Phylogenetic relationships of the genus Secale based on the characterisation of rDNA ITS sequences

Plant Systematics and Evolution

Volumn 235, Issue 1-4, 2002, Pages 147-154

  De Bustos, Alfredo ^a   Jouve, Nicolás ^a  

^a UNIVERSITY OF ALCALÁ   (Spain)

Author keywords

5.8 rDNA; ITS; Secale

Indexed keywords

ELYMUS; EMBRYOPHYTA; INSECTA; SECALE; SECALE CEREALE; SECALE STRICTUM; SECALE SYLVESTRE; SECALE VAVILOVII;

EID: 0036913787     PISSN: 03782697     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00606-002-0215-z     Document Type: Article

References (35)

1. Bedbrook J. R., Jones J., O'Dell M., Thompson R. D., Flavell R. B. (1980) A molecular description telomeric heterochromatin in Secale species. Cell 19: 545-560.
2. Buckler I. E. S., Holtsford T. P. (1996) Zea systematics: Ribosomal ITS evidence. Molec. Biol. Evol. 13: 612-622.
3. Buckler I. E. S., Ippolito A., Holtsford T. P. (1997) The evolution of ribosomal DNA: Divergent paralogues and phylogenetic implications. Genetics 145: 821-832.
4. Cuadrado A., Jouve, N. (1997) Distribution of highly repeated DNA sequences in species of the genus Secale. Genome 40: 309-317.
5. De Bustos A., Loarce Y., Jouve N. (2002) Species relationships between antifungal chitinase and nuclear rDNA (internal transcribed spacer) sequences in the genus Hordeum. Genome 45: 339-347.
6. Del Pozo J. C., Figueiras A. M., Benito C. De La Peña A. (1995) PCR derived molecular markers and phylogenetic relationships in the Secale genus. Biologia Plantarum 37 (4): 481-489.
7. Farris J. S. (1989a) The retention index and homoplasy excess. Syst. Zool. 38: 406-407.
8. Farris J. S. (1989b) The retention index and the rescaled consistency index. Cladistics 5: 417-419.
9. Felsenstein J. (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
10. Felsenstein J. (1993) PHYLIP (Phylogeny Inference Package). Version 3.5c. Distributed by the author, Department of Genetics. University of Washington, Seattle.
11. Gielly L., Taberlet P. (1994) The use of choloroplast DNA to resolve plant phylogenies: Noncoding versus rbcL sequences. Molec. Biol. Evol, 11: 769-777.
12. Gielly L., Yuan Y. M., Küpfer P., Taberlet P. (1996) Phylogenetic use of noncoding regions in the genus Gentiana L.: Choloroplast trnL (UAA) intron versus nuclear ribosomal internal transcribed spacer sequences. Molec. Phylog. Evol. 5: 460-466.
13. Hammer K., Skolimowska E., Knüpffer H. (1987) Vorarbeiten zur monographischen Darstellung von Wildpflanzensortimenten: Secale L. Kulturpflanze 35: 135-177.
14. Hammer K. (1990) Breeding system and phylogenetic relationships in Secale L. Biol. Zentralbl. 109: 45-50.
15. Hillis D. M., Moritz C., Porter C. A., Baker R. J. (1991) Evidence for biased gene conversion in concerted evolution of ribosomal DNA. Science 251: 308-310.
16. Hsiao C., Chatterton N. J., Asay K. H., Jensen K. B. (1994) Phylogenetic relationships of 10 grass species: An assessment of phylogenetic utility of the internal transcribed spacer region in nuclear ribosomal DNA in monocots. Genome 37: 112-120.
17. Hsiao C., Chatterton N. J., Asay K. H., Jensen K. B. (1995) Phylogenetic relationships of the monogenomic species of the wheat tribe, Triticeae (Poaceae), inferred from nuclear rDNA (internal transcribed spacer) sequences. Genome 38: 211-223.
18. Jones J. D. G., Flavell R. B. (1982) The structure, amount and chromosomal localization of defined repeated DNA sequences in species of the genus Secale. Chromosome 86: 613-641.
19. Käss E., Wink M. (1997) Phylogenetic relationships in the Papilionoideae (family Leguminosae) based on nucleotide sequences of cpDNA (rbcL) and ncDNA (ITS 1 and 2). Molec. Phylog. Evol. 8: 65-88.
20. Khush G. S. (1962) Cytogenetic and evolutionary studies in Secale, II. Interrelationships in the wild species. Evolution 16: 484-496.
21. Kimura M. (1980) A simple method for estimating evolutionary rates of nucleotide substitutions through comparative studies of nucleotide sequence. J. Molec. Evol. 16: 111-120.
22. Odorico D. M., Miller D. J. (1997) Variation in the ribosomal internal transcribed spacers and 5.8 rDNA among five species of Acropora (Cnidaria; Scleractinia): Patterns of variation consistent with reticulate evolution. Molec. Biol. Evol. 14: 465-473.
23. Roshevitz R. Y. (1947) A monograph of the wild, weedy and cultivated species of rye. Acta. Inst. Bot. Nonie Acad. Sci. USSR. Ser 1. F1 et Syst 6: 105-163.
24. Saenz de Miera L., Perez de la Vega M. (1998) A comparative study of vicilin genes in Lens: Evidence negative of concerted evolution. Molec. Biol. Evol. 15: 303-311.
25. Saitou N., Nei M. (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molec. Biol. Evol. 4: 406-425.
26. Sallares S., Brown T. A. (1999) PCR-based analysis of the intergenic spacers of the Nor loci on the A genomes of Triticum diploids and polyploids. Genome 42: 116-128.
27. Sharp P. J., Desai S., Gale M. D. (1988) Isozyme variation and RFLPs at the β-amylase loci in wheat. Theor. Appl. Genet. 76: 691-699.
28. Stutz H. C. (1972) On the origin of cultivated rye. Amer. J. Bot. 59: 59-70.
29. Swofford D. L. (1993) PAUP: Phylogenetic Analysis Using Parsimony Version 3.1 Illinois Natural Histroy Survey, Champaign, Ill.
30. Thompson J. D., Higgins D. G., Gibson T. J. (1994) Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting matrix choice. Nucleic Acids Res. 22: 4673-4680.
31. Vaughan H. E., Jamilena M., Ruiz C., Parker J. S., Garrido-Ramos M. A. (1993) Loss of nucleolar-organizer regions during polyploid evolution in Scilla autumnalis. Heredity 71: 574-580.
32. Vences F. J., Vaquero F., Perez de la Vega M. (1987a) Phylogenetic relationships in Secale: An isozymatic study. Plant Syst Evol 157: 33-47.
33. Vences F. J., Vaquero F., Garcia P., Perez de la Vega M. (1987b) Further studies on phylogenetic relationships in Secale: on the origin of its species. Plant Breeding 98: 281-291.
34. Wendel J. F., Schnabel A., Seelanan T. (1995) Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium). Proc. Natl. Acad. Sci. USA 92: 280-284.
35. White T. J., Burns T., Lee S., Taylor J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M. A., Gelfand D. H., Sninsky J. J., White T. J. (eds.) PCR Protocols. A Guide to Methods and Applications. Academic Press, New York, pp. 315-322.