RNA recognition site of PP7 coat protein

Nucleic Acids Research

Volumn 30, Issue 19, 2002, Pages 4138-4144

  Lim, Francis ^a   Peabody, David S ^a  

^a UNIVERSITY OF NEW MEXICO SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COAT PROTEIN; GUANIDINE; PURINE; RNA; URIDINE;

BACTERIOPHAGE; BINDING KINETICS; COLIPHAGE; CONTROLLED STUDY; ESCHERICHIA COLI; MODEL; MOLECULAR LIBRARY; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN TERTIARY STRUCTURE; PSEUDOMONAS; REVIEW; RNA BINDING; RNA SEQUENCE; RNA STRUCTURE; WILD TYPE;

ESCHERICHIA COLI; NEGIBACTERIA; PSEUDOMONAS;

EID: 0036799597     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkf552     Document Type: Review

References (16)

1. Romaniuk,P.J., Lowary,P.T., Wu,H.-N., Stormo,G. and Uhlenbeck,O.C. (1987) RNA binding site of R17 coat protein. Biochemistry, 26, 1563-1568.
2. Schneider,D., Tuerk,C. and Gold,L. (1992) Selection of high affinity RNA ligands to the bacteriophage R17 coat protein. J. Mol. Biol., 228, 862-869.
3. Hirao,I., Spingola,M., Peabody,D.S. and Ellington,A.D. (1999) The limits of specificity: an experimental analysis with RNA aptamers to MS2 coat protein variants. Mol. Divers., 4, 75-89.
4. Whitherell,G.W. and Uhlenbeck,O.C. (1989) Specific RNA binding by Qβ coat protein. Biochemistry, 28, 71-76.
5. Spingola,M., Lim,F. and Peabody,D.S. (2002) Recognition of diverse RNAs by a single protein structural framework. Arch. Biochem. Biophys., 405, 122-129.
6. Lim,F., Downey,T.P. and Peabody,D.S. (2001) RNA binding by PP7 cost protein. J. Biol. Chem., 276, 22507-22513.
7. Conrad,R.C., Giver,L., Tian,Y. and Ellington,A.D. (1996) In vitro selection of nucleic acid aptamers that bind proteins. Methods Enzymol., 267, 336-367.
8. Draper,D.E., White,S.A. and Kean,J.M. (1988) Preparation of specific ribosomal RNA fragments. Methods Enzymol., 164, 221-237.
9. Carey,J., Cameron,V., de Haseth,P.L. and Uhlenbeck,O.C. (1983) Sequence-specific interaction of R17 coat protein with its ribonucleic acid binding site. Biochemistry, 22, 2601-2610.
10. Jacobson,A.B. and Zuker,M. (1993) Structural analysis by energy dot plot of a large mRNA. J. Mol. Biol., 233, 261-269.
11. Draper,D.E. (1999) Themes in RNA-protein recognition. J. Mol. Biol. 293, 235-270.
12. Valegård,K., Murray,J.B., Stockey,P.G., Stonehouse,N.J. and Liljas,L. (1994) Crystal structure of an RNA bacteriophage coat protein-operator complex. Nature. 371, 623-626.
13. Valegård,K., Murray,J.B., Stonehouse,N.J., van don Worm,S., Stockley,P.G, and Liljas,L. (1997) The three-dimensional structures of two complexes between recombinant MS2 capsids and RNA operator fragment reveal sequence-specific protein-RNA interactions. J. Mol. Biol., 270, 724-738.
14. Convery,M.A., Rowsell,S., Stonehouse,N.J., Ellington,A.D., Hirao,I., Murray,J.B., Peabody,D.S., Phillips,S.E.V. and Stockley,P.G. (1998) Crystal structure of an RNA aptamer-protein complex at 2.8 Å resolution. Nature Struct. Biol., 5, 133-139.
15. Spingola,M. and Peabody,D.S. (1997) MS2 coat protein mutants which bind Qbeta RNA. Mucleic Acids Res., 25, 2808-2815.
16. Lim,F., Spingola,M. and Peabody,DS. (1996) The RNA binding site of bacteriophage Qβ cost protein. J. Biol. Chem., 271, 31839-31845.