메뉴 건너뛰기




Volumn 51, Issue 11, 2002, Pages 949-957

Heterogeneity within the gram-positive anaerobic cocci demonstrated by analysis of 16S-23S intergenic ribosomal RNA polymorphisms

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; RIBOSOME DNA; RNA 16S; RNA 23S; SPACER DNA;

EID: 0036841453     PISSN: 00222615     EISSN: None     Source Type: Journal    
DOI: 10.1099/0022-1317-51-11-949     Document Type: Article
Times cited : (24)

References (36)
  • 1
    • 0003107191 scopus 로고    scopus 로고
    • Peptostrepotococcus, Propionibacterium, Lactobacillus, Actinomyces and other non-sporing anaerobic gram-positive bacteria
    • Murray PR, Baron EJ, Pfaller MA, Tenover FC, Yolken (eds). Washington, DC, ASM Press.
    • Rodloff AC, Hillier SL, Moncla BJ. Peptostrepotococcus, Propionibacterium, Lactobacillus, Actinomyces and other non-sporing anaerobic gram-positive bacteria. In: Murray PR, Baron EJ, Pfaller MA, Tenover FC, Yolken (eds) Manual of Clinical Microbiology, 7th Edn. Washington, DC, ASM Press. 1999: 672-689.
    • (1999) Manual of Clinical Microbiology, 7th Edn. , pp. 672-689
    • Rodloff, A.C.1    Hillier, S.L.2    Moncla, B.J.3
  • 2
    • 0023924461 scopus 로고
    • Recovery of anaerobic bacteria from clinical specimens in 12 years at two military hospitals
    • Brook I. Recovery of anaerobic bacteria from clinical specimens in 12 years at two military hospitals. J Clin Microbiol 1988; 26: 1181-1188.
    • (1988) J Clin Microbiol , vol.26 , pp. 1181-1188
    • Brook, I.1
  • 3
    • 0017576615 scopus 로고
    • Numbers and types of anaerobic bacteria isolated from clinical specimens since 1960
    • Holland JW, Hill EO, Altemeier WA. Numbers and types of anaerobic bacteria isolated from clinical specimens since 1960. J Clin Microbiol 1977; 5: 20-25.
    • (1977) J Clin Microbiol , vol.5 , pp. 20-25
    • Holland, J.W.1    Hill, E.O.2    Altemeier, W.A.3
  • 4
    • 0028085389 scopus 로고
    • The clinical importance of gram-positive anaerobic cocci isolated at St Bartholomew's Hospital, London, in 1987
    • Murdoch DA, Mitchelmore IJ, Tabaqchali S. The clinical importance of gram-positive anaerobic cocci isolated at St Bartholomew's Hospital, London, in 1987. J Med Microbiol 1994; 41: 36-44.
    • (1994) J Med Microbiol , vol.41 , pp. 36-44
    • Murdoch, D.A.1    Mitchelmore, I.J.2    Tabaqchali, S.3
  • 6
    • 0031963208 scopus 로고    scopus 로고
    • Gram-positive anaerobic cocci
    • Murdoch DA. Gram-positive anaerobic cocci. Clin Microbiol Rev 1998; 11: 81-120.
    • (1998) Clin Microbiol Rev , vol.11 , pp. 81-120
    • Murdoch, D.A.1
  • 7
    • 0028126829 scopus 로고
    • The phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations
    • Collins MD, Lawson PA, Willems A et al. The phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations. Int J Syst Bacteriol 1994; 44: 812-826.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 812-826
    • Collins, M.D.1    Lawson, P.A.2    Willems, A.3
  • 8
    • 0030806180 scopus 로고    scopus 로고
    • Taxonomic update and clinical significance of species within the genus Peptostreptococcus
    • Conrads G, Soffner J, Pelz K, Mutters R. Taxonomic update and clinical significance of species within the genus Peptostreptococcus. Clin Infect Dis 1997; 25 Suppl 2: S94-S97.
