Phenotypic and genetic diversity of Erwinia carotovora ssp. carotovora strains from Asia

Journal of Phytopathology

Volumn 150, Issue 3, 2002, Pages 120-127

  Seo, S T ^a   Furuya, N ^a   Lim, C K ^b   Takanami, Y ^a   Tsuchiya, K ^c  

^a KYUSHU UNIVERSITY   (Japan)

^b Kangwon National University   (South Korea)

^c NATIONAL INSTITUTE FOR AGRO ENVIRONMENTAL SCIENCES   (Japan)

Author keywords

Erwinia carotovora ssp. carotovora; Pathogenic group; PCR; pel gene; Phenotypic characteristics; RFLP

Indexed keywords

GENETIC VARIATION; PATHOGEN; PHENOTYPE; POLYMERASE CHAIN REACTION;

ASIA;

ALLIUM CEPA; CUCUMIS SATIVUS; ERWINIA; LYCOPERSICON ESCULENTUM; MORUS (PLANT); PECTOBACTERIUM; PECTOBACTERIUM CAROTOVORUM; PROKARYOTA; SOLANUM TUBEROSUM;

EID: 0036521177     PISSN: 09311785     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1439-0434.2002.00722.x     Document Type: Article

References (28)

1. Alarcon, B., M. T. Gorris, M. Cambra, M. M. Lopez (1995): Serological characterization of potato isolates of Erwinia carotovora subsp. atroseptica and subsp. carotovora using polyclonal and monoclonal antibodies. J. Appl. Bacteriol. 79, 592-602.
2. Annie, G., S. Regine, A. Elisabeth, A. D. G. Patrick (1992): Erwinia carotovora subsp. odorifera subsp. nov., associated with odorous soft rot of chicory (Cichorium intybus L.). Int. J. Syst. Bacteriol. 42, 582-588.
3. Chatterjee, A., Y. Liu, A. K. Chatterjee (1995): Nucleotide sequence of pectate lyase structural gene, pel 1 of Erwinia carotovora subsp. atroseptica strain 71 and relationship of pel 1 with other pel genes of Erwinia species. Mol. Plant-Microbe Interact. 8, 92-95.
4. Cho, J. J. (1983): Soft rot of crisphead lettuce incited by Erwinia carotovora subsp. carotovora Hawaii. Phytopathol 73, 1206-1209.
5. Darrasse, A., S. Priou, A. Kotoujansky, Y. Bertheau (1994): PCR and restriction fragment length polymorphism of a pel gene as a tool to identify Erwinia carotovora in relation to potato diseases. Appl. Environ. Microbiol. 60, 1437-1443.
6. De Boer, S. H., D. A. Cuppels, A. Kelman (1978): Pectolytic Erwinia spp. in the root zone of potato plants in relation to infestation of daughter tubers. Phytopathology 68, 1784-1790.
7. De Boer, S. H., L. Verdonck, H. Vruggink, R. Harju, H. O. Bang, J. De Ley (1987): Serological and biochemical variation among potato strains of Erwinia carotovora subsp. atroseptica and their taxonomic relationship to other E. carotovora strains. J. Appl. Bacteriol. 63, 487-495.
8. De Boer, S. H., L. J. Ward (1995): PCR detection of Erwinia carotovora subsp. atroseptica associated with potato tissue. Phytopathology 85, 854-858.
9. Dye, D. W. (1969): A taxonomic study of the genus Erwinia II. The 'Carotovora' Group. N. Z. J. Sci. 12, 81-97.
10. Goto, M., K. Matsumoto (1987): Erwinia carotovora subsp. wasabiae subsp. nov. isolated from diseased rhizomes and fibrous roots of Japanese horseradish (Eutrema wasabi Maxim.). Int. J. Syst. Bacteriol. 37, 130-135.
11. Helias, V., A. L. Roux, Y. Bertheau, D. Andrivon, J. Gauthier, B. Jouan (1998): Characterization of Erwinia carotovora subspecies and detection of Erwinia carotovora subsp. atroseptica in potato plants, soil and water extracts with PCR-based methods. Eur. J. Plant Pathol. 104, 685-699.
12. Hinton, J. C. D., J. M. Sidebotham, D. R. Gill, G. P. C. Salmond (1989): Extracellular and periplasmic isoenzymes of pectate lyase from Erwinia carotovora subsp. carotovora belong to different gene families. Mol. Microbiol. 3, 1785-1795.
13. Karnjanarat, S., K. Tsuchiya, N. Matsuyama, S. Wakimoto (1987): Physiological, biochemical and pathological differentiation among strains of Erwinia carotovora isolated from Japan and Thailand. Ann. Phytopathol. Soc. Japan 53, 460-469.
14. Keane, P. J., A. Kerr, P. B. New (1970): Crown gall of stone fruit. II. Identification and nomenclature of Agrobacterium isolates. Aust. J. Biol. Sci. 23, 585-595.
15. AL, pp. 469-476. In: Krieg, N. R. and J. G. Holt (eds), Bergey's Manual of Systematic Bacteriology, Vol. 1. Williams & Wilkins Co, Baltimore.
16. Liao, C. H., T. D. Gaffney, S. P. Bradley, L. J. C. Wong (1996): Cloning of a pectate lyase gene from Xanthomonas campestris pv. malvacearum and comparison of its sequence relationship with pel genes of soft-rot Erwinia and Pseudomonas. Mol. Plant-Microbe Interact. 9, 14-21.
17. Nakagawa, T., M. Shimada, H. Mukai, K. Asada, I. Kato, K. Fujino, T. Sato (1994): Detection of alcohol-tolerant Hiochi bacteria by PCR. Appl. Environ. Microbiol. 60, 637-640.
18. Perombelon, M. C. M., A. Kelman (1980): Ecology of the soft rot erwinias. Ann. Rev. Phytopathol. 18, 361-387.
19. Sambrook, J., E. F. Fritsch, T. Maniatis (1989): In: Molecular Cloning: a Laboratory Manual, 2nd Edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N. Y., USA.
20. Schaad, N. W. (1980): Laboratory Guide for Identification of Plant Pathogenic Bacteria. Amer. Phytopath. Soc. Minn.
21. Seo, S. T., N. Furuya, C. K. Lim, K. Tsuchiya, Y. Takanami (2001): Varation of Erwinia carotovora subsp. carotovora isolated from Korea. J. Fac. Agr. Kyushu Univ. 45, 431-436.
22. Smith, C., J. A. Bartz (1990): Variation in the pathogenicity and aggressiveness of strains of Ecc isolated from different hosts. Plant Dis. 74, 505-509.
23. Sheath, P. H. A., R. R. Sokal (1973): Numerical taxonomy, Freeman, W. H. and Co., San Francisco.
24. Stanghellini, M. E., J. C. Meneley (1975): Identification of soft-rot Erwinia associated with blackleg of potato in Arizona. Phytopathology 65, 86-87.
25. Tanii, A. (1984): Studies on the blackleg disease of potato in Hokkaido. Hokkaido Pref. Agr. Exp. Sta. 45, 104.
26. Thomson, S. V., D. C. Hildebrand, M. N. Schroth (1981): Identification and nutritional differentiation of the erwinia sugar beet pathogen from members of Erwinia carotovora and Erwinia chrysanthemi. Phytopathology 71, 1037-1042.
27. Wells, J. M., H. E. Moline (1991): Differentiation of the soft rot Erwinias (the Carotovora group) by fatty acid composition. J. Phytopathol. 131, 22-32.
28. William, G. W., M. B. Susan, A. P. Date, J. L. David (1991): 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173, 697-703.