Single-strand conformation polymorphism (SSCP) assays for major histocompatibility complex B genotyping in chickens

Poultry Science

Volumn 81, Issue 12, 2002, Pages 1832-1841

  Goto, R M ^a   Afanassieff, M ^a,b,f   Ha, J ^a   Iglesias, G M ^c   Ewald, S J ^d   Briles, W E ^e   Miller, M M ^a  

^a CITY OF HOPE NATIONAL MEDICAL CENTER   (United States)

^b CEMAGREF   (France)

^c UNIVERSIDAD DE BUENOS AIRES   (Argentina)

^d AUBURN UNIVERSITY   (United States)

^e NORTHERN ILLINOIS UNIVERSITY   (United States)

^f UNIVERSITÉ DE LYON   (France)

Author keywords

B haplotyping; B G restriction fragment pattern; Major histocompatability complex class I (B F) and class II (B L) loci; Major histocompatibility complex; Single strand conformation polymorphism pattern

Indexed keywords

GALLUS GALLUS;

ENDODEOXYRIBONUCLEASE PVUII; TYPE II SITE SPECIFIC DEOXYRIBONUCLEASE;

ANIMAL; ARTICLE; CHICKEN; COMPARATIVE STUDY; GENETICS; GENOTYPE; HAPLOTYPE; MAJOR HISTOCOMPATIBILITY COMPLEX; METABOLISM; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SINGLE STRAND CONFORMATION POLYMORPHISM;

ANIMALS; CHICKENS; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; GENOTYPE; HAPLOTYPES; MAJOR HISTOCOMPATIBILITY COMPLEX; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE-STRANDED CONFORMATIONAL; SEQUENCE ALIGNMENT;

EID: 0036984503     PISSN: 00325791     EISSN: None     Source Type: Journal    
DOI: 10.1093/ps/81.12.1832     Document Type: Article

References (43)