    • (1997) Clin Infect Dis , vol.25 , Issue.SUPPL. 2
    • Conrads, G.1    Soffner, J.2    Pelz, K.3    Mutters, R.4
  • 9
    • 0027955226 scopus 로고
    • Determination of 16S ribosomal RNA sequences of all members of the genus Peptostreptococcus and their phylogenetic position
    • Li N, Hashimoto Y, Ezaki T. Determination of 16S ribosomal RNA sequences of all members of the genus Peptostreptococcus and their phylogenetic position. FEMS Microbiol Lett 1994; 116: 1-6.
    • (1994) FEMS Microbiol Lett , vol.116 , pp. 1-6
    • Li, N.1    Hashimoto, Y.2    Ezaki, T.3
  • 10
    • 0029166395 scopus 로고
    • A numerical taxonomic study of the gram-positive anaerobic cocci
    • Murdoch, DA, Magee JT. A numerical taxonomic study of the gram-positive anaerobic cocci. J Med Microbiol 1995; 43: 148-155.
    • (1995) J Med Microbiol , vol.43 , pp. 148-155
    • Murdoch, D.A.1    Magee, J.T.2
  • 11
    • 0033852041 scopus 로고    scopus 로고
    • Proposal to restrict the genus Peptostreptococcus (Kluyver and van Niel 1936) to Peptostreptococcus anaerobius
    • Murdoch DA, Shah HN, Gharbia SE, Rajendram D. Proposal to restrict the genus Peptostreptococcus (Kluyver and van Niel 1936) to Peptostreptococcus anaerobius. Anaerobe 2000; 6: 257-260.
    • (2000) Anaerobe , vol.6 , pp. 257-260
    • Murdoch, D.A.1    Shah, H.N.2    Gharbia, S.E.3    Rajendram, D.4
  • 12
    • 0030749650 scopus 로고    scopus 로고
    • Description of three new species of the genus Peptostreptococcus from human clinical specimens: Peptostreptococcus harei sp. nov., Peptostreptococcus ivorii sp. nov., and Peptostreptococcus octavius sp. nov
    • Murdoch DA, Collins MD, Willems A, Hardie JM, Young KA, Magee JT. Description of three new species of the genus Peptostreptococcus from human clinical specimens: Peptostreptococcus harei sp. nov., Peptostreptococcus ivorii sp. nov., and Peptostreptococcus octavius sp. nov. Int J Sys Bacteriol 1997; 47: 781-787.
    • (1997) Int J Sys Bacteriol , vol.47 , pp. 781-787
    • Murdoch, D.A.1    Collins, M.D.2    Willems, A.3    Hardie, J.M.4    Young, K.A.5    Magee, J.T.6
  • 13
    • 0033390409 scopus 로고    scopus 로고
    • Reclassification of Peptostreptococcus magnus (Prevot 1933) Holdemann and Moore 1972 as Finegoldia magna comb. nov. and Peptostreptococcus micros (Prevot 1933) Smith 1957 as Micromonas micros comb. nov.
    • Murdoch DA, Shah HN. Reclassification of Peptostreptococcus magnus (Prevot 1933) Holdemann and Moore 1972 as Finegoldia magna comb. nov. and Peptostreptococcus micros (Prevot 1933) Smith 1957 as Micromonas micros comb. nov. Anaerobe 1999; 5: 555-559.
