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Volumn 83, Issue 6, 2002, Pages 2906-2917

Molecular dynamics simulations of a hydrated protein vectorially oriented on polar and nonpolar soft surfaces

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME C; HEME; IRON; PROTEIN; WATER;

EID: 0036923706     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(02)75300-9     Document Type: Article
Times cited : (37)

References (28)
  • 1
    • 0000324433 scopus 로고
    • The crystal structure of methyl stearate
    • Aleby, S., and E. von Sydow. 1960. The crystal structure of methyl stearate. Acta Crystallogr. 13:487-492.
    • (1960) Acta Crystallogr. , vol.13 , pp. 487-492
    • Aleby, S.1    Von Sydow, E.2
  • 3
    • 0001041190 scopus 로고
    • Use of self-assembled monolayers to covalently tether protein monolayers to the surface of solid substrates
    • Amador, S. M., J. M. Pachence, R. Fischetti, J. P. McCauley, Jr., A. B. Smith, I. I. I., and J. K. Blasie. 1993. Use of self-assembled monolayers to covalently tether protein monolayers to the surface of solid substrates. Langmuir. 9:812-817.
    • (1993) Langmuir , vol.9 , pp. 812-817
    • Amador, S.M.1    Pachence, J.M.2    Fischetti, R.3    McCauley J.P., Jr.4    Smith A.B. III5    Blasie, J.K.6
  • 4
    • 0029855438 scopus 로고    scopus 로고
    • Three-dimensional solution structure of saccharomyces cerevisiae reduced iso-1-cytochrome c
    • Baistrocchi, P., L. Banci, I. Bertini, P. Turano, K. L. Bren, and H. B. Gray. 1996. Three-dimensional solution structure of saccharomyces cerevisiae reduced iso-1-cytochrome c. Biochemistry. 35:13788-13796.
    • (1996) Biochemistry , vol.35 , pp. 13788-13796
    • Baistrocchi, P.1    Banci, L.2    Bertini, I.3    Turano, P.4    Bren, K.L.5    Gray, H.B.6
  • 6
    • 33845183124 scopus 로고
    • Energetics and hydration of the constituent ion pairs of tetramethylammonium chloride
    • Buckner, J. K., and W. L. Jorgensen. 1989. Energetics and hydration of the constituent ion pairs of tetramethylammonium chloride. J. Phys. Chem. 111:2507-2516.
    • (1989) J. Phys. Chem. , vol.111 , pp. 2507-2516
    • Buckner, J.K.1    Jorgensen, W.L.2
  • 8
    • 0012343740 scopus 로고
    • STM analysis of cytochrome c immobilized on self-assembled monolayers on gold
    • R. J. Colton, A. Engel, J. E. Frommer, H. E. Gaub, A. A. Gewirth, R. Guckenberger, J. Rabe, W. M. Heckl, B. Parkinson, editors. John Wiley and Son, Chichester, UK
    • Delamarche, E., H. Biebuyck, B. Michael, G. Sundarababu, H. Sigrist, H. Wolf, and H. Ringsdorf. 1995. STM analysis of cytochrome c immobilized on self-assembled monolayers on gold. In Procedures in Scanning Probe Microscopies. R. J. Colton, A. Engel, J. E. Frommer, H. E. Gaub, A. A. Gewirth, R. Guckenberger, J. Rabe, W. M. Heckl, B. Parkinson, editors. John Wiley and Son, Chichester, UK.
    • (1995) Procedures in Scanning Probe Microscopies
    • Delamarche, E.1    Biebuyck, H.2    Michael, B.3    Sundarababu, G.4    Sigrist, H.5    Wolf, H.6    Ringsdorf, H.7
  • 9
    • 1842327453 scopus 로고    scopus 로고
    • Molecular orientation distributions in protein films: I. Cytochrome c adsorbed to substrates of variable surface chemistry
    • Edmiston, P. L., J. E. Lee, S. S. Cheng, and S. S. Saavedra. 1997. Molecular orientation distributions in protein films: I. Cytochrome c adsorbed to substrates of variable surface chemistry. J. Am. Chem. Soc. 119:560-570.
