Assessment of the C4 phosphoenolpyruvate carboxylase gene diversity in grasses (Poaceae)

Theoretical and Applied Genetics

Volumn 105, Issue 2-3, 2002, Pages 404-412

  Besnard, G ^a   Offmann, B ^a   Robert, C ^a   Rouch, C ^a   Cadet, F ^a  

^a UNIVERSITÉ DE LA RÉUNION   (France)

Author keywords

C4 photosynthesis; cDNA sequence; Phosphoenolpyruvate carboxylase; Phylogeny; Poaceae

Indexed keywords

CARBON; DNA; ENZYMES; PHOTOSYNTHESIS;

GRASSES;

GENETIC ENGINEERING;

ARUNDINOIDEAE; CHLORIDOIDEAE; EMBRYOPHYTA; PANICOIDEAE; POACEAE;

EID: 0036943397     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-001-0851-7     Document Type: Article

References (41)

1. Albert HA, Martin T, Sun SSM (1992) Structure and expression of a sugarcane gene encoding a housekeeping phospoenolpyruvate carboxylase. Plant Mol Biol 20:663-671
2. Atanassova R, Favet N, Martz F, Chabbert B, Tollier MT, Monties B, Fritig B, Legrand M (1995) Altered lignin composition in transgenic tobacco expressing O-methyltransferase sequences in sense and antisense orientation. Plant J 8:465-477
3. 4 photosynthetic pathway evolution in grasses. Proc XIIth Int Congress of Photosynthesis, Brisbane, Australia, August 2001 (in press)
4. Besnard G, Robert C, Rondeau P, Baret P, Rouch C, Cadet F (2001) Phosphoenolpyruvate carboxylase gene expression in the sugarcane. Proc 2nd Symp Sci Res Indian Ocean, Reduit, Mauritius, April 2001, J Nature (in press)
5. Cesari M, Caillens H, Cadet F, Pabion M (1999) In vivo analysis of HLA-DQ gene expression in heterozygous cell lines. Immunogenetics 50:309-318
6. Clark LG, Zhang W, Wendel JF (1995) A phylogeny of the grass family (Poaceae) based on ndhF sequence data. Syst Bot 20:436-460
7. Clayton WD, Renvoize SA (1986) Genera Graminum: Grasses of the world. Kew Bull 13:1-389
8. Clegg MT, Cummings MP, Durbin ML (1997) The evolution of plant nuclear genes. Proc Natl Acad Sci USA 94:7791-7798
9. Crétin C, Santi S, Keryer E, Lepiniec L, Tagu D, Vidal J, Gadal P (1991) The phosphoenolpyruvate carboxylase gene family in sorghum: Promoter structure, amino acid sequences and expression of genes. Gene 99:87-94
10. Cummings MP, King LM, Kellogg EA (1994) Slipped-strand mispairing in a plastid gene: rpoC2 in grasses (Poaceae). Mol Biol Evol 11:1-8
11. Davis JI, Soreng RJ (1993) Phylogenetic structure in the grass family (Poaceae) as inferred from chloroplast DNA restriction site variation. Am J Bot 80:1444-1454
12. 4-form enzyme. Plant Cell Physiol 39:865-873
13. Duvall MR, Morton BR (1996) Molecular phylogeny of Poaceae: An expanded analysis of rbcL sequence data. Mol Phylogenet Evol 5:352-358
14. Felsenstein J (1981) Evolution trees from DNA sequences: A maximum-likelihood approach. J Mol Evol 17:368-376
15. Gaut BS, Peek AS, Morton BR, Clegg MT (1999) Patterns of genetic diversification within the Adh gene family in the grasses (Poaceae). Mol Biol Evol 16:1086-1097
16. Gehrig HH, Heute V, Kluge M (2001) New partial sequences of phosphoenolpyruvate carboxylase as molecular phylogenetic markers. Mol Phylogenet Evol 20:262-274
17. Hamby RK, Zimmer EA (1988) Ribosomal RNA sequences for inferring phylogeny within the grass family (Poaceae). Plant Syst Evol 160:29-37
