Pressure dependence of the photocycle kinetics of bacteriorhodopsin

Biophysical Journal

Volumn 83, Issue 6, 2002, Pages 3490-3498

  Klink, Björn U ^a   Winter, R ^b   Engelhard, M ^a   Chizhov, I ^a  

^a MAX PLANCK INSTITUTE OF MOLECULAR PHYSIOLOGY   (Germany)

^b TU DORTMUND UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIORHODOPSIN;

ARTICLE; CONTROLLED STUDY; EQUILIBRIUM CONSTANT; HALOBACTERIUM SALINARUM; KINETICS; MODEL; NONHUMAN; PHASE TRANSITION; PRESSURE; SERODIAGNOSIS; SPECTROSCOPY;

HALOBACTERIUM SALINARUM;

EID: 0036931523     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(02)75348-4     Document Type: Article

References (34)

1. Althaus, T., and M. Stockburger. 1998. Time and pH dependence of the L-to-M transition in the photocycle of bacteriorhodopsin and its correlation with proton release. Biochemistry. 37:2807-2817.
2. Balashov, S. P. 2000. Protonation reactions and their coupling in bacteriorhodopsin. Biochim. Biophys. Acta. Bioenerg. 1460:75-94.
3. Barnett, S. M., C. M. Edwards, I. S. Butler, and I. W. Levin. 1997. Pressure-induced transmembrane α(II)- to α(I)-helical conversion in bacteriorhodopsin: An infrared spectroscopic study. J. Phys. Chem. B. 101:9421-9424.
4. Betancourt, F. M. H., and R. M. Glaeser. 2000. Chemical and physical evidence for multiple functional steps comprising the M state of the bacteriorhodopsin photocycle. Biochim. Biophys. Acta. Bioenerg. 1460:106-118.
5. Brandsburg-Zabary, S., O. Fried, Y. Marantz, E. Nachliel, and M. Gutman. 2000. Biophysical aspects of intra-protein proton transfer. Biochim. Biophys. Acta. 1458:120-134.
6. Braslavsky, S. E., and G. E. Heibel. 1992. Time-resolved photothermal and photoacoustic methods applied to photoinduced processes in solution. Chem. Rev. 92:1381-1410.
7. Checover, S., Y. Marantz, E. Nachliel, M. Gutman, M. Pfeiffer, J. Tittor, D. Oesterhelt, and N. A. Dencher. 2001. Dynamics of the proton transfer reaction on the cytoplasmic surface of bacteriorhodopsin. Biochemistry. 40:4281-4292.
8. Chizhov, I., D. S. Chenavskii, M. Engelhard, K. H. Müller, B. V. Zubov, and B. Hess. 1996. Spectrally silent transitions in the bacteriorhodopsin photocycle. Biophys. J. 71:2329-2345.
9. Chizhov, I., and M. Engelhard. 2001. Temperature and halide dependence of the photocycle of halorhodopsin from Natronobacterium pharaonis. Biophys. J. 81:1600-1612.
10. Chizhov, I., G. Schmies, R. Seidel, J. R. Sydor, B. Lüttenberg, and M. Engelhard. 1998. The photophobic receptor from Natronobacterium pharaonis: Temperature and pH dependencies of the photocycle of sensory rhodopsin II. Biophys. J. 75:999-1009.
11. Gottschalk, M., N. A. Dencher, and B. Halle. 2001. Microsecond exchange of internal water molecules in bacteriorhodopsin, J. Mol. Biol. 311:605-621.
12. Gross, M., and R. Jaenicke. 1994. Proteins under pressure: The influence of high hydrostatic pressure on structure, function and assembly of proteins and protein complexes. Eur. J. Biochem. 221:617-630.
13. Jackson, W. B., N. M. Amer, A. C. Boccara, and D. Fournier. 1981. Photothermal deflection spectroscopy and detection. Biophys. J. 20:1333-1344.
14. Lozier, R. H., R. A. Bogomolni, and W. Stoeckenius. 1975. Bacteriorhodopsin: A light-driven proton pump in Halobacterium halobium. Biophys. J. 15:955.
15. Marque, J., and L. Eisenstein. 1984. Pressure effects on the photocycle of purple membrane. Biochemistry. 23:5556-5563.
