Genomic fingerprinting and genotyping of Helicobacter pylori strains from patients with duodenal ulcer or gastric cancer from different geographic regions

Digestive Diseases and Sciences

Volumn 47, Issue 11, 2002, Pages 2512-2518

  Li, Li ^a   Graham, David Y ^a   Gutierrez, Oscar ^b   Kim, Jong G ^c   Genta, Robert M ^a   Mt El Zimaity, Hala ^a   Go, Mae F ^a  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

^b UNIVERSIDAD NACIONAL DE COLOMBIA   (Colombia)

^c Korea University College of Medicine   (South Korea)

Author keywords

cagA; Duodenal ulcer; Gastric cancer; Helicobacter pylori; iceA; REP PCR; vacA

Indexed keywords

BACTERIAL PROTEIN; CAGA PROTEIN; ICEA PROTEIN; UNCLASSIFIED DRUG; VACUOLATING TOXIN; VIRULENCE FACTOR;

ADULT; AGED; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; CLUSTER ANALYSIS; DNA FINGERPRINTING; DUODENUM ULCER; FEMALE; GENE AMPLIFICATION; GENOTYPE; GEOGRAPHY; HELICOBACTER PYLORI; HUMAN; MAJOR CLINICAL STUDY; MALE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; STOMACH CANCER;

ANTIGENS, BACTERIAL; BACTERIAL PROTEINS; DEMOGRAPHY; DNA FINGERPRINTING; DNA, BACTERIAL; DUODENAL ULCER; GENOTYPE; HELICOBACTER INFECTIONS; HELICOBACTER PYLORI; HUMANS; POLYMERASE CHAIN REACTION; REPETITIVE SEQUENCES, NUCLEIC ACID; STOMACH NEOPLASMS; VIRULENCE;

EID: 0036845718     PISSN: 01632116     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1020564126960     Document Type: Article

References (27)

