Molecular and genetic analyses of transgenic plants: Considerations and approaches

Plant Science

Volumn 163, Issue 4, 2002, Pages 673-681

  Bhat, S R ^a   Srinivasan, S ^a  

^a NATIONAL RESEARCH CENTRE ON PLANT BIOTECHNOLOGY   (India)

Author keywords

Genetic analysis; Molecular analysis; Plant transformation; Somaclonal variation; Transgenics

Indexed keywords

CROPS; GENES; GENETIC ENGINEERING; MOLECULAR BIOLOGY; PHYSIOLOGY;

DEVELOPMENTAL BIOLOGY;

PLANTS (BOTANY);

EID: 0036806428     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-9452(02)00152-8     Document Type: Review

References (49)

1. C. James, Global Review of Commercialized Transgenic Crops:2001, ISAAA Briefs No. 24, Preview, ISAAA, Ithaca, NY, 2001.
2. P. Christou, The biotechnology of crop legumes, Euphytica 74 (1994) 165-185.
3. T.M. Klein, W. Zhang, Progress in the genetic transformation of recalcitrant crop species, Aspects Appl. Biol. 39 (1994) 35-44.
4. I.J. Puddephat, T.J. Riggs, T.M. Fenning, Transformation of Brassica oleracea L.: A criticai review, Mol. Breed. 2 (1996) 185-210.
5. R.G. Birch, Plant transformation: Problems and strategies for practical application, Annu. Rev. Plant Physiol. Plant Mol. Biol. 48 (1997) 297-326.
6. P.J. Larkin, S.C. Scowcroft, Somaclonal variation-a novel source of variability from cell cultures for crop improvement, Theor. Appl. Genet. 60 (1981) 197-214.
7. S.M. Jain, Tissue culture-derived variation in crop improvement, Euphytica 118 (2001) 153-166.
8. H. Hirochika, K. Sugimoto, H. Tsugawa, M. Kauda, Retrotransposons of rice involved in mutations induced by tissue culture, Proc. Natl. Acad. Sci. USA 93 (1996) 7783-7788.
9. S. Pereza-Echeverria, V.A. Herra-Valencia, A. James, Detection of DNA methylation changes in micropropagated banana plants using methylation-sensitive amplification polymorphism (MSAP), Plant Sci. 161 (2001) 359-367.
10. R.L. Phillips, S.M. Kaeppler, P. Olhoft, Genetic instability of plant tissue cultures: Breakdown of normal controls, Proc. Natl. Acad. Sci. USA 91 (1994) 5222-5226.
11. P. Berthomieu, C. Beclin, F. Charlot, C. Dore, L. Jouanin, Routine transformation of rapid cycling cabbage (Brassica oleracea)-molecular evidence for regeneration of chimeras, Plant Sci. 96 (1994) 223-235.
12. A. Karp, Somaclonal variation as a tool for crop improvement, Euphytica 85 (1995) 295-302.
13. S.B. Maqbool, P. Christou, Multiple traits of agronomic importance in transgenic indica rice plants: Analysis of transgene integration patterns, expression levels and stability, Mol. Breed. 5 (1999) 471-480.
14. P.T. Lynch, J. James, N.W. Blackhall, M.R. Davey, J.B. Power, E.C. Cocking, M.R. Nelson, D.M. Bigelow, T.V. Orum, C.E. Orth, W. Schuh, The phenotypic characterization of R2 generation transgenic rice plants under field and glasshouse conditions, Euphytica 85 (1995) 395-401.
15. W. Liu, R.S. Torisky, K.P. McAllister, S. Avdishko, D. Hildebraand, G.B. Collins, Somatic embryo cycling: Evaluation of a novel transformation and assay system for seed-specific gene expression in soybean, Plant Cell Tiss. Org. Cult. 47 (1996) 33-42.
16. R.R. Mendel, Biolistic transformation of cucumber using embryogenic suspension cultures: Long-term expression of reporter gene, Plant Sci. 112 (1995) 197-206.
