Checkerboard DNA-DNA hybridisation technology focused on the analysis of Gram-positive cariogenic bacteria

Journal of Microbiological Methods

Volumn 51, Issue 3, 2002, Pages 301-311

  Wall Manning, G M ^a   Sissons, C H ^a   Anderson, S A ^a   Lee, M ^b  

^a UNIVERSITY OF OTAGO   (New Zealand)

^b School and Community Dental Service   (New Zealand)

Author keywords

Checkerboard DNA hybridisation; Dental caries; Dental plaque; Gram positive species

Indexed keywords

BACTERIAL DNA;

ACTINOMYCES; ANTIBODY DETECTION; ARTICLE; BIFIDOBACTERIUM; CANDIDA ALBICANS; CLINICAL ARTICLE; CONTROLLED STUDY; CORYNEBACTERIUM; DENTAL CARIES; DNA DNA HYBRIDIZATION; DNA EXTRACTION; EUBACTERIUM; GEMELLA; GRAM NEGATIVE BACTERIUM; GRAM POSITIVE BACTERIUM; HUMAN; LACTOBACILLUS; NONHUMAN; PRESCHOOL CHILD; PRIORITY JOURNAL; STREPTOCOCCUS; TECHNIQUE;

BUFFERS; CANDIDA ALBICANS; CHILD; CHILD, PRESCHOOL; DENTAL CARIES; DENTAL PLAQUE; DIGOXIGENIN; DNA PROBES; DNA, BACTERIAL; DNA, FUNGAL; GRAM-POSITIVE BACTERIA; HUMANS; NUCLEIC ACID HYBRIDIZATION; SENSITIVITY AND SPECIFICITY;

CANDIDA; CANDIDA ALBICANS; MICROBIOTA; NEGIBACTERIA; POSIBACTERIA;

EID: 0036829281     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-7012(02)00106-9     Document Type: Article

References (31)

1. Ausubel, F., Brent, R., Kingston, R., Moore, D., Seidman, J., Smith, J., Struhl, K., 1990. Current Protocols in Molecular Biology. Greene Publishing Associates and Wiley-Interscience, New York.
2. Babaahmady K.G., Challacombe S.J., Marsh P.D., Newman H.N. Ecological study of Streptococcus mutans, Streptococcus sobrinus and Lactobacillus spp. at sub-sites from approximal dental plaque from children. Caries Res. 32:1998;51-58.
3. Beighton D., Brailsford S.R. Plaque microbiology of root caries. Newman H.N., Wilson M. Dental Plaque Revisited. 1999;295-312 Bioline, Cardiff.
4. Beighton D., Adamson A., Rugg-Gunn A. Associations between dietary intake, dental caries experience and salivary bacterial levels in 12-year-old English schoolchildren. Arch. Oral Biol. 41:1996;271-280.
5. Bowden G.H. Which bacteria are cariogenic in humans? Johnson N.W. Risk Markers for Oral Diseases. Dental Caries. vol. 1:1991;266-286 Cambridge Univ. Press, Cambridge.
6. Bowden G.H. Does assessment of microbial composition of plaque/saliva allow for diagnosis of disease activity of individuals? Community Dent. Oral Epidemiol. 25:1997;76-81.
7. Church G.M., Gilbert W. Genomic sequencing. Proc. Natl. Acad. Sci. U. S. A. 81:1984;1991-1995.
8. 32P-based hybridizations. Anal. Biochem. 210:1993;235-244.
9. Holt J.G., Krieg N.R., Sneath P.H.A., Staley J.T., Williams S.T. Bergey's Manual of Determinative Bacteriology. 9th Edn. 1994;Williams and Wilkins, Baltimore.
10. Klein H., Palmer C.E., Knutson J.W. Studies on dental caries: I. Dental status and dental needs of elementary school children. Public Health Rep. 53:1938;751-765.
11. Loesche W.J. Role of Streptococcus mutans in human dental decay. Microbiol. Rev. 50:1986;353-380.
12. Marsh P.D., Martin M.V. Oral Microbiology. 1999;Chapman & Hall, London, UK.
13. Moore W.E.C., Moore L.V.H. The bacteria of periodontal diseases. Periodontology. 2000(5):1994;66-77.
14. Nyvad B., Kilian M. Microflora associated with experimental root surface caries in humans. Infect. Immun. 58:1990;1628-1633.
15. Papapanou P.N., Madianos P.N., Dahlen G., Sandros J. "Checkerboard" versus culture: a comparison between two methods for identification of subgingival microbiota. Eur. J. Oral Sci. 105:1997;389-396.
16. Paster B.J., Boches S.K., Galvin J.L., Ericson R.E., Lau C.N., Levanos V.A., Sahasrabudhe A., Dewhirst F.E. Bacterial diversity in human subgingival plaque. J. Bacteriol. 183:2001;3770-3783.
17. Petti S., Hausen H.W. Caries prediction by multiple salivary mutans streptococcal counts in caries-free children with different levels of fluoride exposure, oral hygiene and sucrose uptake. Caries Res. 34:2000;380-387.
18. Powell L.V. Caries prediction: a review of the literature. Community Dent. Oral Epidemiol. 26:1998;361-371.
19. Sambrook J., Fritsch E., Maniatis T. Molecular Cloning: A Laboratory Manual. 2nd Edn. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
20. Scherer S., Stevens D.A. Application of DNA typing methods to epidemiology and taxonomy of Candida species. J. Clin. Microbiol. 25:1987;675-679.
21. Schupbach P., Osterwalder V., Guggenheim B. Human root caries: microbiota in plaque covering sound carious and arrested carious root surfaces. Caries Res. 29:1995;382-395.
22. Sissons C.H. Artificial dental plaque biofilm model systems. Adv. Dent. Res. 11:1997;110.
23. Sissons C.H., Wong L., Cutress T.W. Patterns and rates of growth of microcosm dental plaque biofilms. Oral Microbiol. Immunol. 10:1995;160-167.
24. Sissons C.H., Wong L., An Y.H. Culture and analysis of bacterial biofilms. An Y.H., Friedman R.J. Handbook for Studying Bacterial Adhesion. 2000;133-169 Humana Press, Totowa.
25. Socransky S.S., Smith C., Martin L., Paster B.J., Dewhirst F.E., Levin A.E. "Checkerboard" DNA-DNA hybridization. Biotechniques. 17:1994;788-792.
26. Socransky S.S., Haffajee A.D., Cugini M.A., Smith C., Kent R.L. Microbial complexes in subgingival plaque. J. Clin. Periodontol. 25:1998;134-144.
27. Tanner A., Maiden M.F.G. Gingivitis and the initial periodontal lesion. Microb. Ecol. Health Dis. 9:1996;359-365.
28. van Houte J. Role of micro-organisms in caries etiology. J. Dent. Res. 73:1994;672-681.
29. van Ruyven F.O.J., Lingstrom P., van Houte J., Kent R. Relationship among mutans streptococci, "low-pH" bacteria, and iodophilic polysaccharide-producing bacteria in dental plaque and early enamel caries in humans. J. Dent. Res. 79:2000;778-784.
30. Wong L., Sissons C.H. A comparison of human dental plaque microcosm biofilms grown in an undefined medium and a chemically-defined artificial saliva. Arch. Oral Biol. 46:2001;477-486.
31. Ximenez-Fyvie L.A., Haffajee A.D., Martin L., Tanner A., Macuch P., Socransky S.S. Identification of oral Actinomyces species using DNA probes. Oral Microbiol. Immunol. 14:1999;257-265.