16. Mozhaev, V. V., K. Heremans, J. Frank, P. Masson, and C. Balny. 1996. High pressure effects on protein structure and function. Proteins. 24:81-91.
17. Müller, K.-H., H. J. Butt, E. Bamberg, K. Fendler, B. Hess, F. Siebert, and M. Engelhard. 1991. The reaction cycle of bacteriorhodopsin: An analysis using visible absorption, photocurrent and infrared techniques. Eur. Biophys. J. 19:241-251.
18. Müller, K.-H., and Th. Plesser. 1991. Variance reduction by simultaneous multi-exponential analysis of data sets from different experiments. Eur. Biophys. J. 19:231-240.
19. Nagle, J. F. 1991. Solving complex photocycle kinetics: Theory and direct method. Biophys. J. 59:476-487.
20. Oesterhelt, D., and W. Stoeckenius. 1971. Rhodopsin-like protein from the purple membrane of Halobacterium halobium. Nat. New Biol. 233:149-152.
21. Oesterhelt, D., and W. Stoeckenius. 1974. Isolation of the cell membrane of Halobacterium halobium and its fractionation into red and purple membrane. Methods Enzymol. 31:667-678.
22. Parodi, L. A., R. H. Lozier, S. M. Bhattacharjee, and J. F. Nagle. 1984. Testing kinetic models for the bacteriorhodopsin photocycle: II. Inclusion of an o to m backreaction. Photochem. Photobiol. 40:4.
23. Schulenberg, P. J., W. Gärtner, and S. E. Braslavsky. 1995. Time-resolved volume changes during the bacteriorhodopsin photocycle: A photothermal beam deflection study. J. Phys. Chem. 99:9617-9624.
24. Schulenberg, P. J., M. Rohr, W. Gärtner, and S. E. Braslavsky. 1994. Photoinduced volume changes associated with the early transformations of bacteriorhodopsin: A laser-induced optoacoustic spectroscopy study. Biophys. J. 66:838-843.
25. Spassov, V. Z., H. Luecke, K. Gerwert, and D. Bashford. 2001. pK(a) calculations suggest storage of an excess proton in a hydrogen-bonded water network in bacteriorhodopsin. J Mol. Biol. 312:203-219.
26. Svishchev, I. M., and A. Y. Zassetsky. 2000. Three-dimensional picture of dynamical structure in liquid water. J. Chem. Physics. 112:1367-1372.
27. Tsuda, M., and T. G. Ebrey. 1980. Effect of high pressure on the absorption spectrum and isomeric composition of bacteriorhodopsin. Biophys. J. 30:149-157.
28. Tsuda, M., R. Govindjee, and T. G. Ebrey. 1983. Effects of pressure and temperature on the M412 intermediate of the bacteriorhodopsin photocycle implications for the phase transition of the purple membrane. Biophys. J. 44:249-254.
29. Van Eldik, R., T. Asano, and W. J. Le Noble. 1989. Activation and reaction volumes in solution 2. Chem. Rev. 89:549-688.
30. Váró, G., and J. K. Lanyi. 1995. Effects of hydrostatic pressure on the kinetics reveal a volume increase during the bacteriorhodopsin photocycle. Biochemistry. 34:12161-12169.
31. Wang, J., and M. A. El Sayed. 2000. The effect of protein conformation change from α(II) to α(I) on the bacteriorhodopsin photocycle. Biophys. J. 78:2031-2036.
32. Winter, R., and J. Jonas, editors. 1999. High Pressure Molecular Science. Kluwer Academic Publishers, Dordrecht, The Netherlands.
33. Woenckhaus, J., R. Köhling, R. Winter, P. Thiyagarajan, and S. Finet. 2000. High pressure-jump apparatus for kinetic studies of protein folding reactions using the small-angle synchrotron x-ray scattering technique. Rev. Sci. Instrum. 71:3895-3899.
34. Zimányi, L., G. Váró, M. Chang, B. Ni, R. Needleman, and J. K. Lanyi. 1992. Pathways of proton release in the bacteriorhodopsin photocycle. Biochemistry. 31:8535-8543.