Rhodococcus maanshanensis sp. nov., a novel actinomycyte from soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 52, Issue 6, 2002, Pages 2121-2126

  Zhang, Jianli ^a   Zhang, Yamei ^a   Xiao, Changsong ^a   Liu, Zhiheng ^a   Goodfellow, Michael ^b  

^a INSTITUTE OF MICROBIOLOGY   (China)

^b NEWCASTLE UNIVERSITY   (United Kingdom)

Author keywords

Novel soil actinomycete; Polyphasic taxonomy; Rhodococcus maanshanensis

Indexed keywords

DNA 16S; RIBOSOME DNA;

ACTINOBACTERIA; ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CLADISTICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RHODOCOCCUS; RHODOCOCCUS ERYTHROPOLIS; RHODOCOCCUS MAANSHANENSIS; SOIL MICROFLORA; SPECIES DIFFERENCE; TAXONOMY; TYPE STRAIN;

BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; MICROSCOPY, ELECTRON, SCANNING; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RHODOCOCCUS; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY;

ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); ERYTHROPOLIS; PROKARYOTA; RHODOCOCCUS; RHODOCOCCUS ERYTHROPOLIS; RHODOCOCCUS MAANSHANENSIS; UNCULTURED ACTINOMYCETE;

EID: 0036865619     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02253-0     Document Type: Article

References (44)

