Determination of transcription start site and analysis of promoter sequence, splice junction sites, Intron Sequence and Codon Usage Bias of Rat Liver-specific Organic Anion Transporter-1 (rlst-1/Oatp-4/Slc21a10) gene

Mitochondrial DNA

Volumn 13, Issue 2, 2002, Pages 103-107

  Choudhuri, Supratim ^a   Ogura, Kenichiro ^a,b   Klaassen, Curtis D ^c  

^a UNIVERSITY OF KANSAS SCHOOL OF MEDICINE   (United States)

^b TOKYO UNIVERSITY OF PHARMACY AND LIFE SCIENCES   (Japan)

^c NONE

Author keywords

[No Author keywords available]

Indexed keywords

ORGANIC ANION TRANSPORTER 2;

ANIMAL; ARTICLE; AT RICH SEQUENCE; DNA SEQUENCE; GENETICS; INTRON; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PROMOTER REGION; RAT; RNA SPLICING; TRANSCRIPTION INITIATION SITE;

ANIMALS; AT RICH SEQUENCE; BASE SEQUENCE; INTRONS; MOLECULAR SEQUENCE DATA; ORGANIC ANION TRANSPORT POLYPEPTIDE C; PROMOTER REGIONS (GENETICS); RATS; RNA SPLICE SITES; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION INITIATION SITE; ANIMAL; SUPPORT, U.S. GOV'T, P.H.S.;

RODENTIA;

EID: 0036528358     PISSN: 19401736     EISSN: 19401744     Source Type: Journal    
DOI: 10.1080/10425170290030015     Document Type: Article

References (14)

1. Cattori, V., Hagenbuch, B., Hagenbuch, N., Stieger, B., Ha, R., Winterhalter, K.E. and Meier, P.J. (2000) "Identification of organic anion transporting polypeptide 4 (Oatp4) as a major full-length isoform of the liver-specific transporter-1 (rlst-1) in rat liver", FEBS Lett. 474, 242-245.
2. Choudhuri, S., Ogura, K. and Klaassen, C.D. (2000) "Cloning of the full-length coding sequence of rat liver-specific organic anion transporter-1 (rlst-1) and a splice variant and partial characterization of the rat lst-1 gene", Biochem. Biophys. Res. Commun. 274, 79-86.
3. Choudhuri, S., Ogura, K. and Klaassen, C.D. (2001) "Cloning, expression, and ontogeny of mouse organic anion transporting polypeptide-5, a kidney-specific organic anion transporter", Biochem. Biophys. Res. Commun. 280, 92-98.
4. Geng, Y. and Johnson, L.F. (1993) "Lack of an initiator element is responsible for multiple transcriptional initiation sites of the TATA-less mouse thymidylate synthase promoter", Mol. Cell. Biol. 13, 4894-4903.
5. Graur, D. and Li, W.-H. (2000) Fundamentals of Molecular Evolution (Sinauer Associates, Sunderland), p. 481.
6. Kakyo, M., Unno, M., Tokui, T., Nakagomi, R., Nishio, T., Iwasashi, H., Nakai, D., Seki, M., Suzuki, M., Naitoh, T., Matsuno, S., Yawo, H. and Abe, T. (1999) "Molecular characterization and functional regulation of a novel rat liver-specific organic anion transporter rlst-1", Gastroenterology 117, 770-775.
7. Kaufmann, J., Verrijzer, C.P., Shao, J. and Smale, S.T. (1996) "CIF, an essential cofactor for TFIID-dependent initiator function", Genes Dev. 10, 873-886.
8. Levinson, G. and Gutman, G.A. (1987) "Slipped-strand mispairing: a major mechanism for DNA sequence evolution", Mol. Biol. Evol. 4, 203-221.
9. Nei, M. and Kumar, S. (2000) Molecular Evolution and Phylogenetics (Oxford University Press, Oxford), see also p. 15, p. 333.
10. Ogura, K., Choudhuri, S. and Klaassen, C.D. (2000) "Full-length cDNA cloning and genomic organization of mouse liverspecific organic anion transporter-1 (lst-1) and a splice variant and partial characterization of the rat lst-1 gene", Biochem. Biophys. Res. Commun. 272, 563-570.
11. Porter, T.D. (1995) "Correlation between codon usage, regional genomic nucleotide composition, and amino acid composition in the cytochrome P-450 superfamily", Biochem. Biophys. Acta 1261, 394-400.
12. Stockel, B., Konig, J., Nies, A., Cui, Y., Brom, M. and Keppler, D. (2000) "Characterization of the 50-flanking region of the human multidrug resistance protein 2 (MRP2) gene and its regulation in comparison with the human multidrug resistance protein 3 (MRP3) gene", Eur. J. Biochem. 267, 1347-1358.
13. Takada, T., Suzuki, H. and Sugiyama, Y. (2000) "Characterization of 50-flanking region of human MRP3", Biochem. Biophys. Res. Commun. 270, 728-732.
14. Verrijzer, C.P. and Tjian, R. (1996) "TAFs mediate transcriptional activation and promoter selectivity", Trends Biochem. Sci. 21, 338-342.