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Volumn 68, Issue 12, 2002, Pages 6421-6424

Competitive PCR for quantitation of a Cytophaga-Flexibacter-Bacteroides phylum bacterium associated with the Tuber borchii Vittad. mycelium

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; CELL CULTURE; FUNGI; RNA;

EID: 0036944625     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.68.12.6421-6424.2002     Document Type: Article
Times cited : (12)

References (22)
  • 1
    • 0033754096 scopus 로고    scopus 로고
    • Phylogenetic characterization and in situ detection of a Cytophaga-Flexibacter-Bacteroides phylogroup bacterium in Tuber borchii Vittad. ectomycorrhizal mycelium
    • Barbieri, E., L. Potenza, I. Rossi, D. Sisti, G. Giomaro, S. Rossetti, C. Beimfohr, and V. Stocchi. 2000. Phylogenetic characterization and in situ detection of a Cytophaga-Flexibacter-Bacteroides phylogroup bacterium in Tuber borchii Vittad. ectomycorrhizal mycelium. Appl. Environ. Microbiol. 66:5035-5042.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 5035-5042
    • Barbieri, E.1    Potenza, L.2    Rossi, I.3    Sisti, D.4    Giomaro, G.5    Rossetti, S.6    Beimfohr, C.7    Stocchi, V.8
  • 2
    • 1842362290 scopus 로고
    • Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli
    • Brosius, J., M. L. Palmer, P. J. Kennedy, and H. F. Noller. 1978. Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc. Natl. Acad. Sci. USA 75:4801-4805.
    • (1978) Proc. Natl. Acad. Sci. USA , vol.75 , pp. 4801-4805
    • Brosius, J.1    Palmer, M.L.2    Kennedy, P.J.3    Noller, H.F.4
  • 3
    • 0032432372 scopus 로고    scopus 로고
    • Redefining relativity: Quantitative PCR at low template concentrations for industrial and environmental microbiology
    • Chandler, D. P. 1998. Redefining relativity: quantitative PCR at low template concentrations for industrial and environmental microbiology. J. Ind. Microbiol. Biotechnol. 21:128-140.
    • (1998) J. Ind. Microbiol. Biotechnol. , vol.21 , pp. 128-140
    • Chandler, D.P.1
  • 4
    • 0031806188 scopus 로고    scopus 로고
    • Chitin and ergosterol combined to measure total and living fungal biomass in ectomycorrhizas
    • Ekblad, A., H. Wallander, and T. Näsholm. 1998. Chitin and ergosterol combined to measure total and living fungal biomass in ectomycorrhizas. New Phytol. 138:143-149.
    • (1998) New Phytol. , vol.138 , pp. 143-149
    • Ekblad, A.1    Wallander, H.2    Näsholm, T.3
  • 5
    • 0029032318 scopus 로고
    • Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA gene from a mixture of bacterial species
    • Farrelly, V., F. A. Rainey, and E. Stackebrandt. 1995. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA gene from a mixture of bacterial species. Appl. Environ, Microbiol. 61:2798-2801.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 2798-2801
    • Farrelly, V.1    Rainey, F.A.2    Stackebrandt, E.3
  • 6
    • 0027085819 scopus 로고
    • A partial phylogenetic analysis of the "flavobacter-bacteroides" phylum: Basis for taxonomic restructuring
    • Gherna, R., and C. R. Woese. 1992. A partial phylogenetic analysis of the "flavobacter-bacteroides" phylum: basis for taxonomic restructuring. Syst. Appl. Microbiol. 15:513-521.
    • (1992) Syst. Appl. Microbiol. , vol.15 , pp. 513-521
    • Gherna, R.1    Woese, C.R.2
  • 7
    • 0032914443 scopus 로고    scopus 로고
    • Quantitative selective PCR of 16S ribosomal DNA correlates well with selective agar plating in describing population dynamics of indigenous Pseudomonas spp. in soil hot spots
    • , Johnsen, K., ØO E. Carsten, S. Jacobsen, L. Thirup, and Torsvik. 1999. Quantitative selective PCR of 16S ribosomal DNA correlates well with selective agar plating in describing population dynamics of indigenous Pseudomonas spp. in soil hot spots. Appl. Environ. Microbiol. 65:1786-1788.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1786-1788
    • Johnsen, K.1    Carsten, ØO.E.2    Jacobsen, S.3    Thirup, L.4    Torsvik5
  • 9
    • 0036729443 scopus 로고    scopus 로고
    • Isolation and characterization of differentially expressed genes in mycelium and fruit body of Tuber borchii
    • Lacourt, I., S. Duplessis, S. Abba, P. Bonfante, and F. Martin. 2002. Isolation and characterization of differentially expressed genes in mycelium and fruit body of Tuber borchii. Appl. Environ. Microbiol. 68:4574-4782.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 4574-4782
    • Lacourt, I.1    Duplessis, S.2    Abba, S.3    Bonfante, P.4    Martin, F.5
  • 10
    • 0030438385 scopus 로고    scopus 로고
    • Estimation of abundance of an uncultured soil bacterium strain by a competitive quantitative PCR method
    • Lee, S.-Y., J. Bollinger, D. Bezdicek, and A. Ogram. 1996. Estimation of abundance of an uncultured soil bacterium strain by a competitive quantitative PCR method. Appl. Environ. Microbiol. 62:3787-3793.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 3787-3793
    • Lee, S.-Y.1    Bollinger, J.2    Bezdicek, D.3    Ogram, A.4