    • (1999) Anaerobe , vol.5 , pp. 555-559
    • Murdoch, D.A.1    Shah, H.N.2
  • 14
    • 0034926907 scopus 로고    scopus 로고
    • Proposal of the genera Anaerococcus gen. nov., Peptoniphilus gen. nov. and Gallicola gen. nov. for members of the genus Peptostreptococcus
    • Ezaki T, Kawamura Y, Li N, Li Z-Y, Zhao L, Shu S. Proposal of the genera Anaerococcus gen. nov., Peptoniphilus gen. nov. and Gallicola gen. nov. for members of the genus Peptostreptococcus. Int J Syst Evol Microbiol 2001; 51: 1521-1528.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 1521-1528
    • Ezaki, T.1    Kawamura, Y.2    Li, N.3    Li, Z.-Y.4    Zhao, L.5    Shu, S.6
  • 15
    • 0026207421 scopus 로고
    • The 16S/23S ribosomal spacer region as a target for DNA probes to identify eubacteria
    • Barry T, Colleran G, Glennon M, Duncan LK, Gannon F. The 16S/23S ribosomal spacer region as a target for DNA probes to identify eubacteria. PCR Methods Appl 1991; 1: 51-56.
    • (1991) PCR Methods Appl , vol.1 , pp. 51-56
    • Barry, T.1    Colleran, G.2    Glennon, M.3    Duncan, L.K.4    Gannon, F.5
  • 16
    • 0027461618 scopus 로고
    • Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms
    • Jensen MA, Webster JA, Strauss N. Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms. Appl Environ Microbiol 1993; 59: 945-952.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 945-952
    • Jensen, M.A.1    Webster, J.A.2    Strauss, N.3
  • 17
    • 0028847554 scopus 로고
    • A universal approach to bacterial molecular epidemiology by polymerase chain reaction ribotyping
    • Kostman JR, Alden MB, Mair M, Edlind TE, Lipuma JJ, Stull TL. A universal approach to bacterial molecular epidemiology by polymerase chain reaction ribotyping. J Infect Dis 1995; 171: 204-208.
    • (1995) J Infect Dis , vol.171 , pp. 204-208
    • Kostman, J.R.1    Alden, M.B.2    Mair, M.3    Edlind, T.E.4    Lipuma, J.J.5    Stull, T.L.6
  • 18
    • 0030949841 scopus 로고    scopus 로고
    • Species identification of enterococci via intergenic ribosomal PCR
    • Tyrrell GJ, Bethune RN, Willey B, Low DE. Species identification of enterococci via intergenic ribosomal PCR. J Clin Microbiol 1997; 35: 1054-1060.
    • (1997) J Clin Microbiol , vol.35 , pp. 1054-1060
    • Tyrrell, G.J.1    Bethune, R.N.2    Willey, B.3    Low, D.E.4
  • 19
    • 0025816023 scopus 로고
    • Molecular fingerprinting of isolates of the genus Peptostreptococcus using rRNA genes from Escherichia coli and P. anaerobius
    • Ng L-K, Dillon J-A. Molecular fingerprinting of isolates of the genus Peptostreptococcus using rRNA genes from Escherichia coli and P. anaerobius. J Gen Microbiol 1991; 137: 1323-1331.
    • (1991) J Gen Microbiol , vol.137 , pp. 1323-1331
    • Ng, L.-K.1    Dillon, J.-A.2
  • 21
    • 0017055267 scopus 로고
    • A simple and sensitive technique for determining the fermentation reactions of non-sporing anaerobes
    • Phillips KD. A simple and sensitive technique for determining the fermentation reactions of non-sporing anaerobes. J Appl Bacteriol 1976; 41: 325-328.
    • (1976) J Appl Bacteriol , vol.41 , pp. 325-328
    • Phillips, K.D.1
  • 23
    • 0026478536 scopus 로고
    • A one-step microbial DNA extraction method using "Chelex-100" suitable for gene amplification
    • de Lamballerie X, Zandotti C, Vignoli C, Bollet C de Micco P. A one-step microbial DNA extraction method using "Chelex-100" suitable for gene amplification. Res Microbiol 1992; 143: 785-790.
