Biochemical identification of A-minor motifs within RNA tertiary structure by interference analysis

Biochemical Society Transactions

Volumn 30, Issue 6, 2002, Pages 1126-1131

  Strobel, S A ^a,b  

^a YALE UNIVERSITY   (United States)

^b CREIGHTON UNIVERSITY   (United States)

Author keywords

Group I intron; Nucleotide analogue interference mapping (NAIM); Ribozyme

Indexed keywords

3 DEAZAADENOSINE; ADENOSINE; DEOXYADENOSINE;

CATALYSIS; CHEMICAL ANALYSIS; CHEMICAL MODIFICATION; CONFERENCE PAPER; HYDROGEN BOND; INTRON; PRIORITY JOURNAL; PROTEIN FAMILY; PROTEIN MOTIF; PROTEIN PROTEIN INTERACTION; PROTEIN TERTIARY STRUCTURE; RIBOSOME SUBUNIT; RNA ANALYSIS; RNA RNA HYBRIDIZATION;

BINDING SITES; EXONS; INTRONS; MODELS, CHEMICAL; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; RNA; RNA, CATALYTIC;

EID: 0036865299     PISSN: 03005127     EISSN: None     Source Type: Journal    
DOI: 10.1042/BST0301126     Document Type: Conference Paper

References (34)

1. Nissen, P., Ippolito, J. A., Ban, N., Moore, P. B. and Steitz, T. A. (2001) Proc. Natl. Acad. Sci. U.S.A. 98, 4899-4903
2. Gutell, R. R., Weiser, B., Woese, C. R. and Noller, H. F. (1985) Prog. Nucleic Acid Res. Mol. Biol. 32, 155-216
3. Gutell, R. R., Cannone, J. J., Shang, Z., Du, Y. and Serra, M. J. (2000) J. Mol. Biol. 304, 335-354
4. Ban, N., Nissen, P., Hansen, J., Moore, P. and Steitz, T. (2000) Science 289, 905-920
5. Wimberly, B. T., Brodersen, D. E., Clemons, Jr, W. M., Morgan-Warren, R. J., Carter, A. P., Vonrhein, C., Hartsch, T. and Ramakrishnan, V. (2000) Nature (London) 407, 327-339
6. Nissen, P., Hansen, J., Ban, N., Moore, P. and Steitz, T. (2000) Science 289, 920-930
7. Ogle, J. M., Brodersen, D. E., Clemons, Jr, W. M., Tarry, M. J., Carter, A. P. and Ramakrishnan, V. (2001) Science 292, 897-902
8. Doherty, E. A., Batey, R. T., Masquida, B. and Doudna, J. A. (2001) Nat. Struct. Biol. 8, 339-343
9. Cate, J. H., Gooding, A. R., Podell, E., Zhou, K., Golden, B. L., Kundrot, C. E., Cech, T. R. and Doudna, J. A. (1996) Science 273, 1678-1685
10. Ferre-D'Amare, A. R., Zhou, K. and Doudna, J. A. (1998) Nature (London) 395, 567-574
11. Rupert, P. B. and Ferre-D'Amare, A. R. (2001) Nature (London) 410, 780-786
12. Yusupov, M. M., Yusupova, G. Z., Baucom, A., Lieberman, K., Earnest, T. N., Cate, J. H. and Noller, H. F. (2001) Science 292, 883-896
13. Stern, S., Moazed, D. and Noller, H. F. (1988) Methods Enzymol. 164, 481-489
14. Conrad, F., Hanne, A., Gaur, R. K. and Krupp, G. (1995) Nucleic Acids Res. 23, 1845-1853
15. Strobel, S. A., Ortoleva-Donnelly, L., Ryder, S. P., Cate, J. H. and Moncoeur, E. (1998) Nat. Struct. Biol. 5, 60-66
16. Lawley, P. and Brookes, P. (1963) Biochem. J. 89, 127-138
17. Soukup, J. K., Minakawa, N., Matsuda, A. and Strobel, S. A. (2002) Biochemistry 41, 10426-10438
18. Gish, G. and Eckstein, F. (1988) Science 240, 1520-1522
19. Strobel, S. A. and Shetty, K. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 2903-2908
20. Cech, T. R., Zaug, A. J. and Grabowski, P. J. (1981) Cell 27, 487-496
21. Reinhold-Hurek, B. and Shub, D. A. (1992) Nature (London) 357, 173-176
22. Golden, B. L., Gooding, A. R., Podell, E. R. and Cech, T. R. (1998) Science 282, 259-264
23. Strauss-Soukup, J. and Strobel, S. A. (2000) J. Mol. Biol. 302, 339-358
24. Ortoleva-Donnelly, L., Szewczak, A. A., Gutell, R. R. and Strobel, S. A. (1998) RNA 4, 498-519
25. Pyle, A. M. and Cech, T. R. (1991) Nature (London) 350, 628-631
26. Bevilacqua, P. C. and Turner, D. H. (1991) Biochemistry 30, 10632-10640
27. Strobel, S. A. and Cech, T. R. (1993) Biochemistry 32, 13593-13604
28. Ortoleva-Donnelly, L., Kronman, M. and Strobel, S. A. (1998) Biochemistry 37, 12933-12942
29. Herschlag, D., Eckstein, F. and Cech, T. R. (1993) Biochemistry 32, 8312-8321
30. Strobel, S. A. and Cech, T. R. (1995) Science 267, 675-679
31. Strobel, S. A. and Ortoleva-Donnelly, L. (1999) Chem. Biol. 6, 153-156
32. Tanner, M. A. and Cech, T. R. (1996) RNA 2, 74-83
33. Costa, M. and Michel, F. (1995) EMBO J. 14, 1276-1285
34. Pyle, A. M., Murphy, F. L. and Cech, T. R. (1992) Nature (London) 358, 123-128