Identification and characterization of transcription factor IIIA from Schizosaccharomyces pombe

Nucleic Acids Research

Volumn 30, Issue 13, 2002, Pages 2772-2781

  Schulman, Deborah B ^a   Setzer, David R ^a  

^a CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; DEOXYRIBONUCLEASE I; FUNGAL PROTEIN; HISTIDINE; RNA 5S; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR IIIA; UNCLASSIFIED DRUG; ZINC; ZINC FINGER PROTEIN;

BINDING AFFINITY; BINDING SITE; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; GENETIC VARIABILITY; IN VITRO STUDY; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN FOLDING; PROTEIN STRUCTURE; REVIEW; RNA TRANSCRIPTION; SACCHAROMYCES CEREVISIAE; SCHIZOSACCHAROMYCES POMBE; SEQUENCE HOMOLOGY; VERTEBRATE;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE; SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE; STAPHYLOCOCCUS PHAGE 3A; VERTEBRATA;

EID: 0036640697     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkf385     Document Type: Review

References (59)

1. A control region in the center of the 5S RNA gene directs specific initiation of transcription: II. The 3′ border of the region
2. A control region in the center of the 5S RNA gene directs specific initiation of transcription: I. The 5′ border of the region
3. Transcription of class III genes: Formation of preinitiation complexes
4. Formation and stability of the 5 S RNA transcription complex
5. The RNA polymerase III transcription apparatus
6. Repetitive zinc-binding domains in the protein transcription factor IIIA from Xenopus oocytes
7. Proposed structure for the zinc-binding domains from transcription factor IIIA and related proteins
8. A specific transcription factor that can bind either the 5S RNA gene or 5S RNA
9. Role of TFIIIA zinc fingers in vivo: Analysis of single-finger function in developing Xenopus embryos
10. A feedback loop coupling 5 S rRNA synthesis to accumulation of a ribosomal protein
11. Cloning and expression analysis of a human cDNA homologous to Xenopus TFIIIA
12. cDNA cloning, DNA binding and evolution of mammalian transcription factor IIIA
13. Molecular cloning, characterization and chromosomal mapping of a novel human gene (GTF3A) that is highly homologous to Xenopus transcription factor IIIA. Cytogenet
14. Molecular biology of vertebrate transcription factor IIIA: Cloning and characterization of TFIIIA from channel catfish oocytes
15. Species variation in transcription factor IIIA
16. Sequence variation in transcription factor IIIA
17. Comparison of the sequence and structure of transcription factor IIIA from Bufo americanus and Rana pipiens
18. Molecular Evolution: A Phylogenetic Approach
19. 5S ribosomal RNA database
20. A position-dependent transcription-activating domain in TFIIIA
21. Structure of the gene for Xenopus transcription factor TFIIIA
22. The primary structure of transcription factor TFIIIA has 12 consecutive repeats
23. The deduced sequence of the transcription factor TFIIIA from Saccharomyces cerevisiae reveals extensive divergence from Xenopus TFIIIA
24. Genes encoding transcription factor IIIA and the RNA polymerase common subunit RPB6 are divergently transcribed in Saccharomyces cerevisiae
25. A hydrophobic segment within the 81-amino-acid domain of TFIIIA from Saccharomyces cerevisiae is essential for its transcription factor activity
26. Mapping regions of yeast transcription factor IIIA required for DNA binding, interaction with transcription factor IIIC and transcription activity
27. High yield purification of active transcription factor IIIA expressed in E. coli
28. The 5S RNA genes of Schizosaccharomyces pombe
29. A simple vector modification to facilitate oligonucleotide-directed mutagenesis
30. Measuring equilibrium and kinetic constants using gel retardation assays
31. The attractions of proteins for small molecules and ions
32. Specific initiation by RNA polymerase I in a whole-cell extract from yeast
33. Yeast suppressor mutations and transfer RNA processing
34. Activated levels of rRNA synthesis in fission yeast are driven by an intergenic rDNA region positioned over 2500 nucleotides upstream of the initiation site
35. Faithful in vitro transcription by fission yeast RNA polymerase III reveals unique alpha-amanitin sensitivity
36. The genome sequence of Schizosaccharomyces pombe
37. Variations of the C2H2 zinc finger motif in the yeast genome and classification of yeast zinc finger proteins
38. The genome sequence of Drosophila melanogaster
39. The function of individual zinc fingers in sequence-specific DNA recognition by transcription factor IIIA
40. Interaction of wild-type and truncated forms of transcription factor IIIA from Saccharomyces cerevisiae with the 5 S RNA gene
41. Structural and functional studies of Xenopus laevis transcription factor IIIA zinc finger mutants
42. Transcription termination by RNA polymerase III in fission yeast. A genetic and biochemically tractable model system
43. Formation of a rate-limiting intermediate in 5S RNA gene transcription
44. Multiple factors are required for the accurate transcription of purified genes by RNA polymerase III
45. Specific interaction of a purified transcription factor with an internal control region of 5S RNA genes
46. Multiple factors involved in the transcription of class III genes in Xenopus laevis
47. Genetic analysis of Xenopus transcription factor IIIA
48. Design and characterization of a ligand-binding metallopeptide
49. Molecular basis for specific recognition of both RNA and DNA by a zinc finger protein
50. Contribution of individual amino acids to the nucleic acid binding activities of the Xenopus zinc finger proteins TFIIIA and p43
51. Multiple states of protein-DNA interaction in the assembly of transcription complexes on Saccharomyces cerevisiae 5S ribosomal RNA genes
52. Topography of transcription factor complexes on the Saccharomyces cerevisiae 5 S RNA gene
53. Locations of contacts between individual zinc fingers of Xenopus laevis transcription factor IIIA and the internal control region of a 5S RNA gene
54. Definition of the binding sites of individual zinc fingers in the transcription factor IIIA-5S RNA gene complex
55. Relative contributions of the zinc fingers of transcription factor IIIA to the energetics of DNA binding
56. Structure of the TFIIIA-5 S DNA complex
57. Differing roles for zinc fingers in DNA recognition: Structure of a six-finger transcription factor IIIA complex
58. Comparison of the RNA polymerase III transcription machinery in Schizosaccharomyces pombe, Saccharomyces cerevisiae and human