The identification and analysis of the sequences that allow the detection of Allium cepa chromosomes by GISH in the allodiploid A. wakegi

Chromosoma

Volumn 111, Issue 3, 2002, Pages 184-191

  Shibata, Fukashi ^a   Hizume, Masahiro ^a  

^a EHIME UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA;

ALLIUM WAKEGI; ARTICLE; CHROMOSOME; CHROMOSOME ANALYSIS; CHROMOSOME ARM; CHROMOSOME IDENTIFICATION; CLONE; FLUORESCENCE IN SITU HYBRIDIZATION; GARLIC; GENE ISOLATION; GENE SEQUENCE; GENETIC VARIABILITY; GENOME; GENOMIC IN SITU HYBRIDIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; ONION; QUALITATIVE ANALYSIS; QUANTITATIVE ANALYSIS; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; WELSH ONION;

ALLIUM; ALLIUM CEPA; ALLIUM FISTULOSUM; ALLIUM WAKEGI;

EID: 0036765397     PISSN: 00095915     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00412-002-0197-1     Document Type: Article

References (26)

1. Barnes SR, James AM, Jamieson G (1985) The organization, nucleotide sequence, and chromosomal distribution of a satellite DNA from Allium cepa. Chromosoma 92:185-192
2. Bennett MD, Smith JB (1976) Nuclear DNA amount in angiosperms. Philos Trans R Soc Lond B Biol Sci 274:227-274
3. Flavell RB (1986) Repetitive DNA and chromosome evolution in plants. Philos Trans R Soc Lond B Biol Sci 312:227-242
4. Flavell RB, Bennett MD, Smith JB, Smith DB (1974) Genome size and proportion of repeated nucleotide sequence DNA in plants. Biochem Genet 12:257-269
5. Frello S, Heslop-Harrison JS (2000) Repetitive DNA sequences in Crocus vernus Hill (Iridaceae): The genomic organization and distribution of dispersed elements in the genus Crocus and its allies. Genome 43:902-909
6. Friesen N, Fritsch R, Bachmann K (1997) Hybrid origin of some ornamentals of Allium subgenus Melanocrommyum verified with GISH and RAPD. Theor Appl Genet 95:1229-1238
7. Gerlach WL, Bedbrook JR (1979) Cloning and characterization of ribosomal RNA genes from wheat and barley. Nucleic Acids Res 7:1869-1885
8. Hanelt P, Schulze-Motel J, Fritsch R, Kruse J, Mass HI, Ohle H, Pistrick K (1992) Infrageneric grouping of Allium: The Getersleben approach. In: Hanelt P, Hammer K, Knuppfer H (eds) The Genus Allium: Taxonomic Problems and Genetic Resources. IPK, Getersleben, Germany, pp 107-123
9. Hizume M (1994) Allodiploid nature of Allium wakegi Araki revealed by genomic in situ hybridization and localization of 5S and 18S rDNA. Jpn J Genet 69:407-415
10. Irifune K, Hirai K, Zheng J, Tanaka R, Morikawa H (1995) Nucleotide sequence of a highly repeated DNA sequence and its chromosomal localization in Allium fistulosum. Theor Appl Genet 90:312-316
11. Khrustaleva LI, Kik C (2000) Introgression of Allium fistulosum into A. cepa mediated by A. roylei. Theor Appl Genet 100:17-26
12. Loiero M, Durante M, Tagliasacchi AM, Avanzi S (1982) Two patterns of labelling by tritiated highly repetitive DNA in metaphase chromosomes of Allium cepa. Cytobios 34:15-24
13. Mes THM, Fitsch RM, Pollner S, Bachmann (1989) Evolution of chloroplast genome and polymorphic ITS regions Allium subg. Melanocrommyum. Genome 42:237-247
14. Murray HG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8:4321-4325
15. 1 hybrids. Plant J 2:695-704
16. Pearce SR, Pich U, Harrison G, Flavell A, Heslop-Harrison JS, Schubert I, Kumar A (1996) The Ty1-copia group retrotransposons of Allium cepa are distributed throughout the chromosomes but are enriched in the terminal heterochromatin. Chromosome Res 4:357-364
17. Peterka H, Budahn H, Schrader O (1997) Interspecific hybrids between onion (Allium cepa L.) with S-cytoplasm and leek (Allium ampeloprasum L.). Theor Appl Genet 94:383-389
18. Pich U, Schubert I (1998) Terminal heterochromatin and alternative telomeric sequences in Allium cepa. Chromosome Res 6:315-321
19. Pich U, Fritsch R, Schubert I (1996a) Closely related Allium species (Alliaceae) share a very similar satellite sequence. Plant Syst Evol 202:255-264
20. Pich U, Fuchs J, Schubert I (1996b) How do Alliaceae stabilize their chromosome ends in the absence of TTTAGGG sequences? Chromosome Res 4:207-213
21. Schmidt T, Heslop-Harrison JS (1998) Genomes, genes and junk: The large-scale organization of plant chromosomes. Trends Plant Sci 3:1360-1385
22. Shibata F, Hizume M, Kuroki Y (1999) Chromosome painting of Y chromosomes and isolation of a Y chromosome-specific repetitive sequence in the dioecious plant Rumex acetosa. Chromosoma 108:266-270
23. Shibata F, Hizume M, Kuroki Y (2000) Differentiation and the polymorphic nature of the Y chromosomes revealed by repetitive sequences in the dioecious plant, Rumex acetosa. Chromosome Res 8:229-236
24. Shigyo M, Imamura K, Iino M, Yamashita K, Tashiro Y (1998) Identification of alien chromosomes in a series of Allium fistulosum-A. cepa monosomic addition lines by mean of genomic in situ hybridization. Genes Genet Syst 73:311-315
25. Suzuki G, Ura A, Saito N, Do GS, Seo BB, Yamamoto M, Mukai Y (2001) BAC FISH analysis in Allium cepa. Genes Genet Syst 76:251-255
26. Telenius H, Carter NP, Bebb C, Nordenskjold M, Ponder BAJ, Tunnacliffe A (1992) Degenerate oligonucleotide-primed PCR: General amplification of target DNA by a single degenerate primer. Genomics 13:718-725