1. Aeed, P. A., W. E. Briles, R. M. Zsigray, and W. M. Collins. 1993. Influence of different B-complex recombinants on the outcome of Rous sarcomas in chickens. Anim. Genet. 24:177-181.
2. Afanassieff, M., R. M. Goto, J. Ha, M. Sherman, L. Zhong, C. Auffray, F. Coudert, R. Zoorob, and M. M. Miller. 2001. At least one class I gene in restriction fragment pattern-Y (Rfp-Y), the second MHC gene cluster in the chicken, is transcribed, polymorphic and shows divergent specialization in antigen binding region. J. Immunol. 166:3324-3333.
3. 15 associated with progressive Marek's disease, Rous sarcoma, and avian leukosis virus-induced tumors in inbred 1514 chickens. Poult. Sci. 62:573-578.
4. Bacon, L. D., and R. L. Witter. 1992. Influence of turkey herpesvirus vaccination on the B-haplotype effect on Marek's disease resistance in 15.B-congenic chickens. Avian Dis. 36:378-385.
5. Bacon, L. D., and R. L. Witter. 1993. Influence of B-haplotype on the relative efficacy of Marek's disease vaccines of different serotypes. Avian Dis. 37:53-59.
6. Bacon, L. D., and R. L. Witter. 1994. B haplotype influence on the relative efficacy of Marek's disease vaccines in commercial chickens. Poult. Sci. 73:481-487.
7. Bacon, L. D., and R. L. Witter. 1995. Efficacy of Marek's disease vaccines in Mhc hetrozygous chickens: Mhc congenic x inbred line F1 matings. J. Hered. 86:269-273.
8. Bacon, L. D., R. L. Witter, L. B. Crittenden, A. Fadly, and J. Motta. 1981. B-haplotype influence on Marek's disease, Rous sarcoma, and lymphoid leukosis virus-induced tumors in chickens. Poult. Sci. 60:1132-1139.
9. Briles, R. E. 1962. Additional blood group systems of chickens. Ann. N.Y. Acad. Sci. 97:173-183.
10. Briles, W. E., R. E. Briles, and R. E. Taffs. 1982a. An apparent recombinant within the B-G region of the B complex. Poult. Sci. 61:1425-1426. (Abstr.)
11. Briles, W. E., R. W. Briles, R. E. Taffs, and H. A. Stone. 1983. Resistance to a malignant lymphoma in chickens is mapped to subregion of major histocompatibility (B) complex. Science 219:977-979.
12. Briles, W. E., N. Bumstead, D. L. Ewert, D. G. Gilmour, J. Goggusev, K. Hala, C. Koch, B. M. Longenecker, A. W. Nordskog, J. R. Pink, L. W. Schierman, M. Simonsen, A. Toivanen, P. Toivanen, O. Vainio, and G. Wick. 1982b. Nomenclature for chicken major histocompatibility (B) complex. Immunogenetics 15:441-447.
13. Briles, W. E., R. M. Goto, C. Auffray, and M. M. Miller. 1993. A polymorphic system related to but genetically independent of the chicken major histocompatibility complex. Immunogenetics 37:408-414.
14. Briles, W. E., H. A. Stone, and R. K. Cole. 1977. Marek's disease: Effects of B histocompatibility alloalleles in resistant and susceptible chicken lines. Science 195:193-195.
15. Fulton, J. E., H. D. Hunt, and L. D. Bacon. 2001. Chicken major histocompatibility complex class I definition using antisera induced by cloned class I sequences. Poult. Sci. 80:1554-1561.
16. Golemboski, K., R. L. Taylor, R. E. Briles, R. W. Briles, and R. R. Diertert. 1995. Chickens with serologically-similar B complex recombinant haplotypes differ in macrophage response. Avian Pathol. 24:347-352.
17. 23. Anim. Genet. 25(Suppl. 2):21.
18. Hala, K., A. M. Chausse, Y. Bourlet, O. Lassila, V. Hasler, and C. Auffray. 1988. Attempt to detect recombination between B-F and B-L genes within the chicken B complex by serological typing, in vitro MLR, and RFLP analyses. Immunogenetics 28:433-438.
19. Hunt, H. D., G. T. Pharr, and L. D. Bacon. 1994. Molecular analysis reveals MHC class I intra-locus recombination in the chicken. Immunogenetics 40:370-375.
20. Kaufman, J. 2000. The simple chicken major histocompatibiity complex: Life and death in the face of pathogens and vaccines. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 355:1077-1084.
21. Lamont, S. J., B. M. Gerndt, C. M. Warner, and L. D. Bacon. 1990. Analysis of restriction fragment length polymorphisms of the major histocompatibility complex of 15I5-B-congenic chicken lines. Poult., Sci. 69:1195-1203.
22. Landesman, E., Z. Uni, and E. D. Heller. 1993. Designation by restriction fragment length polymorphism of major histocompatibility complex class IV haplotypes in meat-type chickens. Anim. Genet. 24:349-354.
23. Li, L., L. W. Johnson, and S. J. Ewald. 1997. Molecular characterization of major histocompatibility complex (B) haplotypes in broiler chickens. Anim. Genet. 28:258-267.
