Segmentation of microarray images by mathematical morphology

Real-Time Imaging

Volumn 8, Issue 6, 2002, Pages 491-505

  Hirata Jr , Roberto ^a   Barrera, Junior ^b   Hashimoto, Ronaldo F ^b   Dantas, Daniel O ^b   Esteves, Gustavo H ^c  

^a Centro Universitário SENAC   (Brazil)

^b UNIVERSITY OF SÃO PAULO   (Brazil)

^c Ludwig Institute for Cancer Reseach   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

BIOTECHNOLOGY; DNA; GENES; IMAGE ANALYSIS; RNA;

MICROARRAY IMAGES;

MATHEMATICAL MORPHOLOGY;

EID: 0036903817     PISSN: 10072014     EISSN: None     Source Type: Journal    
DOI: 10.1006/rtim.2002.0291     Document Type: Article

References (18)

1. Schena, M., Heller, R.A., Theriault, T.P., Konrad, K., Lachenmeier, E. & Davis, R.W. (1998) Microarrays: biotechnology's discovery platform for functional genomics. Trends in Biotechnology 16:301-306.
2. Schena, M., Shalon, D., Davis, R.W. & Brown, P.O. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270: 467-470.
3. Gonzalez, R.C. & Woods, R.E. (1992) Digital Image Processing. Reading, MA: Addison-Wesley Publishing Company.
4. Barrera, J., Banon, G.J.F., Lotufo, R.A. & Hirata Jr, R. (1998) MMach: a mathematical morphology toolbox for the Khoros system. Electronic Imaging 7: 174-210.
5. Soille, P. (1999) Morphological Image Analysis. Berlin: Springer-Verlag.
6. Pratt, W. Digital Image Processing, Chapter 18, Image Segmentation. New York: Wiley, pp. 597-627.
7. Banon, G.J.F. & Barrera, J. (1994) Bases da Morfologia Matemática para Anáalise de Imagens Binárias. IX Escola de Computacão, Pernambuco, Julho.
8. Serra, J. (1982) Image Analysis and Mathematical Morphology. London: Academic Press.
9. Serra, J. & Vincent, L. (1992) An overview of morphological filtering. IEEE Transactions on Circuits, Systems and Signal Processing 11: 47-108.
10. Vincent, L. (1993) Morphological grayscale reconstruction in image analysis: efficient algorithms and applications. IEEE Transactions on Image Processing 2: 176-201.
11. Meyer, F. & Beucher, S. (1990) Morphological segmentation. Journal of Visual Communication and Image Representation 1: 21-46.
12. Beucher, S. (1982) Watersheds of functions and picture segmentation. In: ICASSP 82, Proceedings of the IEEE International Conference on Acoustics, Speech and Signal Processing, Paris, May 1982, pp. 1928-1931.
13. Soille, P. & Vincent, L. (1990) Determining watersheds in digital pictures via flooding simulations. In: Visual Communications and Image Processing, (Ed) M. Kunt Vol. 1360. SPIE Bellingham, pp. 1240-250.
14. Vincent, L. & Soille, P. (1991) Watersheds in digital spaces: an efficient algorithm based on immersion simulations. IEEE Transactions on Pattern Analysis and Machine Intelligence 13:583-598.
15. Heijmans, H.J.A.M. (1999) Introduction to connected operators. In: Dougherty, E.R. & Astola, J.T. (eds), Nonlinear Filters for Image Processing. SPIE - The International Society for Optical Engineering, Bellingham pp. 207-235.
16. Chen, Y., Dougherty, E.R. & Bittner, M.L. (1997). Ratiobased decisions and the quantitative analysis of cDNA microarray images. Biomedical Optics 2: 364-374.
17. Yee Hwa Yang, Michael J. Bnckley, Sandrine Dudoit, & Speed, Terence P. (2000) Comparison of methods for image analysis on cdna microarray data. Technical Report 584, Department of Statistics, University of California at Berkeley, November.
18. Brown, C.S., Goodwin, P.C. & Sorger, P.K. (2001) Image metrics in the statistical analysis of dna microarray data. PNAS 98: 8944-8949.