Surface plasmon resonance for measuring TBP-promoter interaction

Biochemical and Biophysical Research Communications

Volumn 298, Issue 5, 2002, Pages 625-631

  Conway de Macario, Everly ^a,b   Rudofsky, Ulrich H ^a   Macario, Alberto J L ^a,b  

^a WADSWORTH CENTER   (United States)

^b STATE UNIVERSITY OF NEW YORK   (United States)

Author keywords

Archaea; Association dissociation rates; BIACORE; grpE; hsp40(dnaJ); hsp70(dnaK); SA (streptavidin) Sensor Chip; Stress genes; Transcription initiation factors

Indexed keywords

HEAT SHOCK PROTEIN; HEAT SHOCK PROTEIN 40; HEAT SHOCK PROTEIN 70; PROTEIN GRPE; TATA BINDING PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; COMPARATIVE STUDY; EQUILIBRIUM CONSTANT; EQUIPMENT; METHANOSARCINA; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN ANALYSIS; PROTEIN DNA INTERACTION; SURFACE PLASMON RESONANCE;

ARCHAEAL PROTEINS; BACTERIAL PROTEINS; DNA, ARCHAEAL; ESCHERICHIA COLI PROTEINS; GENES, ARCHAEAL; HEAT-SHOCK PROTEINS; HSP40 HEAT-SHOCK PROTEINS; HSP70 HEAT-SHOCK PROTEINS; METHANOSARCINA; MUTATION; PROMOTER REGIONS (GENETICS); PROTEIN BINDING; SURFACE PLASMON RESONANCE; TATA-BOX BINDING PROTEIN;

ARCHAEA; METHANOSARCINA; METHANOSARCINA MAZEI;

EID: 0036435597     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-291X(02)02388-4     Document Type: Article

References (22)

