Identification and comparative analysis of the chloroplast α-subunit gene of DNA-dependent RNA polymerase from seven Euglena species

Nucleic Acids Research

Volumn 30, Issue 5, 2002, Pages 1247-1254

  Sheveleva, Elena V ^a   Giordani, Nicole V ^a   Hallick, Richard B ^a  

^a UNIVERSITY OF ARIZONA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHLOROPLAST RNA; DNA DIRECTED RNA POLYMERASE; GENE PRODUCT; RIBOSOME PROTEIN;

BACTERIUM; CARBOHYDRATE SYNTHESIS; CARBOXY TERMINAL SEQUENCE; CISTRON; CODON; CONTROLLED STUDY; ELECTRON TRANSPORT; EUGLENA; EUGLENA ANABAENA; EUGLENA GRACILIS; EUGLENA GRANULATA; EUGLENA LONGA; EUGLENA MYXOCYLINDRACEA; EUGLENA STELLATA; EUGLENA VIRIDIS; GENE CLUSTER; GENE ISOLATION; GENE LOCUS; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; GREEN ALGA; INTRON; MOLECULAR EVOLUTION; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHOTOSYNTHESIS; PHYLOGENY; PLANT; PLASTID; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; REVIEW; SPECIES DIFFERENCE;

AMINO ACID SEQUENCE; ANIMALS; BACTERIA; DNA, CHLOROPLAST; DNA-DIRECTED RNA POLYMERASES; EUGLENA; EUGLENA GRACILIS; EVOLUTION, MOLECULAR; GENES, PLANT; GENES, PROTOZOAN; GENOME, PLANT; INTRONS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEIN STRUCTURE, TERTIARY; RNA, CHLOROPLAST; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

ALGAE; ANABAENA; ASTASIA; BACTERIA (MICROORGANISMS); CHLOROPHYTA; EUGLENA; EUGLENA ANABAENA; EUGLENA GRACILIS; EUGLENA GRANULATA; EUGLENA LONGA; EUGLENA MYXOCYLINDRACEA; EUGLENA STELLATA; EUGLENA VIRIDIS; EUGLENIDA; EUKARYOTA; PROTOZOA;

EID: 0036493228     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/30.5.1247     Document Type: Review

References (39)

1. Evidence for two RNA polymerase activities in Euglena gracilis chloroplasts
2. Organellar RNA polymerases of higher plants
3. Targeted disruption of the plastid RNA polymerase genes rpoA, B and C1: Molecular biology, biochemistry and ultrastructure
4. Complete sequence of Euglena gracilis chloroplast DNA
5. Pfam 3.1: 1313 multiple alignments match the majority of proteins
6. Complete gene map of the plastid genome of the nonphotosynthetic euglenoid flagellate Astasia longa
7. Methods in Chloroplast Biology
8. Evidence for the late origin of introns in chloroplast genes from an evolutionary analysis of the genus Euglena
9. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
10. The neighbor-joining method: A new method for reconstructing phylogenetic trees
11. Domain organization of RNA polymerase alpha subunit: C-terminal 85 amino acids constitute a domain capable of dimerization and DNA binding
12. Structural map of the alpha subunit of Escherichia coli RNA polymerase: Structural domains identified by proteolytic cleavage
13. The Escherichia coli RNA polymerase alpha subunit linker: Length requirements for transcription activation at CRP-dependent promoteres
14. Structure of the Escherichia coli RNA polymerase alpha subunit amino-terminal domain
15. A small chloroplast-encoded protein as a novel architectural component of the light-harvesting antenna
16. The ycf 9 (orf 62) gene in the plant chloroplast genome encodes a hydrophobic protein of stromal thylakoid membranes
17. The chloroplast gene ycf9 encodes a photosystem II (PSII) core subunit, PsbZ, that participates in PSII supramolecular architecture
18. Functional map of the alpha subunit of Escherichia coli RNA polymerase: Two modes of transcription activation by positive factors
19. Functional map of the alpha subunit of Escherichia coli RNA polymerase. Deletion analysis of the amino-terminal assembly domain
20. Functional map of the alpha subunit of Escherichia coli RNA polymerase: Insertion analysis of the amino-terminal assembly domain
21. Functional map of the alpha subunit of Escherichia coli RNA polymerase: Amino acid substitution within the amino-terminal assembly domain
22. Bipartite functional map of the E. coli RNA polymerase alpha subunit: Involvement of the C-terminal region in transcription activation by cAMP-CRP
23. A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase
24. Solution structure of the activator contact domain of the RNA polymerase alpha subunit
25. DNA-binding determinants of the alpha subunit of RNA polymerase: Novel DNA-binding domain architecture
26. The C-terminal domain of the alpha subunit of Escherichia coli RNA polymerase is required for efficient rho-dependent transcription termination
27. Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: The existence of genes possibly involved in chloroplast division
28. Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA
29. An inactive open complex mediated by an UP element at Escherichia coli promoters
30. Protein-protein communication within the transcription apparatus
31. Transcription activation by catabolite activator protein (CAP)
32. Phylogenetic analysis of the Triticeae (Poaceae) based on rpoA sequence data
33. Ancestral chloroplast genome in Mesostigma viride reveals an early branch of green plant evolution
34. The plastid genome of the cryptophyte alga, Guillardia theta: Complete sequence and conserved synteny groups confirm its common ancestry with red algae
35. A maturase-encoding group III twintron is conserved in deeply rooted euglenoid species: Are group III introns the chicken or the egg?
36. Comparison of psbK operon organization and group III intron content in chloroplast genomes of 12 Euglenoid species
37. Origin and evolution of chloroplasts: Current status and future perspectives
38. Plastid chromosomes: Structure and evolution
39. Conserved gene clusters in the highly rearranged chloroplast genomes of Chlamydomonas moewsii and Chlamydomonas reinhardtii