    • (1992) Res Microbiol , vol.143 , pp. 785-790
    • De Lamballerie, X.1    Zandotti, C.2    Vignoli, C.3    Bollet, C.4    De Micco, P.5
  • 24
    • 0031937375 scopus 로고    scopus 로고
    • Design and evaluation of useful bacterial-specific PCR primers that amplify genes coding for bacterial 16S rRNA genes
    • Marchesi JR, Sato T, Weightman AJ et al. Design and evaluation of useful bacterial-specific PCR primers that amplify genes coding for bacterial 16S rRNA genes. Appl Environ Microbiol 1998; 64: 795-799.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 795-799
    • Marchesi, J.R.1    Sato, T.2    Weightman, A.J.3
  • 26
    • 0023989064 scopus 로고
    • Improved tools for biological sequence analysis
    • Pearson WR, Lipman DJ. Improved tools for biological sequence analysis. PNAS 1988; 85: 2444-2448.
    • (1988) PNAS , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 27
    • 0025272240 scopus 로고
    • Rapid and sensitive sequence comparison with FASTP and FASTA
    • Pearson WR. Rapid and sensitive sequence comparison with FASTP and FASTA. Methods Enzymol 1990; 183: 63-98.
    • (1990) Methods Enzymol , vol.183 , pp. 63-98
    • Pearson, W.R.1
  • 29
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994; 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 30
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro HN (ed). New York, Academic Press
    • Jukes TH, Cantor CR. Evolution of protein molecules. In: Munro HN (ed) Mammalian Protein Metabolism, vol 3. New York, Academic Press. 1969: 21-132.
    • (1969) Mammalian Protein Metabolism , vol.3 , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 31
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 32
    • 0028509254 scopus 로고
    • TREECON for Windows a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
    • Van de Peer Y, De Wachter R. TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 1994; 10: 569-570.
    • (1994) Comput Appl Biosci , vol.10 , pp. 569-570
    • Van de Peer, Y.1    De Wachter, R.2
  • 33
    • 0033870886 scopus 로고    scopus 로고
    • Evaluation of a phenotypic scheme for the identification of 'butyrate-producing' Peptostreptococcus species
    • Wilson MJ, Hall V, Brazier J, Lewis MAO. Evaluation of a phenotypic scheme for the identification of 'butyrate-producing' Peptostreptococcus species. J Med Microbiol 2000; 49: 747-751.
    • (2000) J Med Microbiol , vol.49 , pp. 747-751
    • Wilson, M.J.1    Hall, V.2    Brazier, J.3    Lewis, M.A.O.4
  • 34
    • 0026631487 scopus 로고
    • Molecular epidemiology of Pseudomonas cepacia determined by polymerase chain reaction ribotyping
    • Kostman JR, Edlind TD, Lipuma JJ, Stull TL. Molecular epidemiology of Pseudomonas cepacia determined by polymerase chain reaction ribotyping. J Clin Microbiol 1992; 30: 2084-2087.
    • (1992) J Clin Microbiol , vol.30 , pp. 2084-2087
    • Kostman, J.R.1    Edlind, T.D.2    Lipuma, J.J.3    Stull, T.L.4
  • 35
    • 0029013127 scopus 로고
    • Heterogeneity among 16S-23S ribosomal RNA intergenic spacers of species within the 'Streptococcus milleri' group
    • Whiley RA, Duke B, Hardie JM, Hall LMC. Heterogeneity among 16S-23S ribosomal RNA intergenic spacers of species within the 'Streptococcus milleri' group. Microbiology 1995; 141: 1461-1467.
    • (1995) Microbiology , vol.141 , pp. 1461-1467
    • Whiley, R.A.1    Duke, B.2    Hardie, J.M.3    Hall, L.M.C.4
  • 36
    • 0025891210 scopus 로고
    • The laboratory identification of gram-positive anaerobic cocci
    • Murdoch DA, Mitchelmore IJ. The laboratory identification of gram-positive anaerobic cocci. J Med Microbiol 1991; 34: 295-308.
    • (1991) J Med Microbiol , vol.34 , pp. 295-308
    • Murdoch, D.A.1    Mitchelmore, I.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.