Sequencing of 16S rDNA of Klebsiella: Taxonomic relations within the genus and to other Enterobacteriaceae

International Journal of Medical Microbiology

Volumn 292, Issue 7-8, 2003, Pages 495-503

  Boye, Kit ^a   Hansen, Dennis S ^a  

^a STATENS SERUM INSTITUT   (Denmark)

Author keywords

16S rDNA; Identification; Klebsiella; Phylogenetic relationship; Taxonomy

Indexed keywords

DNA 16S;

ARTICLE; BASE PAIRING; DNA DNA HYBRIDIZATION; DNA SEQUENCE; ENTEROBACTER AEROGENES; ENTEROBACTERIACEAE; GENUS; KLEBSIELLA; KLEBSIELLA ORNITHINOLYTICA; KLEBSIELLA OXYTOCA; KLEBSIELLA PLANTICOLA; KLEBSIELLA PNEUMONIAE; KLEBSIELLA TETRIGENA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; SUBSPECIES; TAXONOMY;

CALYMMATOBACTERIUM GRANULOMATIS; ENTEROBACTER AEROGENES; KLEBSIELLA; KLEBSIELLA MOBILIS; KLEBSIELLA ORNITHINOLYTICA; KLEBSIELLA OXYTOCA; KLEBSIELLA PLANTICOLA; KLEBSIELLA PNEUMONIAE; KLEBSIELLA TERRIGENA;

EID: 0036488816     PISSN: 14384221     EISSN: None     Source Type: Journal    
DOI: 10.1078/1438-4221-00228     Document Type: Article

References (36)