18. Hatch MD, Slack CR (1966) Photosynthesis by sugar cane leaves. A new carboxylation reaction and the pathway of sugar formation. Biochem J 101:103-111
19. Hilu KW, Alice LA (1999) Evolutionary implications of matK indels in Poaceae. Am J Bot 86:1735-1741
20. Hilu KW, Alice LA, Liang H (1999) Phylogeny of Poaceae inferred from matk sequences. Ann Mo Bot Gard 86:835-851
21. Hsiao C, Jacobs SWL, Chatterton NJ, Asay KH (1999) A molecular phylogeny of the grass family (Poaceae) based on the sequences of nuclear ribosomal DNA (ITS). Austral Syst Bot 11:667-688
22. 4 photosynthesis. Plant Mol Biol 12:579-589
23. 4-pathway from maize. Nucleic Acids Res 14:1615-1628
24. 4 photosynthesis in maize: Comparison of its cDNA sequence with a newly isolated cDNA encoding an isozyme involved in the anaplerotic function. J Biochem 112:147-154
25. Kellogg EA (2000) The grasses: A case study in macroevolution. Annu Rev Ecol Syst 31:217-238
26. 4 photosynthesis genes. Plant Physiol 111:949-957
27. Ku MSB, Agarie S, Nomura M, Fukayama H, Tsuchida H, Ono K, Hirose S, Toki S, Miyao M, Matsuoka M (1999) High-level expression of maize phosphoenolpyruvate carboxylase in transgenic rice plants. Nat Biotechnol 17:76-80
28. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: Molecular evolutionary genetics analysis software. Biometrics 17:1244-1245
29. Lepiniec L, Santi S, Keryer E, Amiet V, Vidal J, Gadal P, Crétin C (1991) Complete nucleotide sequence of one member of the Sorghum phosphoenolpyruvate carboxylase gene family. Plant Mol Biol 17:1077-1079
30. Lepiniec L, Vidal J, Chollet R, Gadal P, Crétin C (1994) Phosphoenolpyruvate carboxylase: Structure, regulation and evolution. Plant Sci 99:111-124
31. Mason-Garner RJ, Weil CF, Kellogg EA (1998) Granule-bound starch synthase: Structure, function and phylogenetic utility. Mol Biol Evol 15:1658-1673
32. Mathews S, Sharrock RA (1996) The phytochrome gene family in grasses (Poaceae): A phylogeny and evidence that grasses have a subset of the loci found in dicot Angiosperms. Mol Biol Evol 13:1141-1150
33. Mathews S, Tsai RC, Kellogg EA (2000) Phylogenetic structure in the grass family (Poaceae): Evidence from the nuclear gene phytochrome B. Am J Bot 87:96-107
34. Nadot S, Bajon R, Lejeune B (1994) The chloroplast gene rps4 as a tool for the study of Poaceae phylogeny. Plant Syst Evol 191:27-38
35. Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3:418-426
36. 4 photosynthesis in the grass family. Am J Bot 83:1458-1470
37. Soreng RJ, Davis JI (1998) Phylogenetics and character evolution in the grass family (Poaceae): Simultaneous analysis of morphological and chloroplast DNA restriction site character sets. Bot Rev 64:1-85
38. Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalities and weight matrix choice. Nucleic Acids Res 22:4673-4680
39. Watson L, Dallwitz MJ (1992) Grass Genera of the World: Descriptions, Illustrations, Identification, and Information Retrieval. http://biodiversity.uno.edu/delta/
40. Zhang L, Pond SK, Gaut BS (2001) A survey of the molecular evolutionary dynamics of twenty-five multigene families from four grass taxa. J Mol Evol 52:144-156
41. Zhang W (2000) Phylogeny of the grass family (Poaceae) from rpl16 intron sequence data. Mol Phylogenet Evol 15:135-146