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 560-570
    • Edmiston, P.L.1    Lee, J.E.2    Cheng, S.S.3    Saavedra, S.S.4
  • 10
    • 0033637458 scopus 로고    scopus 로고
    • Heme structure and orientation in single monolayers of cytochrome c on polar and nonpolar soft surfaces
    • Edwards, A. M., K. Zhang, C. E. Nordgren, and J. K. Blasie. 2000. Heme structure and orientation in single monolayers of cytochrome c on polar and nonpolar soft surfaces. Biophys. J. 79:3105-3117.
    • (2000) Biophys. J. , vol.79 , pp. 3105-3117
    • Edwards, A.M.1    Zhang, K.2    Nordgren, C.E.3    Blasie, J.K.4
  • 12
    • 0000476195 scopus 로고
    • An Ewald summation method for planar surfaces and interfaces
    • Hautman, J., and M. L. Klein. 1992. An Ewald summation method for planar surfaces and interfaces. Mol. Phys. 75:379-395.
    • (1992) Mol. Phys. , vol.75 , pp. 379-395
    • Hautman, J.1    Klein, M.L.2
  • 13
    • 0001156309 scopus 로고
    • Intermolecular potential functions and Monte Carlo simulations for liquid sulfur compounds
    • Jorgensen, W. L. 1986. Intermolecular potential functions and Monte Carlo simulations for liquid sulfur compounds. J. Phys. Chem. 90:6379-6388.
    • (1986) J. Phys. Chem. , vol.90 , pp. 6379-6388
    • Jorgensen, W.L.1
  • 15
    • 0035041091 scopus 로고    scopus 로고
    • Hydration state of a single cytochrome c monolayer vectorially-oriented at a soft interface investigated via neutron interferometry
    • Kneller, L. R., A. M. Edwards, C. F. Majkrzak, N. F. Berk, S. Krueger, and J. K. Blasie. 2001. Hydration state of a single cytochrome c monolayer vectorially-oriented at a soft interface investigated via neutron interferometry. Biophys. J. 80:2248-2261.
    • (2001) Biophys. J. , vol.80 , pp. 2248-2261
    • Kneller, L.R.1    Edwards, A.M.2    Majkrzak, C.F.3    Berk, N.F.4    Krueger, S.5    Blasie, J.K.6
  • 16
    • 0025146477 scopus 로고
    • High-resolution refinement of yeast iso-1-cytochrome c and comparison with other eukaryotic cytochromes c
    • Louie, G. V., and G. D. Brayer. 1990. High-resolution refinement of yeast iso-1-cytochrome c and comparison with other eukaryotic cytochromes c. J. Mol. Biol. 214:527-555.
    • (1990) J. Mol. Biol. , vol.214 , pp. 527-555
    • Louie, G.V.1    Brayer, G.D.2
  • 17
    • 36449000062 scopus 로고
    • Nosé-Hoover chains: The canonical ensemble via continuous dynamics
    • Martyna, G. J., M. L. Klein, and M. Tuckerman. 1992. Nosé-Hoover chains: The canonical ensemble via continuous dynamics. J. Chem. Phys. 97:2635-2643.
    • (1992) J. Chem. Phys. , vol.97 , pp. 2635-2643
    • Martyna, G.J.1    Klein, M.L.2    Tuckerman, M.3
  • 18
    • 0025171036 scopus 로고
    • Orientation and lateral mobility of cytochrome c on the surface of ultrathin lipid multilayer films
    • Pachence, J. M., S. Amador, G. Maniara, J. Vanderkooi, P. L. Dutton, and J. K. Blasie. 1990. Orientation and lateral mobility of cytochrome c on the surface of ultrathin lipid multilayer films. Biophys. J. 58:379-389.
    • (1990) Biophys. J. , vol.58 , pp. 379-389
    • Pachence, J.M.1    Amador, S.2    Maniara, G.3    Vanderkooi, J.4    Dutton, P.L.5    Blasie, J.K.6
  • 19
    • 0023445355 scopus 로고
    • The location of cytochrome c on the surface of ultrathin lipid multilayer films using x-ray diffraction
    • Pachence, J. M., and J. K. Blasie. 1987. The location of cytochrome c on the surface of ultrathin lipid multilayer films using x-ray diffraction. Biophys. J. 52:735-747.
