Biochemical amplification waves in a one-dimensional microflow system

Journal of Physical Chemistry B

Volumn 106, Issue 17, 2002, Pages 4525-4532

  Kirner, T ^a   Steen, D ^b,c   McCaskill, J S ^a   Ackermann, J ^a  

^a FRAUNHOFER GESELLSCHAFT   (Germany)

^b FRITZ LIPMANN INSTITUTE   (Germany)

^c Biolitec AG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL AMPLIFICATION WAVES;

AMPLIFICATION; ENZYMES; NUCLEIC ACIDS; REACTION KINETICS; SPECTROSCOPIC ANALYSIS;

BIOCHEMISTRY;

EID: 0037007793     PISSN: 10895647     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp013633o     Document Type: Article

References (54)

1. Eigen, M.; McCaskill, J.S.; Schuster, P. Adv. Chem. Phys. 1989, 75, 149.
2. Eigen, M. Die Naturwissenschaften 1971, 58, 465.
3. Kauffman, S.A. J. Cybernetics 1971, 13, 71.
4. Rössler, O.E.Z. Naturforsch. 1971, 26b, 741.
5. Eigen, M.; Schuster, P. Die Naturwissenschaften 1977, 64, 541.
6. Eigen, M.; Schuster, P. Die Naturwissenschaften 1978, 65, 7.
7. Eigen, M.; Schuster, P. Die Naturwissenschaften 1978, 65, 341.
8. Eigen, M.; Schuster, P. The Hypercycle; Springer: Berlin, 1979.
9. Smith, J. Maynard Nature 1979, 280, 445.
10. Bresch, C.; Niesert, U.; Harnasch, D. J. Theor. Biol. 1980, 85, 399.
11. Dyson, F.J. J. Mol. Evol. 1982, 118, 344.
12. Boerlijst, M.C.; Hogeweg, P. Physica D 1991, 48, 17.
13. McCaskill, J.S. In Ursprünge der Molekularen Kooperation: Theorie und Experiment; Antrittsvorlesungen 1994 an der Friedrich-Schiller-Universität Jena; Schuster, P., Ed.; Institut für Molekulare Biotechnologie e. V.: Jena, Germany, 1995; p 27.
14. Böddeker, B. Physikalische Modelle für Koevolution und Simulation auf einem hardwareprogrammierbaren Prozessor, Diploma Thesis, Universität Göttingen, Germany, 1995.
15. McCaskill, J.S.; Maeke, T.; Gemm, U.; Schulte, L.; Tangen, U. Lect. Note. Comput. Sci. 1259; Springer-Verlag: New York, 1997; p 260.
16. Cronhjort, M.B.; Blomberg, C. Physica D 1997, 101, 289.
17. Bauer, G.J.; McCaskill, J.S.; Otten, H. Proc. Natl. Acad. Sci. U.S.A. 1989, 86, 7937.
18. McCaskill, J.S.; Bauer, G.J. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 4191.
19. Tam, W.Y.; Horsthemke, W.J.; Noszticzius, Z.; Swinney, H.L. J. Chem. Phys. 1988, 88, 3395.
20. Ehrfeld, W.; Hessel, V.; Löwe, H. Microreactors, New Technology for Modern Chemistry; Wiley-VCH: Weinheim, Germany, 2000.
21. Harrison, D.J., van den Berg, A., Eds.; Micro Total Analysis Systems '98, Proceedings of the μTAS '98 Workshop; Kluwer Academic Publishers: Dordrecht, The Netherlands, 2000.
22. Wright, S. Proc. VI Int. Congr. Genet. 1932, 1, 356.
23. Wright, S. Ecology 1945, 26, 415.
24. Kimura, M. Proc. Natl. Acad. Sci. U.S.A. 1983, 80, 6317.
25. Aoki, K. J. Math. Biol. 1998, 25, 453.
26. Szathmáry, E. Trends Ecol. Evol. 1989, 4, 200.
27. Ehricht, R.; Ellinger, T.; McCaskill, J.S. Eur. J. Biochem. 1997, 243, 358.
28. Kwoh, D.Y.; Davis, G.R.; Whitefield, K.M.; Chappelle, H.L.; DiMichele, L.J.; Gingeras, T.R. Proc. Natl. Acad. Sci. 1989, 86, 1173.
