메뉴 건너뛰기




Volumn 184, Issue 20, 2002, Pages 5633-5640

Divergent structure and regulatory mechanism of proline catabolic systems: Characterization of the putAP proline catabolic operon of Pseudomonas aeruginosa PAO1 and its regulation by PruR, an AraC/XylS family protein

Author keywords

[No Author keywords available]

Indexed keywords

ARAC PROTEIN; CARBON; GENE PRODUCT; HYDROGENASE; NITROGEN; OUTER MEMBRANE PROTEIN; PROLINE; PROTEIN PRUR; PROTEIN PUTAP; PYRROLINE 5 CARBOXYLATE REDUCTASE; UNCLASSIFIED DRUG;

EID: 0036785229     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.184.20.5633-5640.2002     Document Type: Article
Times cited : (20)

References (44)
  • 1
    • 84981626572 scopus 로고
    • The release of organic substances by cereal roots into the soil
    • Barber, D. A., and J. K. Martin. 1976. The release of organic substances by cereal roots into the soil. New Physiol. 76:68-80.
    • (1976) New Physiol. , vol.76 , pp. 68-80
    • Barber, D.A.1    Martin, J.K.2
  • 2
    • 0035901522 scopus 로고    scopus 로고
    • Redox properties of the PutA protein from Escherichia coli and the influence of the flavin redox state on PutA-DNA interactions
    • Becker, D. F., and E. A. Thomas. 2001. Redox properties of the PutA protein from Escherichia coli and the influence of the flavin redox state on PutA-DNA interactions. Biochemistry 40:4714-4721.
    • (2001) Biochemistry , vol.40 , pp. 4714-4721
    • Becker, D.F.1    Thomas, E.A.2
  • 3
    • 0000531542 scopus 로고
    • Isolation, purification and chemical composition of maize root cap slime
    • Chabound, A. 1983. Isolation, purification and chemical composition of maize root cap slime. Plant Soil 73:395-402.
    • (1983) Plant Soil , vol.73 , pp. 395-402
    • Chabound, A.1
  • 4
    • 0029848539 scopus 로고    scopus 로고
    • The putA gene of Agrobacterium tumefaciens is transcriptionally activated in response to proline by an Lrp-like protein and is not autoregulated
    • Cho, K., and S. C. Winans. 1996. The putA gene of Agrobacterium tumefaciens is transcriptionally activated in response to proline by an Lrp-like protein and is not autoregulated. Mol. Microbiol. 22:1025-1033.
    • (1996) Mol. Microbiol. , vol.22 , pp. 1025-1033
    • Cho, K.1    Winans, S.C.2
  • 5
    • 0031019655 scopus 로고    scopus 로고
    • Transcriptional regulation and locations of Agrobacterium tumefaciens genes required for complete catabolism of octopine
    • Cho, K., C. Fuqua, and S. C. Winans. 1997. Transcriptional regulation and locations of Agrobacterium tumefaciens genes required for complete catabolism of octopine. J. Bacteriol. 179:1-8.
    • (1997) J. Bacteriol. , vol.179 , pp. 1-8
    • Cho, K.1    Fuqua, C.2    Winans, S.C.3
  • 6
    • 0020788968 scopus 로고
    • A new technique for genetic engineering of Agrobacterium Ti plasmid
    • Comai, L., C. Schilling-Cordaro, A. Mergia, and C. M. Houck. 1983. A new technique for genetic engineering of Agrobacterium Ti plasmid. Plasmid 10:21-30.
    • (1983) Plasmid , vol.10 , pp. 21-30
    • Comai, L.1    Schilling-Cordaro, C.2    Mergia, A.3    Houck, C.M.4
  • 7
    • 0024999332 scopus 로고
    • Improved detection of helix-turn-helix DNA-binding motif in protein sequence
    • Dodd, I. B., and J. B. Egan. 1990. Improved detection of helix-turn-helix DNA-binding motif in protein sequence. Nucleic Acids Res. 18:5019-5026.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 5019-5026
    • Dodd, I.B.1    Egan, J.B.2
  • 8
    • 0023272340 scopus 로고
    • Interposon mutagenesis of soil and water bacteria: A family of DNA fragments designed for in vivo insertional mutagenesis of Gram-negative bacteria
    • Fellay, R., J. Frey, and H. Krisch. 1987. Interposon mutagenesis of soil and water bacteria: a family of DNA fragments designed for in vivo insertional mutagenesis of Gram-negative bacteria. Gene 52:147-154.
    • (1987) Gene , vol.52 , pp. 147-154
    • Fellay, R.1    Frey, J.2    Krisch, H.3
  • 10
    • 0017744884 scopus 로고
    • The genetic organization of arginine biosynthesis in Pseudomonas aeruginosa
