-
1
-
-
0032838471
-
Cytometric data as the basis for rigorous models of cell population dynamics
-
Srienc, F (1999) Cytometric data as the basis for rigorous models of cell population dynamics. J. Biotechnol. 71, 233-238
-
(1999)
J. Biotechnol.
, vol.71
, pp. 233-238
-
-
Srienc, F.1
-
2
-
-
0034447725
-
Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems
-
Schilling, C. H., Edwards, J. S., Letscher, D. L. and Palsson, B. O. (2001) Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems. Biotech. Bioeng., 71, 286-306
-
(2001)
Biotech. Bioeng.
, vol.71
, pp. 286-306
-
-
Schilling, C.H.1
Edwards, J.S.2
Letscher, D.L.3
Palsson, B.O.4
-
3
-
-
0035846723
-
Full-scale model of glycolysis in Saccharomyces cerevisiae
-
Hynne, F., Dano, S. and Sorensen, P. G. (2001) Full-scale model of glycolysis in Saccharomyces cerevisiae. Biophys. Chem. 94, 121-163
-
(2001)
Biophys. Chem.
, vol.94
, pp. 121-163
-
-
Hynne, F.1
Dano, S.2
Sorensen, P.G.3
-
4
-
-
0343907200
-
In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae. II. Mathematical model
-
Rizzi, M., Baltes, M., Theobald, U. and Reuss, M. (1997) In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae. II. Mathematical model. Biotech. Bioeng. 55, 592-608
-
(1997)
Biotech. Bioeng.
, vol.55
, pp. 592-608
-
-
Rizzi, M.1
Baltes, M.2
Theobald, U.3
Reuss, M.4
-
5
-
-
0001949499
-
Statistics and dynamics of microbial cell populations
-
Eakman, J. M., Fredrickson, A. G. and Tsuchiya, H. H. (1966) Statistics and dynamics of microbial cell populations, Chem. Eng. Prog. Symp. Ser. 62, 37-49
-
(1966)
Chem. Eng. Prog. Symp. Ser.
, vol.62
, pp. 37-49
-
-
Eakman, J.M.1
Fredrickson, A.G.2
Tsuchiya, H.H.3
-
6
-
-
49949137115
-
Statistics and dynamics of procaryotic cell populations
-
Fredrickson, A. G., Ramkrishna, D. and Tsuchiya, H. M. (1967) Statistics and dynamics of procaryotic cell populations. Math. Biosci. 1, 327-374
-
(1967)
Math. Biosci.
, vol.1
, pp. 327-374
-
-
Fredrickson, A.G.1
Ramkrishna, D.2
Tsuchiya, H.M.3
-
7
-
-
0028860796
-
Population balance models of autonomous microbial oscillations
-
Hjortsø, M. A. and Nielsen, J. (1995) Population balance models of autonomous microbial oscillations. J. Biotechnol. 42, 255-269
-
(1995)
J. Biotechnol.
, vol.42
, pp. 255-269
-
-
Hjortsø, M.A.1
Nielsen, J.2
-
8
-
-
0032838485
-
Numerical solution of a mass structured cell population balance model in an environment of changing substrate concentration
-
Mantzaris, N. V., Liou, J.-J., Daoutidis, P. and Srienc, F. (1999) Numerical solution of a mass structured cell population balance model in an environment of changing substrate concentration. J. Biotechnol. 71, 157-174
-
(1999)
J. Biotechnol.
, vol.71
, pp. 157-174
-
-
Mantzaris, N.V.1
Liou, J.-J.2
Daoutidis, P.3
Srienc, F.4
-
10
-
-
0019515974
-
Bacterial population dynamics in batch and continuous-flow microbial reactors
-
Nishimura, Y. and Bailey, J. E. (1981) Bacterial population dynamics in batch and continuous-flow microbial reactors. AIChE J. 27, 73-81
-
(1981)
AIChE J.
