Microarray analysis of selected genes in neural stem and progenitor cells

Journal of Neurochemistry

Volumn 83, Issue 6, 2002, Pages 1481-1497

  Luo, Yongquan ^a   Cai, Jingli ^a   Liu, Ying ^a   Xue, Haipeng ^a   Chrest, Francis J ^a   Wersto, Robert P ^a   Rao, Mahendra ^a  

^a NATIONAL INSTITUTE ON AGING   (United States)

Author keywords

Astrocyte; Differentiation; Glial restricted precursor; Neuroepithelial cells; Neuronal restricted precursor; Proliferation

Indexed keywords

CHEMOKINE; CHEMOKINE RECEPTOR CXCR4; CYCLIN DEPENDENT KINASE 5; CYTOKINE; EPHRIN; EPHRIN B2; FIBROBLAST GROWTH FACTOR; FIBROBLAST GROWTH FACTOR 11; HERMES ANTIGEN; NEUROPILIN; PROTEIN RHO C; RHO FACTOR; TENASCIN; UNCLASSIFIED DRUG;

ANIMAL CELL; APOPTOSIS; ARTICLE; ASTROCYTE; CELL CYCLE; CELL DIFFERENTIATION; CONTROLLED STUDY; DNA MICROARRAY; EXTRACELLULAR MATRIX; GENE EXPRESSION; GENE IDENTIFICATION; GLIA CELL; IMMUNOCYTOCHEMISTRY; IN SITU HYBRIDIZATION; NERVE CELL; NERVE CELL DIFFERENTIATION; NERVE CELL GROWTH; NERVE GROWTH; NEUROEPITHELIUM; NONHUMAN; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; STEM CELL;

ANIMALS; BLOTTING, WESTERN; CELL CYCLE; CELL DIFFERENTIATION; CELLS, CULTURED; CENTRAL NERVOUS SYSTEM; CHEMOKINES; CYTOKINES; EXTRACELLULAR MATRIX; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; IMMUNOHISTOCHEMISTRY; IN SITU HYBRIDIZATION; NEUROGLIA; NEURONS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RATS; RATS, SPRAGUE-DAWLEY; REPRODUCIBILITY OF RESULTS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; STEM CELLS;

ANIMALIA;

EID: 0036902811     PISSN: 00223042     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1471-4159.2002.01260.x     Document Type: Article

References (61)

