Translational fidelity, protein oxidation, and senescence: Lessons from bacteria

Ageing Research Reviews

Volumn 1, Issue 4, 2002, Pages 693-703

  Nyström, Thomas ^a  

^a UNIVERSITY OF GOTHENBURG   (Sweden)

Author keywords

Escherichia coli; Oxidative stress; Protein carbonylation; Translational fidelity

Indexed keywords

CHAPERONE; ELONGATION FACTOR; HEAT SHOCK PROTEIN; HEAT SHOCK PROTEIN 70; HISTONE; STRESS PROTEIN A; UNCLASSIFIED DRUG; BACTERIAL PROTEIN;

AGING; CITRIC ACID CYCLE; CONTROLLED STUDY; ESCHERICHIA COLI; GROWTH DISORDER; MACROMOLECULE; NONHUMAN; OXIDATION; OXIDATIVE STRESS; PROTEIN FOLDING; PROTEIN MODIFICATION; PROTEIN TARGETING; REVIEW; RNA TRANSLATION; SENESCENCE; ANIMAL; GENETICS; GROWTH, DEVELOPMENT AND AGING; HUMAN; METABOLISM; OXIDATION REDUCTION REACTION; PHYSIOLOGY; PROTEIN SYNTHESIS;

ESCHERICHIA COLI; EUKARYOTA;

AGING; ANIMALS; BACTERIAL PROTEINS; ESCHERICHIA COLI; HUMANS; OXIDATION-REDUCTION; PROTEIN BIOSYNTHESIS;

EID: 0036725380     PISSN: 15681637     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1568-1637(02)00028-4     Document Type: Review

References (48)