, vol.27
, pp. 73-81
-
-
Nishimura, Y.1
Bailey, J.E.2
-
11
-
-
0026964031
-
Modelling of microbial kinetics
-
Nielsen, J. and Villadsen, J. (1992) Modelling of microbial kinetics. Chem. Eng. Sci. 47, 4225-4270
-
(1992)
Chem. Eng. Sci.
, vol.47
, pp. 4225-4270
-
-
Nielsen, J.1
Villadsen, J.2
-
12
-
-
0022093898
-
Simulation of CFSTR through development of a mathematical model for anaerobic growth of Escherichia coe cell population
-
Ataai, M. M. and Shuler, M. L. (1985) Simulation of CFSTR through development of a mathematical model for anaerobic growth of Escherichia coe cell population. Biotech. Bioeng. 27, 1051-1055
-
(1985)
Biotech. Bioeng.
, vol.27
, pp. 1051-1055
-
-
Ataai, M.M.1
Shuler, M.L.2
-
13
-
-
0025485875
-
A structured, segregated model for genetically modified Escherichia coli cells and its used for prediction of plasmid stability
-
Kim, B. G. and Shuler, M. L. (1990) A structured, segregated model for genetically modified Escherichia coli cells and its used for prediction of plasmid stability. Biotech. Bioeng. 36, 581-592
-
(1990)
Biotech. Bioeng.
, vol.36
, pp. 581-592
-
-
Kim, B.G.1
Shuler, M.L.2
-
14
-
-
0001994387
-
Mathematical models of the growth of individual cells
-
Blanch, H. W., Papoutsakis, E. T. and Stephanopolous, G., eds., American Chemical Society, Washington, D.C.
-
Schuler, M. L. and Domach, M. M. (1983) Mathematical models of the growth of individual cells. In Foundations of Biochemical Engineering (Blanch, H. W., Papoutsakis, E. T. and Stephanopolous, G., eds.), pp. 93-133, American Chemical Society, Washington, D.C.
-
(1983)
Foundations of Biochemical Engineering
, pp. 93-133
-
-
Schuler, M.L.1
Domach, M.M.2
-
15
-
-
0021473901
-
A finite representation model for an asynchronous culture of E. coli
-
Domach, M. M. and Shuler, M. L. (1984) A finite representation model for an asynchronous culture of E. coli. Biotech. Bioeng., 26, 877-884
-
(1984)
Biotech. Bioeng.
, vol.26
, pp. 877-884
-
-
Domach, M.M.1
Shuler, M.L.2
-
17
-
-
0034650451
-
Effect of cellular interaction on glycolytic oscillations in yeast. A theoretical investigation
-
Wolf, J. and Heinrich, R. (2000) Effect of cellular interaction on glycolytic oscillations in yeast, A theoretical investigation. Biochem. J. 345, 321-334
-
(2000)
Biochem. J.
, vol.345
, pp. 321-334
-
-
Wolf, J.1
Heinrich, R.2
-
18
-
-
0000821240
-
Oscillatory starch degradation and fermentation in the green alga Chlamydomonas reinhardii
-
Kreuzberg, K. and Martin, W. (1984) Oscillatory starch degradation and fermentation in the green alga Chlamydomonas reinhardii. Biochim. Biophys. Acta. 799, 291-297
-
(1984)
Biochim. Biophys. Acta
, vol.799
, pp. 291-297
-
-
Kreuzberg, K.1
Martin, W.2
-
19
-
-
0023857649
-
Fructose 2,6-bisphosphate and glycolytic oscillations in skeletal muscle extracts
-
Tornheim, K. (1988) Fructose 2,6-bisphosphate and glycolytic oscillations in skeletal muscle extracts. J. Biol. Chem. 263, 2619-2624
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 2619-2624
-
-
Tornheim, K.1
-
20
-
-
0000214973
-
Properties and kinetics of reduced pyridine nucleotide fluorescence of the isolated and in vivo rat heart
-
Chance, B., Williamson, J. R., Jamieson, D. and Schoener, B. (1965) Properties and kinetics of reduced pyridine nucleotide fluorescence of the isolated and in vivo rat heart. Biochem. Z. 341, 357-377
-
(1965)
Biochem. Z.