    • Haas, D., B. W. Holloway, A. Schamböck, and T. Leisinger. 1977. The genetic organization of arginine biosynthesis in Pseudomonas aeruginosa. Mol. Gen. Genet. 154:7-22.
    • (1977) Mol. Gen. Genet. , vol.154 , pp. 7-22
    • Haas, D.1    Holloway, B.W.2    Schamböck, A.3    Leisinger, T.4
  • 12
    • 0032575051 scopus 로고    scopus 로고
    • A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequence: Application for isolation of unmarked Pseudomonas mutants
    • Hoang, T. T., R. R. Karkhoff-Schweizer, A. J. Kutchma, and H. P. Schweizer. 1998. A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequence: application for isolation of unmarked Pseudomonas mutants. Gene 212:77-86.
    • (1998) Gene , vol.212 , pp. 77-86
    • Hoang, T.T.1    Karkhoff-Schweizer, R.R.2    Kutchma, A.J.3    Schweizer, H.P.4
  • 13
    • 0028007233 scopus 로고
    • Genomic mapping of Pseudomonas aeruginosa PAO
    • Holloway, B. W., U. Römling, and B. Tümmler. 1994. Genomic mapping of Pseudomonas aeruginosa PAO. Microbiology 140:2907-2929.
    • (1994) Microbiology , vol.140 , pp. 2907-2929
    • Holloway, B.W.1    Römling, U.2    Tümmler, B.3
  • 14
    • 0025675856 scopus 로고
    • High efficiency transformation of Escherichia coli with plasmids
    • Inoue, H., H. Nojima, and H. Okayama. 1990. High efficiency transformation of Escherichia coli with plasmids. Gene 96:23-28.
    • (1990) Gene , vol.96 , pp. 23-28
    • Inoue, H.1    Nojima, H.2    Okayama, H.3
  • 15
    • 0029328332 scopus 로고
    • Characterization of a Rhizobium meliloti proline dehydrogenase mutant altered in nodulation efficiency and competitiveness on alfalfa roots
    • Jiménez-Zurdo, J. I., P. van Dillewijn, M. J. Soto, M. R. de Felipe, J. Olivares, and N. Toro. 1995. Characterization of a Rhizobium meliloti proline dehydrogenase mutant altered in nodulation efficiency and competitiveness on alfalfa roots. Mol. Plant-Microbe Interact. 8:492-498.
    • (1995) Mol. Plant-Microbe Interact. , vol.8 , pp. 492-498
    • Jiménez-Zurdo, J.I.1    Van Dillewijn, P.2    Soto, M.J.3    De Felipe, M.R.4    Olivares, J.5    Toro, N.6
  • 16
    • 0031013582 scopus 로고    scopus 로고
    • The Rhizobium meliloti putA gene: Its role in the establishment of the symbiotic interaction with alfalfa
    • Jiménez-Zurdo, J. I., F. M. Garia-Rodriguez, and N. Toro. 1997. The Rhizobium meliloti putA gene: its role in the establishment of the symbiotic interaction with alfalfa. Mol. Microbiol. 23:85-93.
    • (1997) Mol. Microbiol. , vol.23 , pp. 85-93
    • Jiménez-Zurdo, J.I.1    Garia-Rodriguez, F.M.2    Toro, N.3
  • 17
    • 0028853504 scopus 로고
    • Expression of the putA gene encoding proline dehydrogenase from Rhodobacter capsulatus is independent of NtrC regulation but requires an Lrp-like activator protein
    • Keuntje, B., B. Masepohl, and W. Klipp. 1995. Expression of the putA gene encoding proline dehydrogenase from Rhodobacter capsulatus is independent of NtrC regulation but requires an Lrp-like activator protein. J. Bacteriol. 177:6432-6439.
    • (1995) J. Bacteriol. , vol.177 , pp. 6432-6439
    • Keuntje, B.1    Masepohl, B.2    Klipp, W.3
  • 18
    • 0029135364 scopus 로고
    • Gene regulatory proteins and their interaction with DNA
    • Klug, A. 1995. Gene regulatory proteins and their interaction with DNA. Ann. N. Y. Acad. Sci. 758:143-160.
    • (1995) Ann. N. Y. Acad. Sci. , vol.758 , pp. 143-160
    • Klug, A.1
  • 19
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 20
    • 0028117603 scopus 로고
    • 1-pyrroline-5-carboxylate dehydrogenase domains of the multifunctional Escherichia coli PutA protein
    • 1-pyrroline-5-carboxylate dehydrogenase domains of the multifunctional Escherichia coli PutA protein. J. Mol. Biol. 243:950-956.
    • (1994) J. Mol. Biol. , vol.243 , pp. 950-956
    • Ling, M.1    Allen, S.W.2    Wood, J.M.3
  • 22
  • 23
    • 0000146510 scopus 로고    scopus 로고
    • Amino acids and carbon sources
    • F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.). ASM Press, Washington, D.C.
