Genealogical relationships among laboratory strains of Chlamydomonas reinhardtii as inferred from matrix metalloprotease genes

Current Genetics

Volumn 41, Issue 2, 2002, Pages 115-122

  Kubo, Takeaki ^a   Abe, Jun ^a   Saito, Tatsuaki ^b   Matsuda, Yoshihiro ^a  

^a KOBE UNIVERSITY   (Japan)

^b OKAYAMA UNIVERSITY OF SCIENCE   (Japan)

Author keywords

Chlamydomonas reinhardtii; Chlamydomonas smithii; Matrix metalloprotease genes; Molecular phylogeny

Indexed keywords

GAMETOLYSIN; MATRIX METALLOPROTEINASE; UNCLASSIFIED DRUG;

3' UNTRANSLATED REGION; ARTICLE; CHLAMYDOMONAS REINHARDTII; CLINICAL RESEARCH; CONTROLLED STUDY; GENE SEQUENCE; GENETIC POLYMORPHISM; GENETIC VARIABILITY; INTRON; MATING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; WILD TYPE; ZYGOTE;

3' UNTRANSLATED REGIONS; ALGAL PROTEINS; ANIMALS; BASE SEQUENCE; BLOTTING, SOUTHERN; CHLAMYDOMONAS REINHARDTII; GENES, PROTOZOAN; GENOME, PROTOZOAN; GLYCOPROTEINS; INTRONS; MATRIX METALLOPROTEINASES; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; PROTOZOAN PROTEINS; SEQUENCE HOMOLOGY;

ALGAE; CHLAMYDOMONAS; CHLAMYDOMONAS REINHARDTII; CHLAMYDOMONAS SMITHII; EUKARYOTA;

EID: 0036943673     PISSN: 01728083     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00294-002-0284-0     Document Type: Article

References (30)

1. 2 adapted cells of Chlamydomonas reinhardtii. DNA Res 7:305-307
2. Boynton JE, Harris EH, Burkhart BD, Lamerson PM, Gillham NW (1987) Transmission of mitochondrial and chloroplast genomes in crosses of Chlamydomonas. Proc Natl Acad Sci USA 84:2391-2395
3. Coleman AW, Mai JC (1997) Ribosomal DNA ITS-1 and ITS-2 sequence comparisons as a tool for predicting genetic relatedness. J Mol Evol 45:168-177
4. Dietmaier W, Fabry S, Huber H, Schmitt R (1995) Analysis of a family of ypt genes and their products from Chlamydomonas reinhardtii. Gene 158:41-50
5. Ferris PJ (1989) Characterization of a Chlamydomonas transposon, Gulliver, resembling those in higher plants. Genetics 122:363-377
6. Ferris PJ, Goodenough UW (1994) The mating type locus of Chlamydomonas reinhardtii contains highly rearranged DNA sequences. Cell 76:1135-1145
7. Ferris PJ, Woessner JP, Goodenough UW (1996) A sex recognition glycoprotein is encoded by the plus mating-type gene fus1 of Chlamydomonas reinhardtii. Mol Biol Cell 7:1235-1248
8. Ferris PJ, Pavlovic C, Fabry S, Goodenough UW (1997) Rapid evolution of sex related genes in Chlamydomonas. Proc Natl Acad Sci USA 94:8634-8639
9. Goodenough UW, Armbrust EV, Cambell AM, Ferris PJ (1995) Molecular genetics of sexuality in Chlamydomonas. Annu Rev Plant Physiol Plant Mol Biol 46:21-44
10. Gross CH, Ranum LPW, Lefebvre PA (1988) Extensive restriction fragment length polymorphisms in a new isolate of Chlamydomonas reinhardtii. Curr Genet 13:503-508
11. Hails T, Jobling M, Day A (1993) Large arrays of tandemly repeated DNA sequences in the green alga Chlamydomonas reinhardtii. Chromosoma 102:500-507
12. Harris EH (1989) The Chlamydomonas sourcebook. Academic Press, San Diego
13. Harris EH (2001) Chlamydomonas as a model organism. Annu Rev Plant Physiol Plant Mol Biol 52:363-406
14. Harris EH, Boynton JE, Gillham NW, Burkhart BD, Newman SM (1991) Chloroplast genome organization in Chlamydomonas. Arch Protistenkd 139:183-192
15. Hoshaw RW, Ettl H (1966) Chlamydomonas smithii sp. nov.: a chlamydomonad interfertile with Chlamydomonas reinhardtii. J Phycol 2:93-96
16. Kinoshita T, Fukuzawa H, Shimada T, Saito T, Matsuda Y (1992) Primary structure and expression of a gamete lytic enzyme in Chlamydomonas reinhardtii: similarity of functional domains to matrix metalloproteases. Proc Natl Acad Sci USA 89:4693-4697
17. Kubo T, Saito T, Fukuzawa H, Matsuda Y (2001) Two tandemly located matrix metalloprotease genes with different expression patterns in the Chlamydomonas sexual cell cycle. Curr Genet 40:136-143
18. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245
19. Lefebvre PA, Silflow CD (1999) Chlamydomonas: The cell and its genomes. Genetics 151:9-14
20. Liss M, Kirk DL, Beyser K, Fabry S (1997) Intron sequences provide a tool for high-resolution phylogenetic analysis of volvocine algae. Curr Genet 31:214-227
21. Matsuda Y (1998) Gametolysin. In: Barrett A, Woessner F, Rawlings N (eds) Handbook of proteolytic enzymes. Academic Press, London, pp 1140-1143
22. Quarmby L (2000) Meeting report: ninth international conference on the cell and molecular biology of Chlamydomonas. Protist 151:193-199
23. Ranum LPW, Thompson MD, Schloss JA, Lefebvre PA, Silflow CD (1988) Mapping flagellar genes in Chlamydomonas using restriction fragment length polymorphisms. Genetics 120:109-122
24. Sack L, Zeyl C, Bell G, Sharbel T, Reboud X, Bernhardt T, Koelewyn H (1994) Isolation of four new strains of Chlamydomonas reinhardtii (Chlorophyta) from soil samples. J Phycol 30:770-773
25. Saito T, Matsuda Y (1991) Isolation and characterization of Chlamydomonas temperature-sensitive mutants affecting gametic differentiation under nitrogen-starved conditions. Curr Genet 19:65-71
26. Saito T, Inoue M, Yamada M, Matsuda Y (1998) Control of gametic differentiation and activity by light in Chlamydomonas reinhardtii. Plant Cell Physiol 39:8-15
27. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
28. Silflow CD (1998) Organization of the nuclear genome. In: Rochaix J-D, Goldschmidt-Clermont M, Merchant S (eds) The molecular biology of chloroplasts and mitochondria in Chlamydomonas. Kluwer, Dordrecht, pp 25-40
29. Spanier JG, Graham JE, Jarvik JW (1992) Isolation and preliminary characterization of three Chlamydomonas strains interfertile with Chlamydomonas reinhardtii (Chlorophyta). J Phycol 28:822-828
30. Vysotskaia VS, Curtis DE, Voinov AV, Kathir P, Silflow CD, Lefebvre PA (2001) Development and characterization of genome-wide single nucleotide polymorphism markers in the green alga Chlamydomonas reinhardtii. Plant Physiol 127:386-389