, vol.341
, pp. 357-377
-
-
Chance, B.1
Williamson, J.R.2
Jamieson, D.3
Schoener, B.4
-
21
-
-
4244125097
-
Oscillations of nucleotides and glycolytic intermediates in aerobic suspensions of Ehrlich ascites tumor cells
-
Ibsen, K. H. and Schiller, K. W. (1967) Oscillations of nucleotides and glycolytic intermediates in aerobic suspensions of Ehrlich ascites tumor cells. Biochim. Biophys. Acta 799, 291-297
-
(1967)
Biochim. Biophys. Acta
, vol.799
, pp. 291-297
-
-
Ibsen, K.H.1
Schiller, K.W.2
-
22
-
-
0023074938
-
Why are so many biological systems periodic?
-
Rapp, P. E. (1987) Why are so many biological systems periodic? Prog. Neurobiol. 29, 261-273
-
(1987)
Prog. Neurobiol.
, vol.29
, pp. 261-273
-
-
Rapp, P.E.1
-
23
-
-
0025909052
-
Analysis of the dynamics of relaxation type oscillation in glycolysis of yeast extracts
-
Das, J. and Busse, H.-G. (1991) Analysis of the dynamics of relaxation type oscillation in glycolysis of yeast extracts. Biophys. J. 60, 363-379
-
(1991)
Biophys. J.
, vol.60
, pp. 363-379
-
-
Das, J.1
Busse, H.-G.2
-
24
-
-
0001059908
-
Phase relationship of glycolytic intermediates in yeast cells with oscillatory metabolic control
-
Betz, A. and Chance, B. (1965) Phase relationship of glycolytic intermediates in yeast cells with oscillatory metabolic control. Arch. Biochem. Biophys. 109, 585-594
-
(1965)
Arch. Biochem. Biophys.
, vol.109
, pp. 585-594
-
-
Betz, A.1
Chance, B.2
-
25
-
-
0021983604
-
Long term oscillations in glycolysis
-
Das, J. and Busse, H.-G. (1985) Long term oscillations in glycolysis. J. Biochem. (Tokyo) 97, 719-727
-
(1985)
J. Biochem. (Tokyo)
, vol.97
, pp. 719-727
-
-
Das, J.1
Busse, H.-G.2
-
26
-
-
0013770047
-
Oscillations for glycolytic intermediates in yeast cells
-
Ghosh, A. and Chance, B. (1964) Oscillations for glycolytic intermediates in yeast cells. Biochem. Biophys. Res. Commun. 16, 174-181
-
(1964)
Biochem. Biophys. Res. Commun.
, vol.16
, pp. 174-181
-
-
Ghosh, A.1
Chance, B.2
-
27
-
-
0030608156
-
Control of frequency and amplitudes is shared by all enzymes in three models for yeast glycolytic oscillations
-
Teusink, B., Bakker, B. M. and Westerhoff, H. V. (1996) Control of frequency and amplitudes is shared by all enzymes in three models for yeast glycolytic oscillations. Biochim. Biophys. Acta 1275, 204-212
-
(1996)
Biochim. Biophys. Acta
, vol.1275
, pp. 204-212
-
-
Teusink, B.1
Bakker, B.M.2
Westerhoff, H.V.3
-
28
-
-
0015084446
-
Metabolic coupling and synchronization of NADH oscillations in yeast cell populations
-
Ghosh, A. K., Chance, B. and Pye, E. K. (1971) Metabolic coupling and synchronization of NADH oscillations in yeast cell populations. Arch. Biochem. Biophys. 145, 319-331
-
(1971)
Arch. Biochem. Biophys.