    • McFall, E., and E. B. Newman. 1996. Amino acids and carbon sources, p. 358-379. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
    • (1996) Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. , pp. 358-379
    • McFall, E.1    Newman, E.B.2
  • 24
    • 0020371834 scopus 로고
    • Purification and properties of the bifunctional proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase from Pseudomonas aeruginosa
    • Meile, L., and T. Leisinger. 1982. Purification and properties of the bifunctional proline dehydrogenase/1- pyrroline-5-carboxylate dehydrogenase from Pseudomonas aeruginosa. Eur. J. Biochem. 129:67-75.
    • (1982) Eur. J. Biochem. , vol.129 , pp. 67-75
    • Meile, L.1    Leisinger, T.2
  • 25
    • 0020326911 scopus 로고
    • Regulation of proline catabolism in Pseudomonas aeruginosa PAO
    • Meile, L., L. Soldati, and T. Leisinger. 1982. Regulation of proline catabolism in Pseudomonas aeruginosa PAO. Arch. Microbiol. 132:189-193.
    • (1982) Arch. Microbiol. , vol.132 , pp. 189-193
    • Meile, L.1    Soldati, L.2    Leisinger, T.3
  • 26
  • 27
    • 0028951129 scopus 로고
    • Proline dehydrogenase activity of the transcriptional repressor PutA is required for induction of the put operon by proline
    • Muro-Pastor, A. M., and S. Maloy. 1995. Proline dehydrogenase activity of the transcriptional repressor PutA is required for induction of the put operon by proline. J. Biol. Chem. 270:9819-9827.
    • (1995) J. Biol. Chem. , vol.270 , pp. 9819-9827
    • Muro-Pastor, A.M.1    Maloy, S.2
  • 28
    • 0034750704 scopus 로고    scopus 로고
    • Molecular characterization and regulation of the aguBA operon, responsible for agmatine utilization in Pseudomonas aeruginosa PAO1
    • Nakada, Y., Y. Jiang, T. Nishijyo, Y. Itoh, and C. D. Lu. 2001. Molecular characterization and regulation of the aguBA operon, responsible for agmatine utilization in Pseudomonas aeruginosa PAO1. J. Bacteriol. 183:6517-6524.
    • (2001) J. Bacteriol. , vol.183 , pp. 6517-6524
    • Nakada, Y.1    Jiang, Y.2    Nishijyo, T.3    Itoh, Y.4    Lu, C.D.5
  • 29
    • 0026728291 scopus 로고
    • Evolutionary genetics of the proline permease gene (putP) and the control region of the proline utilization operon in populations of Salmonella and Escherichia coli
    • Nelson, K., and R. K. Selander. 1992. Evolutionary genetics of the proline permease gene (putP) and the control region of the proline utilization operon in populations of Salmonella and Escherichia coli. J. Bacteriol. 174:6886-6893.
    • (1992) J. Bacteriol. , vol.174 , pp. 6886-6893
    • Nelson, K.1    Selander, R.K.2
  • 30
    • 0035018558 scopus 로고    scopus 로고
    • The CbrA-CbrB two-component regulatory system controls the utilization of multiple carbon and nitrogen sources in Pseudomonas aeruginosa
    • Nishijyo, T., D. Haas, and Y. Itoh. 2001. The CbrA-CbrB two-component regulatory system controls the utilization of multiple carbon and nitrogen sources in Pseudomonas aeruginosa. Mol. Microbiol. 40:917-931.
    • (2001) Mol. Microbiol. , vol.40 , pp. 917-931
    • Nishijyo, T.1    Haas, D.2    Itoh, Y.3
  • 31
    • 0029156171 scopus 로고
    • Protein phosphorylation on serine, threonine, and tyrosine residues modulates membrane-protein interaction and transcriptional regulation in Salmonella typhimurium
    • Ostrovsky, P. C., and S. Maloy. 1995. Protein phosphorylation on serine, threonine, and tyrosine residues modulates membrane-protein interaction and transcriptional regulation in Salmonella typhimurium. Genes Dev. 9:2034-2041.
    • (1995) Genes Dev. , vol.9 , pp. 2034-2041
    • Ostrovsky, P.C.1    Maloy, S.2
  • 32
    • 0026682657 scopus 로고
    • Transcription factors: Structural families and principles of DNA recognition
    • Pabo, C. O., and R. T. Sauer. 1992. Transcription factors: structural families and principles of DNA recognition. Annu. Rev. Biochem. 61:1053-1095.
    • (1992) Annu. Rev. Biochem. , vol.61 , pp. 1053-1095
    • Pabo, C.O.1    Sauer, R.T.2
  • 34
    • 0021839517 scopus 로고