1. 0 phase. J. Biol. Chem. 276:2001;35396-35404.
2. Ballesteros M., Fredriksson Å., Henriksson J., Nyström T. Bacterial senescence: protein oxidation in non-proliferating cells is dictated by the accuracy of the ribosomes. EMBO J. 18:2001;5280-5289.
3. Barak Z., Gallant J., Lindsley D., Kwieciszewki B., Heidel D. Enhanced ribosome frameshifting in stationary phase cells. J. Mol. Biol. 263:1996;140-148.
4. Beckman K.B., Ames B.N. The free radical theory of aging matures. Physiol. Rev. 78:1998;547-581.
5. Benov L., Fridovich I. A superoxide dismutase mimic protects sodA sodB Escherichia coli against aerobic heating and stationary-phase death. Arch. Biochem. Biophys. 322:1995;291-294.
6. Berlett B.S., Stadtman E.R. Protein oxidation in aging, disease, and oxidative stress. J. Biol. Chem. 272:1997;20313-20316.
7. Cabiscol E., Piulats E., Echave P., Herrero E., Ros J. Oxidative stress promotes specific protein damage in Saccharomyces cerevisiae. J. Biol. Chem. 275:2000;27393-27398.
8. Cherkasova V., Ayyadevara S., Egilmez N., Shmookler Reis R. Diverse Caenorhabditis elegans genes that are up-regulated in dauer larvae also show elevated transcript levels in long-lived, aged or starved adults. J. Mol. Biol. 14:2000;433-438.
9. Dukan S., Nyström T. Bacterial senescence: stasis results in increased and differential oxidation of cytoplasmic proteins leading to developmental induction of the heat shock regulon. Genes Dev. 12:1998;3431-3441.
10. Dukan S., Nyström T. Oxidative stress defence and deterioration of growth-arrested Escherichia coli cells. J. Biol. Chem. 274:1999;26027-26032.
11. Dukan S., Farewell A., Ballestreros M., Taddei F., Radman M., Nyström T. Proteins are oxidatively carbonylated in response to reduced transcriptional or translational fidelity. Proc. Natl. Acad. Sci. U.S.A. 97:2000;5746-5749.
12. Eisenstark A., Calcutt M.J., Becker-Hapak M., Ivanova A. Role of Escherichia coli rpoS and associated genes in defense against oxidative damage. Free Radic. Biol. Med. 21:1996;975-993.
13. Ericsson M., Hanstorp D., Hagberg P., Enger J., Nyström T. Sorting out bacterial viability with optical tweezers. J. Bacteriol. 182:2000;5551-5555.
14. Farewell A., Kvint K., Nyström T. Negative regulation by RpoS: a case of sigma factor competition. Mol. Microbiol. 29:1998;1039-1052.
15. Gallant J., Kurland C., Parker J., Holliday R., Rosenberger R. The error catastrophe theory of aging: point counterpoint. Exp. Gerontol. 32:1997;333-346.
16. Groat R.G., Schultz J.E., Zychlinsky E., Bockman A., Matin A. Starvation proteins in Escherichia coli: kinetics of synthesis and role in starvation survival. J. Bacteriol. 168:1986;486-493.
17. Harman D. Aging: a theory based on free radical and radiation chemistry. J. Gerontol. 2:1956;298-300.
18. Hengge-Aronis R. Survival of hunger and stress: the role of rpoS in early stationary phase gene regulation in E. coli. Cell. 72:1993;165-168.
19. Hengge-Aronis, R., 2000. The general stress response in Escherichia coli. In: Storz, G., Hengge-Aronis, R. (Eds.), Bacterial Stress Responses. ASM Press, Washington, DC, pp. 161-179.
20. 2 challenge in Escherichia coli. J. Bacteriol. 170:1988;3910-3914.
21. Ji L.L., Dillon D., Wu E. Alteration of antioxidant enzymes with aging in rat skeletal muscle and liver. Am. J. Physiol. 258:1990;918-923.
22. Jishage, M., Kvint, K., Shingler, V., Nyström, T, 2002. Regulation of sigma factor competition by the alarmone ppGpp. Genes Dev. 16, 1260-1270.
23. Johnson T.E., Cypser J., de Castro E., de Castro S., Henderson S., Murakami S., Rikke B., Tedesco P., Link C. Gerontogenes mediate health and longevity in nematodes through increasing resistance to environmental toxins and stressors. Exp. Gerontol. 35:2000;687-694.
24. Kirkwood T.B. Evolution of ageing. Nature. 24:1977;301-304.
25. Kolter R., Siegele D.A., Tormo A. The stationary phase of the bacterial life cycle. Annu. Rev. Microbiol. 47:1993;855-874.
26. Kowald A., Kirkwood T.B. Towards a network theory of ageing: a model combining the free radical theory and the protein error theory. J. Theor. Biol. 21:1994;493-508.
27. Kurland, C.G., Mikkola, R., 1993. The impact of nutritional state on the microevolution of ribosomes. In: Kjelleberg, S. (Ed.), Starvation in Bacteria. Plenum Press, New York, pp. 225-238.
28. Lange R., Hengge-Aronis R. Identification of a central regulator of stationary phase gene expression in Escherichia coli. Mol. Microbiol. 5:1991;49-59.
29. Larsen P.L. Aging and resistance to oxidative damage in Caenorhabditis elegans. Proc. Natl. Acad. Sci. U.S.A. 90:1993;8905-8909.
30. Matin A. The molecular basis of carbon-starvation-induced general resistance in Escherichia coli. Mol. Microbiol. 5:1991;3-10.
31. Notley-McRobb L., King T., Ferenci T. rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responses. J. Bacteriol. 184:2002;806-811.
32. Nyström T. The trials and tribulations of growth arrest. Trends Microbiol. 3:1995;131-136.
33. Nyström T. To be or not to be: the ultimate decision of the growth arrested bacterial cell. FEMS Microbiol. Rev. 21:1998;283-290.
34. Nyström T. Starvation, cessation of growth and bacterial aging. Curr. Opin. Microbiol. 2:1999;214-219.
35. Nyström T., Larsson C., Gustafsson L. Bacterial defense against aging: role of the Escherichia coli ArcA regulator in gene expression, readjusted energy flux, and survival during stasis. EMBO J. 15:1996;3219-3228.
36. O'Farrell P.H. The suppression of defective translation by ppGpp and its role in the stringent response. Cell. 14:1978;545-557.
37. Orgel L.E. The maintenance of the accuracy of protein synthesis and its relevance to ageing. Proc. Natl. Acad. Sci. U.S.A. 49:1963;517-521.
38. Orr W.C., Sohal R.S. Extension of life span by overexpression of superoxide dismutase and catalase in Drosophila melanogaster. Science. 263:1994;1128-1130.
39. Parker J., Pollard J.W., Friesen J.D., Stanners C.P. Stuttering: high-level mistranslation in animal and bacterial cells. Proc. Natl. Acad. Sci. U.S.A. 75:1978;1091-1095.
40. Parkes T.L., Elia A.J., Dickinson D., Hilliker A.J., Phillips J.P., Boulianne G.L. Extension of Drosophila life span by overexpression of human SOD1 in motorneurons. Nat. Genet. 19:1998;171-174.
41. Reeve C.A., Amy P.S., Matin A. Role of protein synthesis in the survival of carbon-starved Escherichia coli K-12. J. Bacteriol. 160:1984a;1041-1046.
42. Reeve C.A., Bokman A.T., Matin A. Role of protein degradation in the survival of carbon-starved Escherichia coli and Salmonella typhimurium. J. Bacteriol. 157:1984;758-763.
43. Sohal R.S., Agarwal S., Sohal B.H. Oxidative stress and aging in the Mongolian gerbil (Meriones unguiculatus). Mech. Ageing Dev. 81:1995;15-25.
44. Starke P.E., Oliver C.N., Stadtman E.R. Modification of hepatic proteins in rats exposed to high oxygen concentration. FASEB J. 1:1987;36-39.
45. Tamarit J., Cabiscol E., Ros J. Identification of the major oxidatively damaged proteins in Escherichia coli cells exposed to oxidative stress. J. Biol. Chem. 273:1998;3027-3032.
46. Yan L.J., Levine R.L., Sohal R.S. Oxidative damage during aging targets mitochondrial aconitase. Proc. Natl. Acad. Sci. U.S.A. 94:1997;11168-11172.
47. Yasuda K., Adachi H., Fujiwara Y., Ishii N. Protein carbonyl accumulation in aging dauer fromation-defective (daf) mutants of Caenorhabditis elegans. J. Gerontol. 54:1999;47-51.
48. Wenthzel A.M., Stancek M., Isaksson L.A. Growth phase dependent stop codon readthrough and shift of translation reading frame in Escherichia coli. FEBS Lett. 421:1998;237-242.