    • (1987) Biophys. J. , vol.52 , pp. 735-747
    • Pachence, J.M.1    Blasie, J.K.2
  • 20
    • 0025854075 scopus 로고
    • Structural investigation of the covalent and electrostatic binding of yeast cytochrome c to the surface of various ultrathin lipid multilayers using x-ray diffraction
    • Pachence, J. M., and J. K. Blasie. 1991. Structural investigation of the covalent and electrostatic binding of yeast cytochrome c to the surface of various ultrathin lipid multilayers using x-ray diffraction. Biophys. J. 59:894-900.
    • (1991) Biophys. J. , vol.59 , pp. 894-900
    • Pachence, J.M.1    Blasie, J.K.2
  • 21
    • 0024708265 scopus 로고
    • Location of the heme-Fe atoms within the profile structure of a monolayer of cytochrome c bound to the surface of an ultrathin lipid multilayer film
    • Pachence, J. M., R. F. Fischetti, and J. K. Blasie. 1989. Location of the heme-Fe atoms within the profile structure of a monolayer of cytochrome c bound to the surface of an ultrathin lipid multilayer film. Biophys. J. 56:327-337.
    • (1989) Biophys. J. , vol.56 , pp. 327-337
    • Pachence, J.M.1    Fischetti, R.F.2    Blasie, J.K.3
  • 23
    • 33646940952 scopus 로고
    • Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
    • Ryckaert, J.-P., G. Ciccotti, and H. J. C. Berendsen. 1977. Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes. J. Comp. Phys. 23:327-341.
    • (1977) J. Comp. Phys. , vol.23 , pp. 327-341
    • Ryckaert, J.-P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 24
    • 0029769798 scopus 로고    scopus 로고
    • Molecular dynamics simulations of a protein on hydrophobic and hydrophilic surfaces
    • Tobias, D. J., W. Mar, J. K. Blasie, and M. L. Klein. 1996. Molecular dynamics simulations of a protein on hydrophobic and hydrophilic surfaces. Biophys. J. 71:2933-2941.
    • (1996) Biophys. J. , vol.71 , pp. 2933-2941
    • Tobias, D.J.1    Mar, W.2    Blasie, J.K.3    Klein, M.L.4
  • 25
    • 0030813468 scopus 로고    scopus 로고
    • Assessment of all-atom potentials for modeling membranes: Molecular dynamics simulations of solid and liquid alkanes and crystals of phospholipid fragments
    • Tobias, D. J., K. Tu, and M. L. Klein. 1997. Assessment of all-atom potentials for modeling membranes: Molecular dynamics simulations of solid and liquid alkanes and crystals of phospholipid fragments. J. Chem. Phys. 94:1482-1502.
    • (1997) J. Chem. Phys. , vol.94 , pp. 1482-1502
    • Tobias, D.J.1    Tu, K.2    Klein, M.L.3
  • 26
    • 0036154674 scopus 로고    scopus 로고
    • Orientational distributions for cytochrome c on polar and nonpolar soft surfaces by polarized total internal reflection fluorescence
    • Tronin, A., A. M. Edwards, J. Vanderkooi, and J. K. Blasie. 2002. Orientational distributions for cytochrome c on polar and nonpolar soft surfaces by polarized total internal reflection fluorescence. Biophys. J. 82:996-1003.
    • (2002) Biophys. J. , vol.82 , pp. 996-1003
    • Tronin, A.1    Edwards, A.M.2    Vanderkooi, J.3    Blasie, J.K.4
  • 27
    • 0028267498 scopus 로고
    • Structure characterization of membrane bound and surface adsorbed protein
    • Wang, J., C. J. A. Wallace, I. Clark-Lewis, and M. Caffrey. 1994. Structure characterization of membrane bound and surface adsorbed protein. J. Mol. Biol. 237:1-4.
    • (1994) J. Mol. Biol. , vol.237 , pp. 1-4
    • Wang, J.1    Wallace, C.J.A.2    Clark-Lewis, I.3    Caffrey, M.4
  • 28
    • 1842365512 scopus 로고    scopus 로고
    • Molecular orientation distributions in protein films: II. Site-directed immobilization of yeast cytochrome c on thiol-capped self-assembled monolayers
    • Wood, L. L., S. S. Cheng, P. L. Edmiston, and S. S. Saavedra. 1997. Molecular orientation distributions in protein films: II. Site-directed immobilization of yeast cytochrome c on thiol-capped self-assembled monolayers. J. Am. Chem. Soc. 119:571-576.
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 571-576
    • Wood, L.L.1    Cheng, S.S.2    Edmiston, P.L.3    Saavedra, S.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.