1. Dunn BE, Cohen H, Blaser MJ: Helicobacter pylori. Clin Microbiol Rev 10:720-741, 1997
2. Blaser MJ: Ecology of Helicobacter pylori in the human stomach. J Clin Invest 100:759-762, 1997
3. Hansson LE, Nyren O, Hsing AW, Bergstrom R, Josefsson S, Chow WH, Fraumeni JF Jr, Adami HO: The risk of stomach cancer in patients with gastric or duodenal ulcer disease. N Engl J Med 335:242-249, 1996
4. Hole DJ, Quigley EM, Gillis CR, Watkinson G: Peptic ulcer and cancer: An examination of the relationship between chronic peptic ulcer and gastric carcinoma. Scand J Gastroenterol 22:17-23, 1987
5. Parsonnet J, Friedman GD, Vandersteen DP, Chang Y, Vogelman JH, Orentreich N, Sibley RK: Helicobacter pylori infection and the risk of gastric carcinoma. N Engl J Med 325:1127-1131, 1991
6. Sonnenberg A, Wasserman IH: Associations of peptic ulcer and gastric cancer with other diseases in US veterans. Am J Public Health 85:1252-1255, 1995
7. Yoshimura HH, Evans DG, Graham DY: DNA-DNA hybridization demonstrates apparent genetic differences between Helicobacter pylori from patients with duodenal ulcer and asymptomatic gastritis. Dig Dis Sci 38:1128-1131, 1993
8. Akopyanz N, Bukanov NO, Westblom TU: DNA diversity among clinical isolates of Helicobacter pylori detected by PCR-based RAPD fingerprinting. Nucleic Acids Res 20:5137-5142, 1992
9. Owen RJ, Bickley J, Costas M, Morgan DR: Genomic variation in Helicobacter pylori: Application for identification of strains. Scand J Gastroenterol 181:43-50, 1991
10. Clayton CL, Kleanthous H, Morgan DD, Puckey L, Tabaqchali S: Rapid fingerprinting of Helicobacter pylori by polymerase chain reaction and restriction fragment length polymorphism analysis. J Clin Microbiol 31:1420-1425, 1993
11. Taylor NS, Fox JG, Akopyants NS, Berg DE, Thompson N, Benjamin S, Yan LL, Fontham E, Janney F, Hunter FM, Correa P: Long-term colonization with single and multiple strains of Helicobacter pylori assessed by DNA fingerprinting. J Clin Microbiol 33:918-923, 1995
12. Go MF, Chan KY, Versalovic J, Koeuth T, Graham DY, Lupski JR: Cluster analysis of Helicobacter pylori genomic DNA fingerprints suggests gastroduodenal disease-specific associations. Scand J Gastroenterol 30:640-646, 1995
13. van der Ende A, Rauws EA, Feller M, Mulder CJ, Tytgat GN, Dankert J: Heterogeneous Helicobacter pylori isolates from members of a family with a history of peptic ulcer disease. Gastroenterology 111:638-647, 1996
14. Versalovic J, Koeuth T, Lupski JR: Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res 19:6823-6831, 1991
15. Li L, Kelly LK, Ayub K, Graham DY, Go MF: Genotypes of Helicobacter pylori obtained from gastric ulcer patients taking or not taking NSAIDs. Am J Gastroenterol 94:1502-1507, 1999
16. Covacci A, Censini S, Bugnoli M, Petracca R, Burroni D, Macchia G, Massone A, Papini E, Xiang Z, Figura N, Pappuoli R: Molecular characterization of the 128-kDa immunodominant antigen of Helicobacter pylori associated with cytotoxicity and duodenal ulcer. Proc Natl Acad Sci USA 90:5791-5795, 1993
17. van Doorn NE, Namavar F, Kusters JG, van Rees EP, Kuipers EJ, de Graaff J: Genomic DNA fingerprinting of clinical isolates of Helicobacter pylori by REP-PCR and restriction fragment end-labelling. FEMS Microbiol Lett 160:145-150, 1998
18. Go MF, Kapur V, Graham DY, Musser JM: Population genetic analysis of Helicobacter pylori by multilocus enzyme electrophoresis: Extensive allelic diversity and recombinational population structure. J Bacteriol 178:3934-3938, 1996
19. Suerbaum S, Smith JM, Bapumia K, Morelli G, Smith NH, Kunstmann E, Dyrek I, Achtman M: Free recombination within Helicobacter pylori. Proc Natl Acad Sci USA 95:12619-12624, 1998
20. Achtman M, Azuma T, Berg DE, Ito Y, Morelli G, Pan ZJ, Suerbaum S, Thompson SA, van der Ende A, van Doorn LJ: Recombination and clonal groupings within Helicobacter pylori from different geographical regions. Mol Microbiol 32:459-470, 1999
21. Go MF, Graham DY: Presence of the cagA gene in the majority of Helicobacter pylori strains is independent of whether the individual has duodenal ulcer or asymptomatic gastritis. Helicobacter 1:107-111, 1996
22. Yamaoka Y, Kodama T, Gutierrez O, Kim JG, Kashima K, Graham DY: Relationship between Helicobacter pylori iceA, cagA, and vacA status and clinical outcome: Studies in four different countries. J Clin Microbiol 37:2274-2279, 1999
23. Go MF, Cissell L, Graham DY: Failure to confirm association of vacA gene mosaicism with duodenal ulcer disease. Scand J Gastroenterol 33:132-136, 1998
24. Miehlke S, Kibler K, Kim JG, Figura N, Small SM, Graham DY, Go MF: Allelic variation in the cagA gene of Helicobacter pylori obtained from Korea compared to the United States. Am J Gastroenterol 91:1322-1325, 1996
25. van Doorn LJ, Figueiredo C, Megraud F, Pena S, Midolo P, Queiroz DM, Carneiro F, Vanderborght B, Pegado MD, Sanna R, De Boer W, Schneeberger PM, Correa P, Ng EK, Atherton J, Blaser MJ, Quint WG: Geographic distribution of vacA allelic types of Helicobacter pylori. Gastroenterology 116:823-830, 1999
26. van Doorn LJ, Figueiredo C, Sanna R, Plaisier A, Schneeberger P, De Boer W, Quint W: Clinical relevance of the cagA, vacA, and iceA status of Helicobacter pylori. Gastroenterology 115:58-66, 1998
27. Covacci A, Telford JL, Del Giudice G, Parsonnet J, Rappuoli R: Helicobacter pylori virulence and genetic geography. Science 284:1328-1333, 1999