1. Alfei L., Aita M., Caronti B., De Vita R., Margotta V., Medolago Albani L. and Valente A. M. (1999) Hyaluronate receptor CD44 is expressed by astrocytes in the adult chicken and in astrocyte cell precursors in early development of the chick spinal cord. Eur. J. Histochem. 43, 29-38.
2. Altman J. and Bayer S. A. (1984) The development of the rat spinal cord. Adv. Anat. Embryol. Cell Biol. 85, 1-164.
3. Boehme S. A., Lio F. M., Maciejewski-Lenoir D., Bacon K. B. and Conlon P. J. (2000) The chemokine fractalkine inhibits Fas-mediated cell death of brain microglia. J. Immunol. 165, 397-403.
4. Cai J., Wu Y., Mirua T., Pierce J., Lucero M. T., Albertine K. H., Spangrude G. J. and Rao M. (2002) Properties of fetal multipotent stem cells. Dev. Biol. 251, 221-240.
5. Chamak B., Dobbertin A. and Mallat M. (1995) Immunohistochemical detection of thrombospondin in microglia in the developing rat brain. Neuroscience 69, 177-187.
6. D'Sa-Eipper C. and Roth K. A. (2000) Caspase regulation of neuronal progenitor cell apoptosis. Dev. Neurosci. 22, 116-124.
7. Dhavan R. and Tsai L. H. (2001) A decade of CDK5. Nat. Rev. Mol. Cell Biol. 2, 749-759.
8. El-Nefiawy N., Abdel-Hakim K., Yamashita A. and Kanayama N. (2002) Embryonic macrophages of early rat yolk sac: Immunohistochemistry and ultrastructure with reference to endodermal cell layer. Immunol. Cell Biol. 80, 441-447.
9. Gage F. H., Ray J. and Fisher L. J. (1995) Isolation, characterization, and use of stem cells from the CNS. Annu. Rev. Neurosci. 18, 159-192.
10. Garcion E., Faissner A. and ffrench-Constant C. (2001) Knockout mice reveal a contribution of the extracellular matrix molecule tenascin-C to neural precursor proliferation and migration. Development 128, 2485-2496.
11. Geschwind D. H., Ou J., Easterday M. C., Dougherty J. D., Jackson R. L., Chen Z., Antoine H., Terskikh A., Weissman I. L., Nelson S. F. and Kornblum H. I. (2001) A genetic analysis of neural progenitor differentiation. Neuron 29, 325-339.
12. Groszer M., Erickson R., Scripture-Adams D. D., Lesche R., Trumpp A., Zack J. A., Komblum H. I., Liu X. and Wu H. (2001) Negative regulation of neural stem/progenitor cell proliferation by the Pten tumor suppressor gene in vivo. Science 294, 2186-2189.
13. Joester A. and Faissner A. (2001) The structure and function of tenascins in the nervous system. Matrix Biol. 20, 13-22.
14. Kalyani A. J. and Rao M. S. (1998) Cell lineage in the developing neural tube. Biochem. Cell Biol. 76, 1051-1068.
15. Kalyani A., Hobson K. and Rao M. S. (1997) Neuroepithelial stem cells from the embryonic spinal cord: Isolation, characterization, and clonal analysis. Dev. Biol. 186, 202-223.
16. Kalyani A. J., Piper D., Mujtaba T., Lucero M. T. and Rao M. S. (1998) Spinal cord neuronal precursors generate multiple neuronal phenotypes in culture. J. Neurosci. 18, 7856-7868.
17. Kalyani A. J., Mujtaba T. and Rao M. S. (1999) Expression of EGF receptor and FGF receptor isoforms during neuroepithelial stem cell differentiation. J. Neurobiol. 38, 207-224.
18. Kawano H., Ohyama K., Kawamura K. and Nagatsu I. (1995) Migration of dopaminergic neurons in the embryonic mesencephalon of mice. Brain Res. Dev. Brain Res. 86, 101-113.
19. Kiernan B. W., Garcion E., Ferguson J., Frost E. E., Torres E. M., Dunnett S. B., Saga Y., Aizawa S., Faissner A., Kaur R., Franklin R. J. and ffrench-Constant C. (1999) Myelination and behaviour of tenascin-C null transgenic mice. Eur. J. Neurosci. 11, 3082-3092.
20. Kim J. H., Auerbach J. M., Rodriguez-Gomez J. A., Velasco I., Gavin D., Lumelsky N., Lee S. H., Nguyen J., Sanchez-Pernaute R., Bankiewicz K. and McKay R. (2002) Dopamine neurons derived from embryonic stem cells function in an animal model of Parkinson's disease. Nature 418, 50-56.
21. Kuan C. Y., Roth K. A., Flavell R. A. and Rakic P. (2000) Mechanisms of programmed cell death in the developing brain. Trends Neurosci. 23, 291-297.
22. Kwon C. H., Zhu X., Zhang J., Knoop L. L., Tharp R., Smeyne R. J., Eberhart C. G., Burger P. C. and Baker S. J. (2001) Pten regulates neuronal soma size: A mouse model of Lhermitte-Duclos disease. Nat. Genet. 29, 404-411.
