmental regulation of stage-specific ribosome populations in Plasmodium
    • Waters A.P., Syin C., McCutchan T.F. Developmental regulation of stage-specific ribosome populations in Plasmodium. Nature. 342:1989;438-440.
    • (1989) Nature , vol.342 , pp. 438-440
    • Waters, A.P.1    Syin, C.2    McCutchan, T.F.3
  • 48
    • 0025358702 scopus 로고
    • Stage-specific ribosomal RNA expression switches during sporozoite invasion of hepatocytes
    • Zhu J.D., Waters A.P., Appiah A., McCutchan T.F., Lal A.A., Hollingdale M.R. Stage-specific ribosomal RNA expression switches during sporozoite invasion of hepatocytes. J. Biol. Chem. 265:1990;12740-12744.
    • (1990) J. Biol. Chem. , vol.265 , pp. 12740-12744
    • Zhu, J.D.1    Waters, A.P.2    Appiah, A.3    McCutchan, T.F.4    Lal, A.A.5    Hollingdale, M.R.6


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