Characterizing the micronuclear gene patterns in ciliates

Theory of Computing Systems

Volumn 35, Issue 5, 2002, Pages 501-519

  Ehrenfeucht, Andrzej ^a   Harju, Tero ^b   Petre, Ion ^b   Rozenberg, Grzegorz ^a,c  

^a UCB 450   (United States)

^b UNIVERSITY OF TURKU   (Finland)

^c LEIDEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; CILIATES; NUCLEUS;

BIOCHEMICAL ENGINEERING; BIOTECHNOLOGY; COMPUTATIONAL METHODS; DNA; GENES; PROTEINS; RNA; SILICON;

MOLECULAR BIOLOGY;

EID: 0036768802     PISSN: 14324350     EISSN: 14330490     Source Type: Journal    
DOI: 10.1007/s00224-002-1043-9     Document Type: Conference Paper

References (12)

1. Ehrenfeucht, A., Harju, T., Petre, I., Prescott, D. M., and Rozenberg, G., Formal systems for gene assembly in ciliates, Theoret. Comput. Sci., to appear.
2. Ehrenfeucht, A., Petre, I., Prescott, D. M., and Rozenberg, G., Universal and simple operations for gene assembly in ciliates, in C. Martin-Vide, V. Mitrana (eds.), Where Mathematics, Computer Science, Linguistics and Biology Meet, pp. 329-342, Kluwer, Dordrecht (2001).
3. Ehrenfeucht, A., Petre, I., Prescott, D. M., and Rozenberg, G., String and graph reduction systems for gene assembly in ciliates, Math. Struct. Comput. Sci., 12:113-134 (2002).
4. Ehrenfeucht, A., Petre, I., Prescott, D. M., and Rozenberg, G., Circular gene assembly in ciliates, manuscript (2001).
5. Ehrenfeucht, A., Prescott, D. M., and Rozenberg, G., Computational aspects of gene (un)scrambling in ciliates. In L. Landweber, E. Winfree (eds.), Evolution as Computation, pp. 45-86, Springer-Verlag, Berlin (2001).
6. Landweber, L.F., and Kari, L., The evolution of cellular computing: nature's solution to a computational problem. Proceedings of the 4th DIMACS Meeting on DNA Based Computers, Philadelphia, PA, pp. 3-15 (1998).
7. Land weber, L.F., and Kari, L., Universal molecular computation in ciliates. In Evolution as Computation, Landweber, L., Winfree, E. (eds.), Springer-Verlag, Berlin (2002).
8. Pǎun, G., Rozenberg, G., and Salomaa, A., DNA Computing, Springer-Verlag, Berlin (1998).
9. Prescott, D.M., Cutting, splicing, reordering, and elimination of DNA sequences in Hypotrichous ciliates, BioEssays, 14(5):317-324 (1992).
10. Prescott, D.M., The unusual organization and processing of genomic DNA in Hypotrichous ciliates, Trends Genet. 8:439-445 (1992).
11. Prescott, D.M., and DuBois, M., Internal eliminated segments (IESs) of Oxytrichidae, J. Eukariot. Microbiol., 43:432-441 (1996).
12. Prescott, D.M., Ehrenfeucht, A., and Rozenberg, G., Molecular operations for DNA processing in Hypotrichous ciliates, European J. Protistology, 37:241-260 (2001).