24. Li, L., L. W. Johnson, E. J. Livant, and S. J. Ewald. 1999. The MHC of a broiler chicken line: Serology, B-G genotypes, and B-F/B-LB sequences. Immunogenetics 49:215-224.
25. Livant, E. J., D. Zheng, L. W. Johnson, W. Shi, and S. J. Ewald. 2001. Three new MHC haplotypes in broiler breeder chickens. Anim. Genet. 32:123-131.
26. Longenecker, B. M., F. Pazderka, J. S. Gavora, J. L. Spencer, E. A. Stephens, R. L. Witter, and R. F. Ruth. 1977. Role of the major histocompatibility complex in resistance to Marek's disease: Restriction of the growth of JMV-MD tumor cells in genetically resistant birds. Adv. Exp. Med. Biol. 88:287-298.
27. Miller, M. M., H. Abplanalp, and R. Goto. 1988a. Genotyping chickens for the B-G subregion of the major histocompatibility complex using restriction fragment length polymorphisms. Immunogenetics 28:374-379.
28. Miller, M. M., L. D. Bacon, and K. Hala. 2001. Chicken Major Histocompatibility Complex (MHC) Workshop. Pages 364-373 in Current Progress on Avian Immunology Research. American Association of Avian Pathologists, Kennett Square, PA.
29. Miller, M. M., and R. M. Goto. 1993. PCR-SSCP: a method for studying the polymorphism of the B-G antigens of the chicken major histocompatibility complex. Pages 153-158 in Avian Immunology in Progress. INRA Editions, Tours, France.
30. Miller, M. M., R. M. Goto, A. Bernot, R. Zoorob, C. Auffray, N. Bumstead, and W. E. Briles. 1994. Two Mhc class I and two Mhc class II genes map to the chicken Rfp-Y system outside the B complex. Proc. Natl. Acad. Sci. USA 91:4397-4401.
31. Miller, M. M., R. M. Goto, and W. E. Briles. 1988b. Biochemical confirmation of recombination within the B-G subregion of the chicken major histocompatibility complex. Immunogenetics 27:127-132.
32. Miller, M. M., R. Goto, S. Young, J. Chirivella, D. Hawke, and C. G. Miyada. 1991. Immunoglobulin variable-region-like domains of diverse sequence within the major histocompatibility complex of the chicken. Proc. Natl. Acad. Sci. USA 88:4377-4381.
33. Miller, M. M., R. M. Goto, R. L. Taylor, Jr., R. Zoorob, C. Auffray, R. W. Briles, W. E. Briles, and S. E. Bloom. 1996. Assignment of Rfp-Y to the chicken major histocompatibility complex/ NOR microchromosome and evidence for high-frequency recombination associated with the nucleolar organizer region. Proc. Natl. Acad. Sci. USA 93:3958-3962.
34. Oto, M., S. Miyake, and Y. Yuasa 1993. Optimization of nonradioisotopic single strand conformation polymorphism analysis with a conventional minislab gel electrophoresis apparatus. Anal. Biochem. 213:19-22.
35. Schat, K. A., R. L. Taylor, Jr., and W. E. Briles. 1994. Resistance to Marek's disease in chickens with recombinant haplotypes to the major histocompatibility (B) complex. Poult. Sci. 73:502-508.
36. Skjodt, K., C. Koch, M. Crone, and M. Simonsen. 1985. Analysis of chickens for recombination within the MHC (B-complex). Tissue Antigens 25:278-282.
37. Uni, Z., M. Gutman, G. Leitner, E. Landesman, D. Heller, and A. Cahaner. 1993. Major histocompatibility complex class IV restriction fragment length polymorphism markers in replicated meat-type chicken lines divergently selected for high or low early immune response. Poult. Sci. 72:1823-1831.
38. Uni, Z., J. Hillel, R. Waiman, A. Cahaner, and D. E. Heller. 1992. Restriction fragment length polymorphism analysis of major histocompatibility complex class IV (B-G) genotypes in meat-type chickens. Anim. Genet. 23:379-384.
39. White, E. C., W. E. Briles, R. W. Briles, and R. L. Taylor, Jr. 1994. Response of six major histocompatibility (B) complex recombinant haplotypes to Rous sarcomas. Poult. Sci. 73:836-842.
40. Wu, D. Y., L. Ugozzoli, B. K. Pal, J. Qian, and R. B. Wallace. 1991. The effect of temperature and oligonucleotide primer length on the specificity and efficiency of amplification by the polymerase chain reaction. DNA Cell Biol. 10:233-238.
41. Yonash, N., E. D. Heller, J. Hillel, and A. Cahaner. 2000. Detection of RFLP markers associated with antibody response in meat-type chickens: Haplotype/genotype, single-band, and multiband analyses of RFLP in the major histocompatibility complex. J. Hered. 91:24-30.
42. Zheng, D., G. O'Keefe, L. Li, L. W. Johnson, and S. J. Ewald. 1999. A PCR method for typing B-L beta II family (class II MHC) alleles in broiler chickens. Anim. Genet. 30:109-119.
43. Zoorob, R., A. Bernot, D. M. Renoir, F. Choukri, and C. Auffray. 1993. Chicken major histocompatibility complex class II B genes: Analysis of interallelic and interlocus sequence variance. Eur. J. Immunol. 23:1139-1145.