17. R.J. Singh, T.M. Klein, C.J. Mauvais, S. Knowlton, T. Hymowitz, C.M. Kostow, Cytological characterization of transgenic soybean, Theor. Appl. Genet. 96 (1998) 319-324.
18. W. Schuh, M.R. Nelson, D.M. Bigelow, T.V. Orum, C.E. Orth, P.T. Lynch, P.S. Eyles, N.W. Blackhall, J. Jones, E.C. Cocking, M.R. Devey, The phenotypic characterization of R2-generation transgenic rice plants under field conditions, Plant Sci. 89 (1993) 69-79.
19. P. Bregitzer, S.E. Halbert, P.G. Lemaux, Somaclonal variation in the progeny of transgenic barley, Theor. Appl. Genet. 96 (1998) 421-425.
20. H.W. Choi, P.G. Lemaux, M.-J. Cho, Increased chromosomal variation in transgenic versus non-transgenic barley (Hordeum vulgare L.) plants, Crop Sci. 40 (2001) 524-533.
21. F. Prols, P. Meyer, The methylation patterns of chromosomal integration regions influence gene activity of transferred DNA in Petunia hybrida, Plant J. 2 (1992) 465-475.
22. J.F. Topping, W. Wei, K. Lindsey, Functional tagging of regulatory elements in the plant genome, Development 112 (1991) 1009-1019.
23. A. Kohli, M. Leech, P. Vain, D.A. Laurie, P. Christou, Transgene organization in rice engineered through direct DNA transfer supports a two-phase integration mechanism mediated by the establishment of integration hot-spots, Proc. Natl. Acad. Sci. USA 95 (1998) 7203-7208.
24. V.A. Iglesias, E.A. Moscone, I. Papp, F. Neuhuber, S. Michalowaski, T. Phelan, S. Spiker, M. Matzke, A.J.M. Matzke, Molecular and cytogenetic analyses of stably and unstably expressed transgenic loci in tobacco, Plant Cell 9 (1997) 1251-1264.
25. M. Kononov, B. Bassuner, S. Gelvin, Integration of T-DNA binary vector 'backbone' sequences into tobacco genome: evidence of multiple complex patterns of integration, Plant J. 10 (1997) 165-174.
26. S. De Buck, C. De Wilde, M. Van Montagu, A. Depicker, T-DNA vector backbone sequences are frequently integrated into the genome of transgenic plants obtained by Agrobacterium-mediated transformation, Mol. Breed. 6 (2000) 459-468.
27. R. Jorgensen, P. Cluster, Q. Que, J. English, C. Napoli, Chalcone synthase cosuppression phenotypes in petunia flowers: Comparison of sense vs. antisense constructs and single vs. complex T-DNA sequences, Plant Mol. Biol. 31 (1996) 957-973.
28. S. Dai, P. Zhang, P. Marmey, S. Zhang, W. Tian, S. Chen, R.N. Beachy, C. Fauquet, Comparative analysis of transgenic rice plants obtained by Agrobacterium-mediated transformation and particle bombardment, Mol. Breed. 7 (2001) 69-79.
29. M. Stam, J.N.M. Mol, J.M. Kooter, The silence of genes in transgenic plants, Annals Bot. 79 (1997) 3-12.
30. H. Vaucheret, M. Fagard, Transcriptional gene silencing in plants: Targets, inducers and regulators, Trends Genet. 17 (2001) 29-35.
31. F. Dorlhac de Borne, M. Vincenz, Y. Chupeau, H. Vaucheret, Cosuppression of nitrate reductase host genes and transgenes in transgenic tobacco plants, Mol. Gen. Genet. 243 (1994) 613-621.
32. A.M. Bhatt, C. Lister, N. Crowford, C. Dean, The transposition frequency of tag1 elements is increased in transgenic Arabidopsis lines, Plant Cell 10 (1998) 427-434.
