Combinatorial use of mRNA and two-dimensional electrophoresis expression data to choose relevant features for mass spectrometric identification

Proteomics

Volumn 2, Issue 10, 2002, Pages 1464-1473

  Patel, Ketan ^a   Stein, Rob ^b,c   Benvenuti, Silvia ^b   Zvelebil, Marketa J ^b,d  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b UNIVERSITY COLLEGE LONDON   (United Kingdom)

^c UNIVERSITY COLLEGE LONDON   (United Kingdom)

^d LUDWIG INSTITUTE FOR CANCER RESEARCH   (United Kingdom)

Author keywords

Differential gene expression; Differential protein expression; Regulons; Stimulons

Indexed keywords

ANALYTIC METHOD; ARTICLE; CYTOARCHITECTURE; GENE EXPRESSION REGULATION; GENE SEQUENCE; MASS SPECTROMETRY; MESSENGER RNA SYNTHESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEIN EXPRESSION; PROTEIN LOCALIZATION; PROTEOMICS; TWO DIMENSIONAL ELECTROPHORESIS; BIOLOGY; BREAST; CELL AGING; CODON; COMPUTER PROGRAM; DOWN REGULATION; ESCHERICHIA COLI; HUMAN; METABOLISM; METHODOLOGY; PROTEIN MICROARRAY; TWO DIMENSIONAL GEL ELECTROPHORESIS; UPREGULATION;

MESSENGER RNA; PROTEOME;

BREAST; CELL AGING; CODON; COMPUTATIONAL BIOLOGY; DOWN-REGULATION; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ESCHERICHIA COLI; HUMANS; MASS SPECTROMETRY; PROTEIN ARRAY ANALYSIS; PROTEOME; PROTEOMICS; RNA, MESSENGER; SOFTWARE; UP-REGULATION;

EID: 0036808640     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/1615-9861(200210)2:10<1464::AID-PROT1464>3.0.CO;2-9     Document Type: Article

References (20)

1. O'Farrell, P. H., J. Biol. Chem. 1975, 250, 4007-4021.
2. Klose, L., Humangenetik 1975, 26, 231-243.
3. VanBogelen, R. A., Schiller, E. E., Thomas, J. D., Neidhardt F. C., Electrophoresis 1999, 20, 2149-2159.
4. Klose, L., Electrophoresis 1999, 20, 643-652.
5. Neidhardt, F. C., Ingraham, J. L., Schaechter, M., Physiology of the Bacterial Cell: A Molecular Approach, Sinauer Publishing, Sunderland, MA 1990.
6. Sharma, S., Applied Multivariate Techniques, John Wiley, Chichester, UK 1996.
7. McLachlan, G. J., Discriminant Analysis and Statistical Pattern Recognition, John Wiley, New York 1992.
8. Voss, T., Haberl, P., Electrophoresis 2000, 21, 3345-3350.
9. Gygi, S. P., Corthals, G. L., Zhang, Y., Rochon, Y. et al., Proc. Natl. Acad. Sci. USA 2000, 97, 9390-9395.
10. Bennetzen, J. L., Hall, B. D., J. Biol. Chem. 1982, 257, 3026-3031.
11. Haverty, P. M., Weng, Z., Best, N. L., Auerbach, K. R. et al., Nucleic Acids Res. 2002, 30, 214-217.
12. Eisen, M. B., Spellman, P. T., Brown, P. O., Botstein, D. Proc. Natl. Acad. Sci. USA 1998, 95, 14863-14868.
13. Clauser, K. R., Baker, P. R., Burlingame, A. L., Anal. Chem. 1999 71, 2871-2882.
14. Benvenuti, S., Cramer, R., Quinn, C. C., Bruce, J. et al. Mol. Cell Proteomics 2002 1, 280-292.
15. Bishop, C. M., Neural Networks for Pattern Recognition, Clarendon Press, Oxford 1995.
16. Vapnik, V., Statistical Learning Theory, Wiley, Chichester, UK 1998.
17. Boucherie, H., Dujardin, G., Kermorgant, M., Monribot, C. et al., Yeast 1995, 11, 601-603.
18. Boucherie, H., Sagliocco, F., Joubert, R., Maillet, I. et al., Electrophoresis 1996, 17, 1683-1699.
19. Perrot, M., Sagliocco, F., Mini, T., Monribot, C. et al., Electrophoresis 1999, 20, 2280-2298.
20. Shevchenko, A., Jensen, O. N., Podtelejnikov, A. V., Sagliocco, F. et al., Proc. Natl. Acad. Sci. USA 1996, 93, 14440-14445.