, vol.145
, pp. 319-331
-
-
Ghosh, A.K.1
Chance, B.2
Pye, E.K.3
-
29
-
-
0028345016
-
Yeast cells with a specific cellular make-up and an environment that removes acetaldehyde are prone to sustained glycolytic oscillations
-
Richard, P., Diderich, J. A., Bakker, B. M., Teusink, B., van Dam, K. and Westerhoff, H. V. (1994) Yeast cells with a specific cellular make-up and an environment that removes acetaldehyde are prone to sustained glycolytic oscillations. FEBS Lett. 341, 223-226
-
(1994)
FEBS Lett.
, vol.341
, pp. 223-226
-
-
Richard, P.1
Diderich, J.A.2
Bakker, B.M.3
Teusink, B.4
Van Dam, K.5
Westerhoff, H.V.6
-
30
-
-
0027446595
-
Around the growth phase transition S. cerevisiae's make-up favors sustained oscillations of intracellular metabolites
-
Richard, P., Teusink, B., Westerhoff, H. V. and van Dam, K. (1993) Around the growth phase transition S. cerevisiae's make-up favors sustained oscillations of intracellular metabolites. FEBS Lett. 318, 80-82
-
(1993)
FEBS Lett.
, vol.318
, pp. 80-82
-
-
Richard, P.1
Teusink, B.2
Westerhoff, H.V.3
Van Dam, K.4
-
31
-
-
0030025877
-
Acetaldehyde mediates the synchronization of sustained glycolytic oscillations in populations of yeast cells
-
Richard, P., Bakker, B. M., Teusink, B., van Dam, K. and Westerhoff, H. V. (1996) Acetaldehyde mediates the synchronization of sustained glycolytic oscillations in populations of yeast cells. Eur. J. Biochem. 235, 238-241
-
(1996)
Eur. J. Biochem.
, vol.235
, pp. 238-241
-
-
Richard, P.1
Bakker, B.M.2
Teusink, B.3
Van Dam, K.4
Westerhoff, H.V.5
-
32
-
-
0015419716
-
Dissipative structures for an allosteric model. Application to glycolytic oscillations
-
Goldbeter, A. and Lefever, R. (1972) Dissipative structures for an allosteric model. Application to glycolytic oscillations. Biophys. J. 12, 1302-1315
-
(1972)
Biophys. J.
, vol.12
, pp. 1302-1315
-
-
Goldbeter, A.1
Lefever, R.2
-
33
-
-
0016829888
-
Stabilization of energy charge, generation of oscillation and multiple steady states in energy metabolism as a result of purely stoichiometric regulation
-
Selkov, E. E. (1975) Stabilization of energy charge, generation of oscillation and multiple steady states in energy metabolism as a result of purely stoichiometric regulation. Eur. J. Biochem. 50, 151-157
-
(1975)
Eur. J. Biochem.
, vol.50
, pp. 151-157
-
-
Selkov, E.E.1
-
34
-
-
0034092437
-
How yeast cells synchronize their glycolytic oscillations. A perturbation analytic treatment
-
Bier, M., Bakker, B. M. and Westerhoff, H. V. (2000) How yeast cells synchronize their glycolytic oscillations. A perturbation analytic treatment. Biophys. J. 78, 1087-1093
-
(2000)
Biophys. J.