33. A. Lecardonnel, G. Prevost, A. Beaujean, R.S. Sangwan, B.S. Sangwan-Norreel, Genetic transformation of potato with nptII-gus marker genes enhances foliage consumption by Colorado potato beetle larvae, Mol. Breed. 5 (1999) 441-451.
34. S. De Turck, P. Giordanengo, A. Cherqui, C. Ducrocq-Assaf, B.S. Sangwan-Norreel, Transgenic potato plants expressing the nptII-gus marker genes affect survival and development of the Colorado potato beetle, Plant Sci. 162 (2002) 373-380.
35. I. Potrykus, Gene transfer to plants: Assessment of published approaches and results, Annu. Rev. Plant Physiol. Plant Mol. Biol. 42 (1991) 205-225.
36. M.A. Schmidt, W.A. Parrott, Quantitative detection of transgenes in soybean (Glycine max (L.) Merrill) and peanut (Arachis hypogaea L.) by real time polymerase chain reaction, Plant Cell Rep. 20 (2001) 422-428.
37. TM-derived transgenic maize, Plant Cell Rep. 20 (2002) 948-954.
38. A. Limanton-Grevet, M. Jullien, Agrobacterium-mediated transformation of Asparagus officinalis L.: Molecular and genetic analysis of transgenic plants, Mol. Breed. 7 (2001) 141-150.
39. M. Joersbo, J. Brunstedt, J. Marcussen, F. Okkels, Transformation of the endospermous legume guar (Cyamopsis tetragonoloba L.) and analysis of transgene transmission, Mol. Breed. 5 (1999) 521-529.
40. J. Dong, P. Kharb, W. Teng, T.C. Hall, Characterization of rice transformed via an Agrobacterium-mediated inflorescence approach, Mol. Breed. 7 (2001) 187-194.
41. K.A. Gomez, A.A. Gomez, Statistical Procedures for Agricultural Research, 2nd ed., John Wiley and Sons, New York, 1984, pp. 97-119.
42. N. Bechtold, J. Ellis, G. Pelletier, In planta Agrobacterium-mediated gene transfer by infiltration of adult Arabidopsis thaliana plants, C.R. Acad. Sci. Paris, Life Sci. 316 (1993) 1194-1199.
43. S.J. Clough, A.F. Bent, Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana, Plant J. 16 (1998) 735-743.
44. A.T. Trieu, S.H. Burleigh, I.V. Kardailsky, I.E. Maldonado-Mendoza, W.K. Versaw, L.A. Blaylock, H. Shin, T.-J. Chiou, H. Katagi, G.R. Bewbre, D. Weigel, M.J. Harrison, Transformation of Medicgo truncatula via infiltration of seedlings or flowering plants with Agrobacterium, Plant J. 22 (2000) 531-541.
45. V.K. Rohini, K.S. Rao, Transformation of peanut (Arachis hypogea L) with tobacco chitinase gene: Variable response of transformants to leal spot disease, Plant Sci. 160 (2001) 889-898.
46. I.S. Curtis, H.G. Nam, Transgenic radish (Raphanus sativus L. longipinnatus Bailey) by floral-dip method-plant development and surfactant are important in optimizing transformation efficiency, Transgenic Res. 10 (2001) 363-371.
47. L. Mlynarova, A. Loonen, J. Heldens, R.C. Jansen, P. Keizer, W.J. Stiekema, J.-P. Nap, Reduced position effect in mature transgenic plants conferred by the chicken lysozyme matrix-associated region, Plant Cell 6 (1994) 417-426.
48. L. Mlynarova, L.C.P. Keizer, W.J. Stiekema, J.-P. Nap, Approaching lower limits of transgene variability, Plant Cell 8 (1996) 1589-1599.
49. V. Srivastava, D.W. Ow, Single-copy primary transformants of maize obtained through the co-introduction of a recombinase-expressing construct, Plant Mol. Biol. 46 (2001) 561-566.