    • Transposon insertion mutagenesis of Pseudomonas aeruginosa with a Tn5 derivative: Application to physical mapping of the arc gene cluster
    • Rella, M., A. Mercenier, and D. Haas. 1985. Transposon insertion mutagenesis of Pseudomonas aeruginosa with a Tn5 derivative: application to physical mapping of the arc gene cluster. Gene 33:293-303.
    • (1985) Gene , vol.33 , pp. 293-303
    • Rella, M.1    Mercenier, A.2    Haas, D.3
  • 36
    • 0001413058 scopus 로고    scopus 로고
    • Sinorhizobium meliloti putA gene regulation: A new model within the family Rhizobiaceae
    • Soto, M. J., J. I. Jiménez-Zurdo, P. van Dillewijn, and N. Toro. 2000. Sinorhizobium meliloti putA gene regulation: a new model within the family Rhizobiaceae. J. Bacteriol. 182:1935-1941.
    • (2000) J. Bacteriol. , vol.182 , pp. 1935-1941
    • Soto, M.J.1    Jiménez-Zurdo, J.I.2    Van Dillewijn, P.3    Toro, N.4
  • 38
    • 0034739007 scopus 로고    scopus 로고
    • Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen
    • Stover, C. V., et al. 2000. Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature 406:959-964.
    • (2000) Nature , vol.406 , pp. 959-964
    • Stover, C.V.1
  • 39
    • 0030058589 scopus 로고    scopus 로고
    • Isolation, DNA sequence analysis, and mutagenesis of a proline dehydrogenase gene (putA) from Bradyrhizobium japonicum
    • Straub, P. F., P. H. Reynolds, S. Althomsons, V. Mett, Y. Zhu, G. Shearer, and D. H. Kohl. 1996. Isolation, DNA sequence analysis, and mutagenesis of a proline dehydrogenase gene (putA) from Bradyrhizobium japonicum. Appl. Environ. Microbiol. 62:221-229.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 221-229
    • Straub, P.F.1    Reynolds, P.H.2    Althomsons, S.3    Mett, V.4    Zhu, Y.5    Shearer, G.6    Kohl, D.H.7
  • 40
    • 0032852996 scopus 로고    scopus 로고
    • Regulation of flavin dehydrogenase compartmentalization: Requirements for PutA-membrane association in Salmonella typhimurium
    • Surber, M. W., and S. Maloy. 1999. Regulation of flavin dehydrogenase compartmentalization: requirements for PutA-membrane association in Salmonella typhimurium. Biochim. Biophys. Acta 1421:5-18.
    • (1999) Biochim. Biophys. Acta , vol.1421 , pp. 5-18
    • Surber, M.W.1    Maloy, S.2
  • 41
    • 0036083835 scopus 로고    scopus 로고
    • AraC-XylS database: A family of positive transcriptional regulators in bacteria
    • Tobes, R., and J. L. Ramos. 2002. AraC-XylS database: a family of positive transcriptional regulators in bacteria. Nucleic Acids Res. 30:318-321.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 318-321
    • Tobes, R.1    Ramos, J.L.2
  • 42
    • 0035462338 scopus 로고    scopus 로고
    • Construction and environmental release of a Sinorhizobium meliloti strain genetically modified to be more competitive for alfalfa nodulation
    • van Dillewijn, P., M. J. Soto, P. J. Villadas, and N. Toro. 2001. Construction and environmental release of a Sinorhizobium meliloti strain genetically modified to be more competitive for alfalfa nodulation. Appl. Environ. Microbiol. 67:3860-3865.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 3860-3865
    • Van Dillewijn, P.1    Soto, M.J.2    Villadas, P.J.3    Toro, N.4
  • 43
    • 0023634094 scopus 로고
    • Production of single-stranded plasmid DNA
    • Vieira, J., and J. Messing. 1987. Production of single-stranded plasmid DNA. Methods Enzymol. 153:3-11.
    • (1987) Methods Enzymol. , vol.153 , pp. 3-11
    • Vieira, J.1    Messing, J.2
  • 44
    • 0037870958 scopus 로고    scopus 로고
    • Proline catabolism by Pseudomonas putida: Cloning, characterization, and expression of the put genes in the presence of root exudates
    • Vilchez, S., L. Molina, C. Ramos, and J. L. Ramos. 2000. Proline catabolism by Pseudomonas putida: cloning, characterization, and expression of the put genes in the presence of root exudates. J. Bacteriol. 182:91-99.
    • (2000) J. Bacteriol. , vol.182 , pp. 91-99
    • Vilchez, S.1    Molina, L.2    Ramos, C.3    Ramos, J.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.