1. Briglia, M., Rainey, F. A., Stackebrandt, E., Schraa, G. & Salkinoja-Salonen, M. S. (1996). Rhodococcus percolatus sp. nov., a bacterium degrading 2,4,6-trichlorophenol. Int J Syst Bacteriol 46, 23-30.
2. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
3. Colquhoun, J. A., Mexson, J., Goodfellow, M., Ward, A. C., Horikoshi, K. & Bull, A. T. (1998). Novel rhodococci and other mycolate actinomycetes from the deep sea. Antonie van Leeuwenhoek 74, 27-40.
4. Colquhoun, J. A., Zulu, J., Goodfellow, M., Horikoshi, K., Ward, A. C. & Bull, A. T. (2000). Rapid characterisation of deep-sea actinomycetes for biotechnology screening programmes. Antonie van Leeuwenhoek 77, 359-367.
5. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
6. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
7. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
8. Felsenstein, J. (1993). PHYLIP (Phylogeny Inference Package), version 3.6. Distributed by the author. Department of Genetics, University of Washington, Seattle, USA.
9. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees: a method based on mutation distances as estimated from cytochrome c sequences is of general applicability. Science 155, 279-284.
10. Goodfellow, M. (1971). Numerical taxonomy of some nocardioform bacteria. J Gen Microbiol 69, 33-80.
11. Goodfellow, M., Alderson, G. & Chun, J. (1998a). Rhodococcal systematics: problems and developments. Antonie van Leeuwenhoek 74, 3-20.
12. Goodfellow, M., Stainsby, F. M., Davenport, R., Chun, J. & Curtis, T. (1998b). Activated sludge foaming: the true extent of actinomycete diversity. Water Sci Technol 37, 511-519.
13. Goodfellow, M., Isik, K. & Yates, E. (1999). Actinomycete systematics: an unfinished synthesis. Nova Acta Leopold NF80 (312), 47-82.
14. Goodfellow, M., Chun, J., Stackebrandt, E. & Kroppenstedt, R. M. (2002). Transfer of Tsukamurella wratislaviensis Goodfellow et al. 1995 to the genus Rhodococcus as Rhodococcus wratislaviensis comb. nov. Int J Syst Evol Microbiol 52, 749-755.
15. Gordon, R. E. (1967). The taxonomy of soil bacteria. In The Ecology of Soil Bacteria, pp. 293-321. Edited by T. R. G. Gray & D. Parkinson. Liverpool: Liverpool University Press.
16. Gordon, R. E. & Mihm, J. M. (1957). A comparative study of some strains received as nocardiae. J Bacteriol 73, 15-27.
17. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54-63.
18. Helmke, E. & Weyland, H. (1984). Rhodococcus marinonascens sp. nov., an actinomycete from the sea. Int J Syst Bacteriol 34, 127-138.
19. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
20. Jahnke, K.-D. (1992). Basic computer program for evaluation of spectroscopic DNA renaturation data from Gilford System 2600 spectrophotometer on a PC/XT/AT type personal computer. J Microbiol Methods 15, 61-73.
21. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
22. Klatte, S., Kroppenstedt, R. M. & Rainey, F. A. (1994). Rhodococcus opacus sp. nov., an unusual nutritionally versatile Rhodococcus-species. Syst Appl Microbiol 17, 355-360.
23. Lechevalier, M. P. & Lechevalier, H. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
24. Lechevalier, M. P. & Lechevalier, H. A. (1980). The chemotaxonomy of actinomycetes. In Actinomycete Taxonomy, pp. 227-291. Special Publication no. 6. Arlington, VA: Society for Industrial Microbiology.
25. Lechevalier, M. P., De Bièvre, C. & Lechevalier, H. A. (1977). Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5, 249-260.
26. Lu, Z., Liu, Z., Wang, L., Zhang, Y., Qi, W. & Goodfellow, M. (2001). Saccharopolyspora flava sp. nov. and Saccharopolyspora thermophila sp. nov., novel actinomycetes from soil. Int J Syst Evol Microbiol 51, 319-325.
27. Marmur, J. & Doty, P. (1962). Determination of base composition of deoxyribonucleic acid from its denaturation temperature. J Mol Biol 5, 109-118.
28. McMinn, E. J., Alderson, G., Dodson, H. I., Goodfellow, M. & Ward, A. C. (2000). Genomic and phenomic differentiation of Rhodococcus equi and related strains. Antonie van Leeuwenhoek 78, 331-340.
29. Minnikin, D. E., Hutchinson, I. G., Caldicott, A. B. & Goodfellow, M. (1980). Thin-layer chromatography of methanolysates of mycolic acid-containing bacteria. J Chromatogr 188, 221-223.
30. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
31. Mordarska, H., Mordarski, M. & Goodfellow, M. (1972). Chemotaxonomic characters and classification of some nocardioform bacteria. J Gen Microbiol 71, 77-86.
32. Rainey, F. A., Burghardt, J., Kroppenstedt, R. M., Klatte, S. & Stackebrandt, E. (1995). Phylogenetic analysis of the genera Rhodococcus and Nocardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species. Microbiology 141, 523-528.
33. Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R. M. & Stackebrandt, E. (1996). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsiaceae fam. nov. Int J Syst Bacteriol 46, 1088-1092.
34. Saito, H. & Miura, K.-I. (1963). Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72, 619-629.
35. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
36. Society for American Bacteriologists (1957). Manual of Microbiological Methods. New York: McGraw-Hill.
37. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
38. Tsukamura, M. (1966). Adansonian classification of mycobacteria. J Gen Microbiol 45, 253-273.
39. Uchida, K. & Aida, K. (1977). Acyl type of bacterial cell wall: its simple identification by colorimetric method. J Gen Appl Microbial 23, 249-260.
40. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
41. Williams, S. T., Goodfellow, M., Alderson, G., Wellington, E. M. H., Sneath, P. H. A. & Sackin, M. J. (1983). Numerical classification of Streptomyces and related genera. J Gen Microbiol 129, 1743-1813.
42. Wu, C., Lu, X., Qin, M., Wang, Y. & Ruan, J. (1989). Analysis of menaquinone compound in microbial cells by HPLC. Microbiology (English translation of Mikrobiologiya) 16, 176-178.
43. Yoon, J.-H., Cho, Y.-G., Kang, S.-S., Kim, S. B., Lee, S. T. & Park, Y.-H. (2000a). Rhodococcus koreensis sp. nov., a 2,4-dinitrophenol-degrading bacterium. Int J Syst Evol Microbiol 50, 1193-1201.
44. Yoon, J.-H., Kang, S.-S., Cho, Y.-G., Lee, S. T., Kho, Y. H., Kim, C.-J. & Park, Y.-H. (2000b). Rhodococcus pyridinivorans sp. nov., a pyridine-degrading bacterium. Int J Syst Evol Microbiol 50,