23. Lachyankar M. B., Sultana N., Schonhoff C. M., Mitra P., Poluha W., Lambert S., Quesenberry P. J., Litofsky N. S., Recht L. D., Nabi R., Miller S. J., Ohta S., Neel B. G. and Ross A. H. (2000) A role for nuclear PTEN in neuronal differentiation. J. Neurosci. 20, 1404-1413.
24. Levine E. M., Close J., Fero M., Ostrovsky A. and Reh T. A. (2000) p27 (Kip1) regulates cell cycle withdrawal of late multipotent progenitor cells in the mammalian retina. Dev. Biol. 219, 299-314.
25. Liu Y., Wu Y., Lee J. C., Xue H., Pevny L. H., Kaprielian Z. and Rao M. (2002) Oligodendrocyte and astrocyte development in rodent: An in situ and immunohistological analysis during embryonic development. Glia 40, 25-43.
26. Ma Q., Jones D., Borghesani P. R., Segal R. A., Nagasawa T., Kishimoto T., Bronson R. T. and Springer T. A. (1998) Impaired B-lymphopoiesis, myelopoiesis, and derailed cerebellar neuron migration in CXCR4- and SDF-1-deficient mice. Proc. Natl. Acad. Sci. USA 95, 9448-9453.
27. Mabie P. C., Mehler M. F. and Kessler J. A. (1999) Multiple roles of bone morphogenetic protein signaling in the regulation of cortical cell number and phenotype. J. Neurosci. 19, 7077-7088.
28. Mackarehtschian K., Hardin J. D., Moore K. A., Boast S., Goff S. P. and Lemischka I. R. (1995) Targeted disruption of the flk2/flt3 gene leads to deficiencies in primitive hematopoietic progenitors. Immunity 3, 147-161.
29. Mayer-Proschel M., Kalyani A. J., Mujtaba T. and Rao M. S. (1997) Isolation of lineage-restricted neuronal precursors from multipotent neuroepithelial stem cells. Neuron 19, 773-785.
30. Mayer-Proschel M., Liu Y., Xue H., Wu Y., Carpenter M. and Rao M. (2002) Human neural precursor cells - Culture and in vitro characterization. Clin. Neurosci. Res. in press.
31. Mehler M. F., Mabie P. C., Zhu G., Gokhan S. and Kessler J. A. (2000) Developmental changes in progenitor cell responsiveness to bone morphogenetic proteins differentially modulate progressive CNS lineage fate. Dev. Neurosci. 22, 74-85.
32. Motoyama N., Wang F., Roth K. A., Sawa H., Nakayama K., Negishi I., Senju S., Zhang Q., Fujii S. et al. (1995) Massive cell death of immature hematopoietic cells and neurons in Bcl-x-deficient mice. Science 267, 1506-1510.
33. Mujtaba T., Piper D. R., Kalyani A., Groves A. K., Lucero M. T. and Rao M. S. (1999) Lineage-restricted neural precursors can be isolated from both the mouse neural tube and cultured ES cells. Dev. Biol. 214, 113-127.
34. Noordewier M. O. and Warren P. V. (2001) Gene expression microarrays and the integration of biological knowledge. Trends Biotechnol. 19, 412-415.
35. Nomes H. O. and Das G. D. (1974) Temporal pattern of neurogenesis in spinal cord of rat. I. An autoradiographic study - Time and sites of origin and migration and settling patterns of neuroblasts. Brain Res. 73, 121-138.
36. Ohshima T., Ogawa M., Takeuchi K., Takahashi S., Kulkami A. B. and Mikoshiba K. (2002) Cyclin-dependent kinase 5/p35 contributes synergistically with Reelin/Dab1 to the positioning of facial branchiomotor and inferior olive neurons in the developing mouse hindbrain. J. Neurosci. 22, 4036-4044.
37. Ohtoshi A., Maeda T., Higashi H., Ashizawa S. and Hatakeyama M. (2000) Human p55 (CDC)/Cdc20 associates with cyclin A and is phosphorylated by the cyclin A-Cdk2 complex. Biochem. Biophys. Res. Commun. 268, 530-534.
38. Olashaw N. and Pledger W. J. (2002) Paradigms of Growth Control: Relation to cdk Activation. Sci. STKE 2002, http://stke.sciencemag.org/cgi/content/full/oc-sigtrans;/2002/134/re7.
39. Ornitz D. M. and Itoh N. (2001) Fibroblast growth factors. Genome Biol. 2, Reviews 3005.
40. Park J. K., Williams B. P., Alberta J. A. and Stiles C. D. (1999) Bipotent cortical progenitor cells process conflicting cues for neurons and glia in a hierarchical manner. J. Neurosci. 19, 10383-10389.
41. Phillips R. L., Ernst R. E., Brunk B., Ivanova N., Mahan M. A., Deanehan J. K., Moore K. A., Overton G. C. and Lemischka I. R. (2000) The genetic program of hematopoietic stem cells. Science 288, 1635-1640.
42. Pringle N., Collarini E. J., Hart I. K., Raff M. C. and Richardson W. D. (1991) Platelet-derived growth factor in central nervous system gliogenesis. Ann. N. Y. Acad. Sci. 633, 160-168.
