Use of SINE retroposon in phylogeny;Éléments mobiles SINE en phylogénie

Medecine/Sciences

Volumn 18, Issue 12, 2002, Pages 1276-1281

  Huchon, Dorothée ^a   Nikaido, Masato ^a   Okada, Norihiro ^a  

^a TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EUKARYOTE; GENE DELETION; GENE INSERTION; GENE INSERTION SEQUENCE; GENE LOCATION; GENOME; METHODOLOGY; PHYLOGENY; RETROPOSON; REVIEW; SHORT INTERSPERSED REPEAT;

EUKARYOTA;

EID: 0036906501     PISSN: 07670974     EISSN: None     Source Type: Journal    
DOI: 10.1051/medsci/200218121276     Document Type: Review

References (25)

1. Jaeger JJ. Rodent phylogeny: New data and old problems, In: Benton MJ, ed. The Phylogeny and Classification of the Tetrapods. Oxford: Clarendon Press, 1988: 177-99.
2. Shedlock AM, Okada N. SINE insertions: Powerful tools for molecular systematics. BioEssays 2000; 22: 148-60.
3. Shedlock AM, Milinkovitch MC, Okada N. SINE evolution, missing data, and the origine of whales. Syst Biol 2000; 49: 808-17.
4. Hamdi H, Nishio H, Zielinski R, Dugaiczyk A. Origin and phylogenetic distribution of Alu DNA repeats: Irreversible events in the evolution of primates. J Mol Biol 1999; 289: 861-71.
5. Tatout C, Warwick S, Lenoir A, Deragon JM. SINE insertions as clade markers for wild crucifer species. Mol Biol Evol 1999; 16: 1614-21.
6. Batzer MA, Stoneking M, Alegria-Hartman M, et al. African origin of human-specific polymorphic Alu insertions. Proc Natl Acad Sci USA 1994; 91: 12288-92.
7. Novick GE, Novick CC, Yunis J, et al. Polymorphic alu insertions and the Asian origin of native American populations. Hum Biol 1998; 70: 23-39.
8. De Pancorbo MM, Lopez-Martinez M, Martinez-Bouzos C, et al. The Basques according to polymorphic Alu insertions. Hum Genet 2001; 109: 224-33.
9. International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature 2001; 409: 860-921.
10. Makalowski W. SINEs as a genomic scrap yard: An essay on genomic evolution. In: Marcia RJ, ed. The Impact of Short Interspersed Elements (SINEs) on the Host Genome. Austin: R.G. Landes Company, 1995: 81-104.
11. Okada N. SINEs: Short interspersed repeated elements of the eukaryotic genome. Trends Ecol Evol 1991; 6: 358-61.
12. Borodulina OR, Kramerov DA. Wide distribution of short interspersed elements among eukaryotic genomes. FEBS Lett 1999; 457: 409-13.
13. Lenoir A, Lavie L, Prieta JL, et al. The evolutionary origin and genomic organization of SINEs in Arabidopsis thaliana. Mol Biol Evol 2001; 18: 2315-22
14. Okada N, Hamada M, Ogiwara I, Ohshima K. SINEs and LINEs shore common 3′ sequences: A review. Gene 1997; 205: 229-43.
15. Jurka J. Sequence patterns indicate on enzymatic involvement in integration of mammalian retroposans. Proc Natl Acad Sci USA 1997; 94: 1872-7.
16. Tatout C, Lavie L, Deragon JM. Similar target site selection occurs in integration of plant and mammalian retroposons. J Mol Evol 1998; 47: 463-70.
17. Endoh H, Okada N. Total DNA transcription in vitro: A procedure to detect highly repetitive and transcribable sequences with tRNA-like structures. Proc Natl Acad Sci USA 1986; 83: 251-5.
18. Nikaido M, Rooney AP, Okada N. Phylogenetic relationships among cetartiodactyls based on insertions of short and long interspersed elements: Hippopotamuses are the closest extant relatives of wholes. Proc Natl Acad Sci USA 1999; 96:10261-6.
19. Philippe H, Laurent J. How good are deep phylogenetic trees? Curr Opin Genet Dev 1998; 8: 616-23.
20. Mooers AØ, Holmes EC. The evolution of base composition and phylogenetic inference. Trends Ecol Evol 2000; 15: 365-9.
21. Sullivan J, Swofford DL. Are guinea pigs rodents? The importance of adequate models in molecular phylogenetics. J Mammal Evol 1997; 4: 77-86.
22. Shimamura M, Yasue H, Ohshima K, et al. Molecular evidence from retroposon that whales form a clade within even-toed Ungulata. Nature 1997; 388: 666-70.
23. McKenna MC, Bell SK. Classification of Mammals Above the Species Level. New York: Columbia University Press, 1997: 632 p.
24. Montgelard C, Ducroq S, Douzery E. What is a suiforme (Artiodactyla)? Mol Phylogenet Evol 1998; 9: 528-32.
25. Nikaido M, Matsuno F, Hamilton H, et al. Retroposon analysis of major cetacean lineages: The monophyly of toothed whales and the paraphyly of river dolphins. Proc Natl Acad Sci USA 2001; 98: 7384-9.