, vol.78
, pp. 1087-1093
-
-
Bier, M.1
Bakker, B.M.2
Westerhoff, H.V.3
-
35
-
-
0030857292
-
Dynamics of two-component biochemical systems in interacting cells, Synchronization and desynchronization of oscillations and multiple steady states
-
Wolf, J. and Heinrich, R. (1997) Dynamics of two-component biochemical systems in interacting cells, Synchronization and desynchronization of oscillations and multiple steady states. Biosystems 43, 1-24
-
(1997)
Biosystems
, vol.43
, pp. 1-24
-
-
Wolf, J.1
Heinrich, R.2
-
36
-
-
0034088868
-
Transduction of intracellutar and intercellular dynamics in yeast glycolytic oscillations
-
Wolf, J., Passarge, J., Somsen, O. J. G., Snoep, J. L., Heinrich, R. and Westerhoff, H. V. (2000) Transduction of intracellular and intercellutar dynamics in yeast glycolytic oscillations, Biophys. J. 78, 1145-1153
-
(2000)
Biophys. J.
, vol.78
, pp. 1145-1153
-
-
Wolf, J.1
Passarge, J.2
Somsen, O.J.G.3
Snoep, J.L.4
Heinrich, R.5
Westerhoff, H.V.6
-
37
-
-
0026666852
-
Synchrony and mutual stimulation of yeast cells during fast glycolytic oscillations
-
Aon, M. A., Cortassa, S., Westerhoff, H. V. and van Dam, K. (1992) Synchrony and mutual stimulation of yeast cells during fast glycolytic oscillations. J. Gen. Microbiol. 138, 2219-2227
-
(1992)
J. Gen. Microbiol.
, vol.138
, pp. 2219-2227
-
-
Aon, M.A.1
Cortassa, S.2
Westerhoff, H.V.3
Van Dam, K.4
-
38
-
-
0035890846
-
Numerical solution of multivariable cell population balance models. I, Finite difference methods
-
Mantzaris, N. V., Daoutidis, P. and Srienc, F. (2001) Numerical solution of multivariable cell population balance models. I, Finite difference methods. Comp. Chem. Eng. 25, 1411-1440
-
(2001)
Comp. Chem. Eng.
, vol.25
, pp. 1411-1440
-
-
Mantzaris, N.V.1
Daoutidis, P.2
Srienc, F.3
-
39
-
-
0035890831
-
Numerical solution of multivariable cell population balance models. III, Finite element methods
-
Mantzaris, N. V., Daoutidis, P. and Srienc, F. (2001) Numerical solution of multivariable cell population balance models. III, Finite element methods. Comp. Chem. Eng. 25, 1463-1481
-
(2001)
Comp. Chem. Eng.
, vol.25
, pp. 1463-1481
-
-
Mantzaris, N.V.1
Daoutidis, P.2
Srienc, F.3
-
40
-
-
0034351958
-
Model predictive control of continuous yeast bioreactors using cell population models
-
Zhu, G.-Y., Zamamiri, A. M., Henson, M. A. and Hjortsø, M. A. (2000) Model predictive control of continuous yeast bioreactors using cell population models. Chem. Eng Sci. 55, 6155-6167
-
(2000)
Chem. Eng. Sci.
, vol.55
, pp. 6155-6167
-
-
Zhu, G.-Y.1
Zamamiri, A.M.2
Henson, M.A.3
Hjortsø, M.A.4
-
41
-
-
0028990631
-
Multistaged corpuscular models of microbial growth: Monte Carlo simulations
-
Hatzis, C., Srienc, F. and Fredrickson, A. G. (1995) Multistaged corpuscular models of microbial growth: Monte Carlo simulations. Biosystems 36, 19-35
-
(1995)
Biosystems
, vol.36
, pp. 19-35
-
-
Hatzis, C.1
Srienc, F.2
Fredrickson, A.G.3
-
42
-
-
0000152484
-
VODE, a variable coefficient ODE solver
-
Brown, P. N., Byrne, G. D. and Hindmarsh, A. C. (1989) VODE, a variable coefficient ODE solver. SIAM J. Sci. Stat. Comput. 10, 1038-1051
-
(1989)
SIAM J. Sci. Stat. Comput.
, vol.10
, pp. 1038-1051
-
-
Brown, P.N.1
Byrne, G.D.2
Hindmarsh, A.C.3
|