29. Guatelli, J.C.; Whitefield, K.M.; Kwoh, D.Y.; Barringer, K.J.; Richman, D.D.; Gingeras, T.R. Proc. Natl. Acad. Sci. 1990, 87, 1874.
30. Fahy, E.; Kwoh, D.Y.; Gingeras, T.R. PCR Methods Applications 1991, 1, 25.
31. Compton, J. Nature 1991, 350, 91.
32. Romano, J.W.; Shurtliff, R.N.; Sarngadharan, M.G.; Pal, R. J. Virol. Methods 1995, 54, 109.
33. Kirner, T.; Ackermann, J.; Ehricht, R.; McCaskill, J.S. Biophys. Chem. 1999, 79, 163.
34. Ellinger, T.; Ehricht, R.; McCaskill, J.S. Chem. Biol. 1998, 5, 729.
35. Breaker, R.R.; Joyce, G.F. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 6093.
36. Breaker, R.R.; Banjeri, A.; Joyce, G.F. Biochemistry 1994, 33, 11980.
37. Ehricht, R.; Design, Verwirklichung und funktional-evolutive Charakterisierang gekoppelter Amplifikation in vitro, Ph.D. Thesis, Friedrich-Schiller-Universität, Jena, Germany, 1998.
38. Haugland, R.P. Handbook of fluorescent probes and research chemicals, 5th ed.; Molecular Probes, Inc.: Eugene, OR, 1992; p 223.
39. Le Grice, S.F.L.; Cameron, G.E.; Binkovic, S.J. Methods Enzymol. 1995, 262, 130.
40. Ellinger, T.; Ehricht, R. BioTechniques 1997, 24, 718.
41. Schmidt, K.; McCaskill, J.S. In Open Flow Microreactors, Annual Report; Gumpert, J., Ed.; Institute of Molecular Biotechnology: Jena, Germany, 1996; p 92 (http://www.imb-jena.de/ANN REP.html).
42. McCaskill, J.S. Biophys. Chem. 1997, 66, 145.
43. Schmidt, K.; Foerster, P.; Bochmann, A.; McCaskill, J.S. A microflow reactor for two-dimensional investigations of in vitro amplification systems. In Microreaction Technology, Proceedings of the First International Conference on Microreaction Technology; Ehrenfeld, W., Ed.; Springer: Berlin, 1998; p 234.
44. Bräutigam, R.; Steen, D.; Ehricht, R.; McCaskill, J.S. Isothermal Biochemical Amplification in Miniaturized Reactors with integrated Micro Valves. Microreaction Technology, Proceedings of the third International Conference on Microreaction Technology, Frankfurt a. M.; Springer: Berlin, 1999, in press.
45. Hlady, V.; Buijs, J. Curr. Opin. Biotech. 1996, 7, 72.
46. Schoffner, M.A.; Cheng, J.; Hvichia, G.E.; Kricka, L.J.; Wilding, P. Nucl. Acids Res. 1996, 24, 375.
47. Taylor, T.B.; Winn-Denn, E.S.; Picozza, E.; Woudenberg, T.M.; Albin, M. Nucl. Acids Res. 1997, 25, 3164.
48. Dapprich, J. Fluoreszenzdetektion molekularer Evolution; Georg-August-Universität: Göttingen, Germany, 1994.
49. Kirner, T.; Ackermann, J.; Steen, D.; Ehricht, R.; Ellinger, T.; Foerster, P.; McCaskill, J.S. Chem. Eng. Sci. 2000, 55, 245.
50. Kirner, T. Musterbildung in biochemischen in vitro Amplifikations-systemen, Ph.D. Thesis, Friedrich-Schiller-Universität, Jena, Germany, 2000.
51. Fisher, R.A. Ann. Eugenics 1937, 7, 355.
52. Sott, S.K.; Showalter, K. J. Phys. Chem. 1992, 96, 8702.
53. Voronkov, V.G.; Semonov, N.N. Zh. Fiz. Khim. 1939, 13, 1695.
54. Pearson, J.E. Science 1993, 261, 189.