1. Bagley, S. T., Seidler, R. J., Brenner, D. J.: Klebsiella planticola sp. nov.: a new species of Enterobacteriaceae found primarily in non-clinical environments. Curr. Microbiol. 6, 105-109 (1981).
2. Bascomb, S., Lapage, S. P., Curtis, M. A., Willcox, W. R.: Numerical classification of the tribe Klebsiellae. J. Gen. Microbiol. 66, 279-295 (1971).
3. Brenner, D. J., Steigerwalt, A. G., Fanning, G. R.: Differentiation of Enterobacter aerogenes from Klebsiellae by deoxyribonucleic acid reassociation. Int. J. Syst. Bacteriol. 22, 193-200 (1972).
4. Brisse, S., Verhoef, J.: Phylogenetic diversity of Klebsiella pneumoniae and Klebsiella oxytoca clinical isolates revealed by randomly amplified polymorphic DNA, gyrA and parC genes sequencing and automated ribotyping. Int. J. Syst. Evol. Microbiol. 51, 915-924 (2001).
5. Brosius, J., Dull, T. J., Sleeter, D. D., Noller, H. F.: Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J. Mol. Biol. 148, 107-127 (1981).
6. Carter, J. S., Bowden, F. J., Bastian, I., Myers, G. M., Sriprakash, K. S., Kemp, D. J.: Phylogenetic evidence for reclassification of Calymmatobacter granulomatis as Klebsiella granulomatis comb. nov. Int. J. Syst. Bacteriol. 49, 1695-1700 (1999).
7. Clayton, R. A., Sutton, G., Hinkle, P. S., Bult, C., Fields, C.: Intraspecific variation in small-subunit rRNA sequences in GenBank: why single sequences may not adequately represent prokaryotic taxa. Int. J. Syst. Bacteriol. 45, 595-599 (1995).
8. Drancourt, M., Bollet, C., Carta, A., Rousselier, P.: Phylogenetic analyses of Klebsiella species delineate Klebsiella and Raoultella gen. nov., with description of Raoultella ornithinolytica comb. nov., Raoultella terrigena comb. nov., Raoultella planticola comb. nov. Int. J. Syst. Evol. Microbiol. 51, 925-932 (2001).
9. Farmer, J. J., Davis, B. R., Hickman-Brenner, F. W., McWhorter, A., Huntley-Carter, G. P., Asbury, M. A., Riddle, C., Wathen-Grady, H. G., Elias, C., Fanning, G. R.: Biochemical identification of new species and biotypes of Enterobacteriaceae isolated from clinical specimens. J. Clin. Microbiol. 21, 46-76 (1985).
10. Ferragut, C., Izard, D., Gavini, F., Kersters K., De Ley, J., Leclerc, H.: Klebsiella trevisanii: a new species from water and soil. Int. J. Syst. Bacteriol. 33, 133-142 (1983).
11. OXY-2. Antimicrob. Agents Chemother. 40, 454-459 (1996).
12. Fox, G. E., Wisotzkey, J. D., Jurtshuk, P.: How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42, 166-170 (1992).
13. Gavini, F., Leclerc, H., Lefebvre, E., Ferragut, C., Izard, D.: Etude taxonomique d entérobactéries appartenant ou apparentées au genre Klebsiella. Ann. Microbiol. (Inst. Pasteur) 128B, 45-59 (1977).
14. Gray, M. W., Sankoff, D., Cedergren, R.: On the evolutionary descent of organisms and organelles: a global phylogeny based on a highly conserved structural core in small subunit ribosomal RNA. Nucleic Acids Res. 12, 5837-5852 (1984).
15. Hedegaard, J., de Steffensen, S. A., Nørskov-Lauritsen, N., Mortensen, K. K., Sperling-Petersen, H. U.: Identification of Enterobacteriaceae by partial sequencing of the gene encoding translation factor 2. Int. J. Syst. Bacteriol. 49, 1531-1538 (1999).
16. Izard, D., Gavini, F., Trinel, P. A., Krubwa, F., Leclerc, H.: Contribution of DNA-DNA hybridization to the transfer of Enterobacter aerogenes to the genus Klebsiella as K. mobilis. Zbl. Bakt. Hyg. I. Abt. Orig. C 1, 257-263 (1980).
17. Izard, D., Ferragut, C., Gavini, F., Kersters, K., De Ley, J., Leclerc, H.: Klebsiella terrigena, a new species from soil and water. Int. J. Syst. Bacteriol. 31, 116-127(1981).
18. Jain, K., Radsak, K., Mannheim, W.: Differentiation of the oxytocum group from Klebsiella by deoxyribonucleic acid-deoxyribonucleic acid hybridization. Int. J. Syst. Bacteriol. 24, 402-407 (1974).
19. Lautrop, H.: Gelatin-liquefying Klebsiella strains (Bacterium oxytocum (Flügge)). Acta. Pathol. Microbiol. Scand. 39, 375-384 (1956).
20. Ludwig, W., Schleifer, K.-H.: Phylogeny of Bacteria beyond the 16S rRNA standard. ASM News 65, 752-757 (1999).
21. Lutticken, R., Korth, H., Pulverer, G.: Zur Differenzierung von Klebsiella pneumoniae variatio "oxytoca". Zbl. Bakt. Hyg. A 244, 470-473 (1979).
22. Martinez-Murcia, A. J., Benloch, S., Collins, M. D.: Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations. Int. J. Syst. Bacteriol. 42, 412-421 (1992).
23. Mollet, C., Drancourt, M., Raoult, R.: rpoB sequence analysis as a novel basis for bacterial identification. Mol. Microbiol. 26, 1005-1011 (1997).
24. Monnet, D., Freney, J., Brun, Y., Boeufgras, J.-M., Fleurette, J.: Difficulties in identifying Klebsiella strains of clinical origin. Zbl. Bakteriol. 274, 456-464 (1991).
25. Naemura, L. G., Bagley, S. T., Seidler, R. J., Kaper, J. B., Colwell, R. R.: Numerical taxonomy of Klebsiella pneumoniae isolated from clinical and nonclinical sources. Curr. Microbiol. 2, 175-180 (1979).
26. Nelson, K., Selander, R. K.: Intergeneric transfer and recombination of the 6-phophogluconate dehydrogenase gene (gnd) in enteric bacteria. Proc. Natl. Acad. Sci. USA 91, 10227-10231 (1994).
27. Noller, H. F., Nomura, M.: Ribosomes,. In: Escherichia coli and Salmonella typhimurium. Cellular and molecular biology (F. C. Neidhardt, J. L. Ingraham, K. Broks Low, B. Magasanik, M. Schaechter, H. E. Umbarger, eds., pp. 104-126. ASM-Press, Washington, D.C. 1987.
28. Ørskov, I.: Genus V. Klebsiella. In: Bergey's manual of systematic bacteriology (N. R. Krieg, J. G. Holt, eds.), pp. 461-465, 1st ed. Williams and Wilkins, Baltimore 1984.
29. Podschun, R., Ullmann, U.: Incidence of Klebsiella planticola among clinical Klebsiella isolates. Med. Microbiol. Lett. 3, 90-95 (1994).
30. Podschun, R., Ullmann, U.: Klebsiella spp. as nosocomial pathogens: epidemiology, taxonomy, typing methods and pathogenicity factors. Clin. Microbiol. Rev. 11, 589-603 (1998).
31. Roux, V., Raoult, D.: Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing. Res. Microbiol. 146, 385-396 (1995).
32. Sakazaki R., Tamura, K., Kosako, Y., Yoshizaki, E.: Klebsiella ornithinolytica sp. nov., formerly known as ornithine-positive Klebsiella oxytoca. Curt. Microbiol. 18, 201-206 (1989).
33. Spröer, C., Mendrock, U., Swiderski, J., Lang, E., Stackebrandt, E.: The phylogenetic position of Serratia, Buttiauxella and some other genera of the family Enterobacteriaceae. Int. J. Syst. Bacteriol. 49, 1433-1438 (1999).
34. Stackebrandt, E., Goebel, B. M.: Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in present species definition in bacteriology. Int. J. Syst. Bacteriol. 44, 846-849 (1994).
35. Swofford, D.L.: PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods). Version 4. Sinauer Associates, Sunderland, MA (1999).
36. Woese, C. R.: Bacterial evolution. Microbiol. Rev. 51, 221-271 (1987).