43. Regnier C. H., Masson R., Kedinger V., Textoris J., Stoll I., Chenard M. P., Dierich A., Tomasetto C. and Rio M. C. (2002) Impaired neural tube closure, axial skeleton malformations, and tracheal ring disruption in TRAF4-deficient mice. Proc. Natl. Acad. Sci. USA 99, 5585-5590.
44. Roth K. A., Kuan C., Haydar T. F., D'Sa-Eipper C., Shindler K. S., Zheng T. S., Kuida K., Flavell R. A. and Rakic P. (2000) Epistatic and independent functions of caspase-3 and Bcl-X(L) in developmental programmed cell death. Proc. Natl. Acad. Sci. USA 97, 466-471.
45. Sanchez-Pernaute R., Studer L., Bankiewicz K. S., Major E. O. and McKay R. D. (2001) In vitro generation and transplantation of precursor-derived human dopamine neurons. J. Neurosci. Res. 65, 284-288.
46. Smith D. S. and Tsai L. H. (2002) Cdk5 behind the wheel: A role in trafficking and transport? Trends Cell Biol. 12, 28-36.
47. Sommer L. and Rao M. (2002) Neural stem cells and regulation of cell number. Prog. Neurobiol. 66, 1-18.
48. Studer L., Tabar V. and McKay R. D. (1998) Transplantation of expanded mesencephalic precursors leads to recovery in parkinsonian rats. Nat. Neurosci. 1, 290-295.
49. Takahashi T., Goto T., Miyama S., Nowakowski R. S. and Caviness V. S. Jr (1999) Sequence of neuron origin and neocortical laminar fate: Relation to cell cycle of origin in the developing murine cerebral wall. J. Neurosci. 19, 10357-10371.
50. Tanaka T. S., Jaradat S. A., Lim M. K., Kargul G. J., Wang X., Grahovac M. J., Pantano S., Sano Y., Piao Y., Nagaraja R., Doi H., Wood W. H. III, Becker K. G. and Ko M. S. (2000) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15 000 mouse developmental cDNA microarray. Proc. Natl. Acad. Sci. USA 97, 9127-9132.
51. Terskikh A. V., Easterday M. C., Li L., Hood L., Kornblum H. I., Geschwind D. H. and Weissman I. L. (2001) From hematopoiesis to neuropoiesis: Evidence of overlapping genetic programs. Proc. Natl. Acad. Sci. USA 98, 7934-7939.
52. Vaccarino F. M., Schwartz M. L., Raballo R., Nilsen J., Rhee J., Zhou M., Doetschman T., Coffin J. D., Wyland J. J. and Hung Y. T. (1999a) Changes in cerebral cortex size are governed by fibroblast growth factor during embryogenesis. Nat. Neurosci. 2, 246-253.
53. Vaccarino F. M., Schwartz M. L., Raballo R., Rhee J. and Lyn-Cook R. (1999b) Fibroblast growth factor signaling regulates growth and morphogenesis at multiple steps during brain development. Curr. Top. Dev. Biol. 46, 179-200.
54. Weiss S., Dunne C., Hewson J., Wohl C., Wheatley M., Peterson A. C. and Reynolds B. A. (1996) Multipotent CNS stem cells are present in the adult mammalian spinal cord and ventricular neuroaxis. J. Neurosci. 16, 7599-7609.
55. Weissman I. L. (2000) Stem cells: Units of development, units of regeneration, and units in evolution. Cell 100, 157-168.
56. Wiesmann A., Kim M., Georgelas A., Searles A. E., Cooper D. D., Green W. F. and Spangrude G. J. (2000) Modulation of hematopoietic stem/progenitor cell engraftment by transforming growth factor beta. Exp. Hematol. 28, 128-139.
57. Williams B. P., Park J. K., Alberta J. A., Muhlebach S. G., Hwang G. Y., Roberts T. M. and Stiles C. D. (1997) A PDGF-regulated immediate early gene response initiates neuronal differentiation in ventricular zone progenitor cells. Neuron 18, 553-562.
58. Xie M. H., Holcomb I., Deuel B., Dowd P., Huang A., Vagts A., Foster J., Liang J., Brush J., Gu Q., Hillan K., Goddard A. and Gurney A. L. (1999) FGF-19, a novel fibroblast growth factor with unique specificity for FGFR4. Cytokine 11, 729-735.
59. Yoshikawa K. (2000) Cell cycle regulators in neural stem cells and postmitotic neurons. Neurosci. Res. 37, 1-14.
60. Zindy F., Cunningham J. J., Sherr C. J., Jogal S., Smeyne R. J. and Roussel M. F. (1999) Postnatal neuronal proliferation in mice lacking Ink4d and Kipl inhibitors of cyclin-dependent kinases. Proc. Natl. Acad. Sci. USA 96, 13462-13467.
61. Zou Y. R., Kottmann A. H., Kuroda M., Taniuchi I. and Littman D. R. (1998) Function of the chemokine receptor CXCR4 in haematopoiesis and in cerebellar development. Nature 393, 595-599.