Gencheck: A program for consistency checking and derivation of genotypes at co-dominant and dominant loci

Journal of Animal Breeding and Genetics

Volumn 119, Issue 5, 2002, Pages 350-360

  Bennewitz, J ^a   Reinsch, N ^a   Kalm, E ^a  

^a UNIVERSITY OF KIEL   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMALIA;

EID: 0036808528     PISSN: 09312668     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1439-0388.2002.00357.x     Document Type: Article

References (20)

1. Buetow, K. H., 1991: Influence of aberrant observations on high-resolution linkage analysis outcomes. Am. J. Hum. Genet. 49: 985-994.
2. Callen, D. F.; Thompson, A. D.; Shen, Y; Phillips, H. A; Richards, R. I.; Mulley, J. C.; Sutherland, G. R., 1993: Incidence and origin of "Null" alleles in the (AC)n microsatellite marker. Am. J. Hum. Genet. 52: 922-927.
3. Ehm, M. G.; Kimmel, M.; Cottingham Jr, R. W., 1995: Error detection in genetic linkage data for human pedigrees using likelihood ratio methods. J. Biol. Syst. 3: 13-25.
4. Ehm, M. G.; Kimmel, M.; Cottingham Jr, R. W., 1996: Error detection for genetic data using likelihood methods. Am. J. Hum. Genet. 58: 225-234.
5. Fujii, J.; Otsu, K.; Zorzato, F.; Deleon, S.; Khanna, V. K.; Weiler, J. E.; O'Brien, P. J.; Maclennan, D. H., 1991: Identification of a mutation in porcine rynodine receptor associated with malignant hyperthermia. Science 253: 448-451.
6. Glowatzki-Mullis, M. L.; Gaillard, C.; Wigger, G.; Fries, R., 1995: Microsatellite-based parentage control in cattle. Anim. Genet. 26: 7-12.
7. Goldstein, D. B.; Pollock, D. D., 1997: Launching microsatellites: A review of mutation processes and methods of phylogenetic inference. J. Hered. 88: 335-342.
8. International SNP Map Working Group, 2001: A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409: 928-933.
9. ISO/IEC 1539; 1991: Information Technology - Programming Languages - Fortran.
10. ISO/IEC 9075; 1992: Information Technology - Database Languages - SQL.
11. Israel, C.; Weller, J. I., 2000: Effect of misidentification on genetic gain and estimation of breeding value in dairy cattle populations. J. Dairy Sci. 83: 181-187.
12. Kriegesmann, B.; Jansen, S.; Baumgartner, B. G.; Brenig, B.; 1997: Partial genomic structure of the bovine CD18 gene and the refinement of test for bovine leukocyte adhesion deficiency. J. Dairy Sci. 80: 2547-2549.
13. Lange, K., Weeks, D.; Boehnke, M., 1988: Programs for pedigree analysis: MENDEL, FISHER and dGENE. Genet. Epidemiol. 5: 471-472.
14. Meuwissen, T. H. E.; Goddard, M. E., 1996: The use of marker haplotypes in animal breeding schemes. Genet. Sel. Evol. 28: 161-176.
15. O'Connell, J. R.; Weeks, D.E., 1998: PedCheck: A program for identification of genotype incompatibilities in linkage analysis. Am. J. Hum. Genet. 63: 259-266.
16. Reinsch, N., 1999: A multiple-species, multiple-project database for genotypes at codominant loci. J. Anim. Breed. Genet. 116: 425-435.
17. Rempel, W. E.; Lu, M.; Kandelgy, S. E.; Kennedy, C. F. H., Irvin, L. R.; Mickelson, J. R.; Louis C. F., 1993: Relative accuracy of the halothane challenge test and a molecular genetic test in detecting the gene for porcine stress syndrome. J. Anim. Sci. 71: 1395-1399.
18. Stringham, H. M.; Boehnke, M. 1996: Identifying marker typing incompatibilities in linkage analysis. Am. J. Hum. Genet. 59: 946-950.
19. Thomsen, H., 2000: Investigations on Bovine Marker Maps, Blood Groups and QTL in the ADR Granddaughter Design. Schriftenreihe des Institutes für Tierzucht und Tierhaltung der Christian-Albrechts-Universität zu Kiel, Heft 118.
20. Zhivotovsky, L. A., 1999: Estimating population structure in diploids with multilocus dominant DNA markers. Mol. Ecol. 8: 907-913.