1. A.J.L. Macario, M. Lange, B.K. Ahring, E. Conway de Macario, Stress genes and proteins in the Archaea, Microbiol. Mol. Biol. Rev. 63 (1999) 923-967.
2. A.J. Hickey, E. Conway de Macario, A.J.L. Macario, Transcription in the Archaea: Basal factors, regulation, and stress-gene expression, Crit. Rev. Biochem. Mol. Biol. 37 (2002) 199-258.
3. S.R. Albright, R. Tjian, TAFs revisited: More data reveal new twists and confirm old ideas, Gene 242 (2000) 1-13.
4. B. Lemon, R. Tjian, Orchestrated response: A symphony of transcription factors for gene control, Genes Dev. 14 (2000) 2551-2569.
5. B.F. Pugh, Control of gene expression through regulation of the TATA-binding protein, Gene 255 (2000) 1-14.
6. W. Hausner, J. Wettach, C. Hethke, M. Thomm, Two transcription factors related with the eucaryal transcription factors TATA-binding protein and transcription factor IIB direct promoter recognition by an archaeal RNA polymerase, J. Biol. Chem. 271 (1996) 30144-30148.
7. S.A. Qureshi, S.D. Bell, S.P. Jackson, Factor requirements for transcription in the archaeon Sulfolobus shibatae, EMBO J. 16 (1997) 2927-2936.
8. S.D. Bell, A.B. Brinkman, J. van der Oost, S.P. Jackson, The archaeal TFIIE α homologue facilitates transcription initiation by enhancing TATA-box recognition, EMBO Rep. 21 (2001) 133-138.
9. B.L. Hanzelka, T.J. Darcy, J.N. Reeve, TFE an archaeal transcription factor in Methanobacterium thermoautotrophicum related to eucaryal transcription factor TFIIE α, J. Bacteriol. 183 (2001) 1813-1816.
10. A. De Biase, A.J.L. Macario, E. Conway de Macario, Effect of heat stress on promoter binding by transcription factors in the cytosol of the archaeon Methanosarcina mazeii, Gene 282 (2002) 189-197.
11. N.S. Baliga, Y.A. Goo, W.V. Ng, L. Hood, C.J. Daniels, S. DasSarma, Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors? Mol. Microbiol. 36 (2000) 1184-1185.
12. J. Thomsen, A. De Biase, S. Kaczanowski, A.J.L. Macario, M. Thomm, P. Zielenkiewicz, R. MacColl, E. Conway de Macario, The basal transcription factors TBP and TFB from the mesophilic archaeon Methanosarcina mazeii: Structure and conformational changes upon interaction with stress-gene promoters, J. Mol. Biol. 309 (2001) 589-603.
13. F.M. Ausubel, R. Brent, E.R. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith, K. Struhl, Current Protocols in Molecular Biology, vol. 2, Wiley, New York, NY, 2001.
14. J. Sambrook, D.W. Russell, Molecular Cloning. A Laboratory Manual, Third Ed., Cold Spring Harbor Laboratory Press, Plainview, NY, 2001.
15. B.S. DeDecker, R. O'Brien, P.J. Fleming, J.H. Geiger, S.P. Jackson, P.B. Siegler, The crystal structure of a hyperthermophilic archaeal TATA-box binding protein, J. Mol. Biol. 264 (1996) 1072-1084.
16. K. Paal, P.A. Baeuerte, M. Lienhard Schmitz, Basal transcription factors TBP and TFIIB and the viral coactivator E1A 13S bind with distinct affinities and kinetics to the transactivation domain of NF-κB p65, Nucleic Acids Res. 25 (1997) 1050-1055.
17. T. Matsuda, M. Morikawa, M. Haruki, H. Higashibata, T. Imanaka, S. Kanaya, Isolation of TBP-interacting protein (TIP) from a hyperthermophilic archaeon that inhibits binding of TBP to TATA-DNA, FEBS Lett. 457 (1999) 38-42.
18. L. Nieba, S.E. Nieba-Axmann, A. Persson, M. Hamalainen, F. Edebratt, A. Hansson, J. Lindholm, K. Magnusson, A.F. Karlsson, A. Pluckthun, BIACORE analysis of histidine-tagged proteins using a chelating NTA sensor chip, Anal. Biochem. 252 (1997) 217-228.
19. H. Terenzi, I. Petropoulos, E. Ellouze, M. Takashshi, M.M. Zakin, Interaction of DNA binding domain of HNF-3α with its transferrin enhancer DNA specific target site, FEBS Lett. 369 (1995) 277-282.
20. A. Yamamoto, Y. Ando, K. Yoshioka, K. Saito, T. Tanabe, H. Shirakawa, M. Yoshida, Difference in affinity for DNA between HMG proteins 1 and 2 determined by surface plasmon resonance measurements, J. Biochem. 122 (1997) 586-594.
21. J.E. Galagan, C. Nusbaum, A. Roy, M.G. Endrizzi, P. Macdonald, W. FitzHugh, S. Calvo, R. Engels, S. Smirnov, D. Atnoor, A. Brown, N. Allen, J. Naylor, N. Stange-Thomann, K. DeArellano, R. Johnson, L. Linton, P. McEwan, K. McKernan, J. Talamas, A. Tirrell, W. Ye, A. Zimmer, R.D. Barber, I. Cann, D.E. Graham, D.A. Grahame, A.M. Guss, R. Hedderich, C. Ingram-Smith, H.C. Kuettner, J.A. Krzycki, J.A. Leigh, W. Li, J. Liu, B. Mukhopadhyay, J.N. Reeve, K. Smith, T.A. Springer, L.A. Umayam, O. White, R.H. White, E. Conway de Macario, J.G. Ferry, K.F. Jarrell, H. Jing, A.J.L. Macario, I. Paulsen, M. Pritchett, K.R. Sowers, R.V. Swanson, S.H. Zinder, E. Lander, W.W. Metcalf, B. Birren, The genome of Methanosarcina acetivorans reveals extensive metabolic and physiological diversity, Genome Res. 12 (2002) 532-542.
22. U. Deppenmeier, A. Johann, T. Hartsch, R. Merkl, R.A. Schmitz, R. Martinez-Arias, A. Henne, A. Wiezer, S. Baumer, C. Jacobi, H. Brueggemann, T. Lienard, A. Christmann, M. Boemeke, S. Steckel, A. Bhattacharyya, A. Lykidis, R. Overbeek, H.-P. Klenk, R.P. Gunsalus, H.J. Fritz, G. Gottschalk, The genome of Methanosarcina mazei: Evidence for lateral gene transfer between bacteria and archaea, J. Mol. Microbiol. Biotechnol. 4 (2002) 453-461.