  • 11
    • 0028976428 scopus 로고
    • Survival and activity, of Pseudomonas sp. strain B13(FR1) in a marine microcosm determined by quantitative PCR and an rRNA-targeting probe and its effect on the indigenous bacterioplankton
    • Leser, T. D., M. Boye, and N. B. Hendricksen. 1995. Survival and activity, of Pseudomonas sp. strain B13(FR1) in a marine microcosm determined by quantitative PCR and an rRNA-targeting probe and its effect on the indigenous bacterioplankton. Appl. Environ. Microbiol. 61:1201-1207.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1201-1207
    • Leser, T.D.1    Boye, M.2    Hendricksen, N.B.3
  • 13
    • 0035671459 scopus 로고    scopus 로고
    • Cloning and characterisation of differentially expressed cDNA clones from Tilia platyphyllos-Tuber borchii ectomycorrhizae using a differential screening approach
    • Polidori, E., D. Agostini, S. Zeppa, L. Potenza, F. Palma, D. Sisti, and V. Stocchi. 2002. Cloning and characterisation of differentially expressed cDNA clones from Tilia platyphyllos- Tuber borchii ectomycorrhizae using a differential screening approach. Mol. Gen. Genom. 266:858-864.
    • (2002) Mol. Gen. Genom. , vol.266 , pp. 858-864
    • Polidori, E.1    Agostini, D.2    Zeppa, S.3    Potenza, L.4    Palma, F.5    Sisti, D.6    Stocchi, V.7
  • 14
    • 0033862808 scopus 로고    scopus 로고
    • Basic principles of quantitative PCR
    • Raeymaekers, L. 2000. Basic principles of quantitative PCR. Biotechnol. 15:115-122.
    • (2000) Biotechnol. , vol.15 , pp. 115-122
    • Raeymaekers, L.1
  • 15
    • 0031933452 scopus 로고    scopus 로고
    • Detection of Clostridium proteoclasticum and closely related strains in the rumen by competitive PCR
    • Reilly, K., and G. T. Attwood. 1998. Detection of Clostridium proteoclasticum and closely related strains in the rumen by competitive PCR. Appl. Environ. Microbiol. 64:907-913.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 907-913
    • Reilly, K.1    Attwood, G.T.2
  • 17
    • 0000778479 scopus 로고    scopus 로고
    • In vitro mycorrhizal synthesis of micropropagated Tilia platyphyllos Scop. plantlets with Tuber borchii Vittad. Mycelium in pure culture
    • Sisti, D., A. Zambonelli, G. Giomaro, I. Rossi, P. Ceccaroli, B. Citterio, P. A. Benedetti, and V. Stocchi. 1998. In vitro mycorrhizal synthesis of micropropagated Tilia platyphyllos Scop. plantlets with Tuber borchii Vittad. mycelium in pure culture. Acta Hortic. 457:379-387.
    • (1998) Acta Hortic. , vol.457 , pp. 379-387
    • Sisti, D.1    Zambonelli, A.2    Giomaro, G.3    Rossi, I.4    Ceccaroli, P.5    Citterio, B.6    Benedetti, P.A.7    Stocchi, V.8
  • 18
    • 0031894349 scopus 로고    scopus 로고
    • Classification of heparinolytic bacteria into a new genus. Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. Proposal of the family Sphingobacteriaceae fam. nov.
    • Steyn, P. L., P. Segers, M. Vancanneyt, P. Sandra, K. Kersters, and J. J. Joubert. 1998. Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. Proposal of the family Sphingobacteriaceae fam. nov. Int. J. Syst. Bacteriol. 48:165-177.
    • (1998) Int. J. Syst. Bacteriol. , vol.48 , pp. 165-177
    • Steyn, P.L.1    Segers, P.2    Vancanneyt, M.3    Sandra, P.4    Kersters, K.5    Joubert, J.J.6
  • 19
    • 0022394063 scopus 로고
    • Natural relationship between bacteroides and flavobacteria
    • Weisburg, W. G., Y. Oyaizu, H. Oyaizu, and C. R. Woese. 1985. Natural relationship between bacteroides and flavobacteria. J. Bacteriol. 164:230-236.
    • (1985) J. Bacteriol. , vol.164 , pp. 230-236
    • Weisburg, W.G.1    Oyaizu, Y.2    Oyaizu, H.3    Woese, C.R.4
  • 20
    • 0027195585 scopus 로고
    • Absolute quantification of target DNA: A simple competitive PCR for efficient analysis of multiple samples
    • Zachar, V., R. A. Thomas, and A. S. Goustin. 1993. Absolute quantification of target DNA: a simple competitive PCR for efficient analysis of multiple samples. Nucleic Acids Res. 8:2017-2018.
    • (1993) Nucleic Acids Res. , vol.8 , pp. 2017-2018
    • Zachar, V.1    Thomas, R.A.2    Goustin, A.S.3
  • 21
    • 0035136762 scopus 로고    scopus 로고
    • Evaluation of transcript level and biomass during mycelial development of the truffle, Tuber Borchii
    • Zeppa, S., L. Potenza, L. Vallorani, M. Guescini, P. Ciarmela, and V. Stocchi. 2001. Evaluation of transcript level and biomass during mycelial development of the truffle, Tuber borchii. Biotechnol. Lett. 23:17-20.
    • (2001) Biotechnol. Lett. , vol.23 , pp. 17-20
    • Zeppa, S.1    Potenza, L.2    Vallorani, L.3    Guescini, M.4    Ciarmela, P.5    Stocchi, V.6
  • 22
    • 0029778731 scopus 로고    scopus 로고
    • Technical aspects of competitive quantitative PCR
    • Zimmermann, K., and J. W. Mannhalter. 1996. Technical aspects of competitive quantitative PCR. BioTechniques 21:268-272.
    • (1996) BioTechniques , vol.21 , pp. 268-272
    • Zimmermann, K.1    Mannhalter, J.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.