Isolation of pathogen-induced Chinese cabbage genes by subtractive hybridization employing selective adaptor ligation

Biochemical and Biophysical Research Communications

Volumn 299, Issue 3, 2002, Pages 352-359

  Ryang, Seung Ho ^a   Chung, Sam Young ^a   Lee, Sung Hee ^a   Cha, Jae Soon ^a   Yong Kim, Hak ^a   Cho, Tae Ju ^a  

^a Chungbuk National University   (South Korea)

Author keywords

Plant defense; Pseudomonas syringae; Subtractive cloning

Indexed keywords

CHITINASE; CYTOCHROME P450; DOUBLE STRANDED DNA; THAUMATIN;

ACCURACY; ARTICLE; CHINESE CABBAGE; DNA HYBRIDIZATION; DNA SEQUENCE; GENE AMPLIFICATION; GENE ISOLATION; GENETIC CODE; NONHUMAN; NUCLEOTIDE SEQUENCE; PATHOGENESIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PSEUDOMONAS SYRINGAE; SEQUENCE HOMOLOGY; TOMATO;

BRASSICA RAPA; CLONING, MOLECULAR; DNA; GENE EXPRESSION REGULATION; GENES, PLANT; HYBRIDIZATION, GENETIC; MOLECULAR SEQUENCE DATA; NUCLEIC ACID AMPLIFICATION TECHNIQUES; OLIGONUCLEOTIDE PROBES; PLANT PROTEINS; PSEUDOMONAS;

BRASSICA OLERACEA VAR. CAPITATA; BRASSICA RAPA SUBSP. PEKINENSIS; LYCOPERSICON ESCULENTUM; PSEUDOMONAS; PSEUDOMONAS SYRINGAE; PSEUDOMONAS SYRINGAE PV. TOMATO;

EID: 0036434560     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-291X(02)02639-6     Document Type: Article

References (32)

1. C.G. Sagerstroem, B.I. Sun, H.L. Sive, Subtactive cloning: Past, present, and future, Annu. Rev. Biochem. 66 (1997) 751-783.
2. H.L. Sive, T. St. John, A simple subtractive hybridization technique employing photoactivatable biotin and phenol extraction, Nucleic Acids Res. 16 (1988) 10937-10943.
3. F.G. Barr, B.S. Emmanuel, Application of a subtractive hybridization technique involving photoactivatable biotin and organic extraction to solution hybridization analysis of genomic DNA, Anal. Biochem. 186 (1990) 369-373.
4. D. Barila, C. Murgia, F. Nobili, S. Gaetani, G. Perozzi, Subtractive hybridization cloning of novel genes differentially expressed during intestinal development, Eur. J. Biochem. 223 (1994) 701-709.
5. I. Wieland, G. Bolger, G. Asouline, M. Wigler, A method for difference cloning: Gene amplification following subtractive hybridization, Proc. Natl. Acad. Sci. USA 87 (1993) 2720-2724.
6. I.N. Hampson, L. Pope, G.J. Cowling, T.M. Dexter, Chemical cross-linking subtraction (CCLS): A new method for the generation of subtractive hybridization probes, Nucleic Acids Res. 20 (1992) 2899.
7. J. Zeng, R. Gorski, D. Hamer, Differential cDNA cloning by enzymatic degrading subtraction (EDS), Nucleic Acids Res. 22 (1994) 4381-4385.
8. M. Yang, A.J. Sytkowski, Cloning differentially expressed genes by linker capture subtraction, Anal. Biochem. 237 (1996) 109-114.
9. S. Lin, S.-Y. Ying, Differentially expressed genes in activin-induced apoptotic LNCaP cells, Biochem. Biophys. Res. Commun. 257 (1999) 187-192.
10. N. Lisitsyn, N. Lisitsyn, M. Wigler, Cloning the differences between two complex genomes, Science 259 (1993) 946-951.
11. L. Diatchenko, Y.-F.C. Lau, A.P. Campbell, A. Chenchik, F. Moqadam, B. Huang, S. Lukyanov, K. Lukyanov, N. Gurskaya, E.D. Sverdlov, P.D. Silbert, Suppression subtractive hybridization: A method for generating differentially regulated or tissue-specific cDNA probes and libraries, Proc. Natl. Acad. Sci. USA 93 (1996) 6025-6030.
12. H.-J. Min, S.-S. Park, T.-J. Cho, A simple and effcient subtractive cloning method, J. Biochem. Mol. Biol. 34 (2001) 59-65.
13. S. De Vries, H. Hoge, T. Bisseling, Isolation of total and polysomal RNA from plant tissues, in: S.B. Gelvin, R.A. Schilperoot (Eds.), Plant Molecular Biology, Kluwer Academic Publishers, Dordrecht, The Netherlands, 1988, pp. B6/1-B6/5.
14. K.E. Hammond-Kosak, J.D.G. Jones, Resistance gene-dependent plant defense responses, Plant Cell 8 (1996) 1773-1791.
15. E. Lam, N. Kato, M. Lawton, Programmed cell death, mitochondria and the plant hypersensitive response, Nature 411 (2001) 848-853.
16. C. Lamb, R.A. Dixon, The oxidative burst in plant disease resistance, Annu. Rev. Plant Physiol. Plant Mol. Biol. 48 (1997) 251-275.
17. M.E. Alvarez, R.I. Pennel, P.-J. Meijer, A. Ishikawa, R.A. Dixon, C. Lamb, Reactive oxygen intermediates mediate a systemic signal network in the establishment of plant immunity, Cell 92 (1998) 773-784.
18. J.M. McDowell, J.L. Dangl, Signal transduction in the plant immune response, Trends Biochem. Sci. 25 (2000) 79-82.
19. J.A. Ryals, U.H. Neuenschwander, M.G. Willits, A. Molina, H.Y. Steiner, M.D. Hunt, Systemic acquired resistance, Plant Cell 8 (1996) 1809-1819.
20. M.C. Whalen, R.W. Innes, A.F. Bent, B.J. Staskawicz, Identification of Pseudomonas syringae pathogens of Arabidopsis and a bacterial locus determining avirulence on both Arabidopsis and soybean, Plant Cell 3 (1991) 49-59.
21. C.M. Lee, Y.J. Lee, M.H. Lee, H.G. Nam, T.J. Cho, T.R. Hahn, M.J. Cho, U. Sohn, Large-scale analysis of expressed genes from the leaf of oilseed rape (Brassica napus L.), Plant Cell Rep. 17 (1998) 930-936.
22. J.Y. Lim, C.S. Shin, E.J. Chung, J.S. Kim, H.U. Kim, S.J. Oh, W.B. Choi, C.S. Ryou, J.B. Kim, M.S. Kwon, T.Y. Chung, S.I. Song, J.K. Kim, B.H. Nahm, Y.S. Hwang, M.Y. Eun, J.S. Lee, J.J. Cheong, Y.D. Choi, Analysis of expressed sequence tags from Brassica rapa L. ssp. pekinensis, Mol. Cells 10 (2000) 399-404.
23. S. Bak, H.L. Nielsen, B.A. Halkier, The presence of CYP79 homologues in glucosinolate-producing plants shows evolutionary conservation of the enzymes in the conversion of amino acid to aldoxime in the biosynthesis of cyanogenic glucosides and glucosinolates, Plant Mol. Biol. 38 (1998) 725-734.
24. C.H. Hansen, L.N.P. Du, C.E. Olsen, K.B. Axelsen, A.J. Hick, J.A. Pickett, B.A. Halkier, CYP83b1 is the oxime-metabolizing enzyme in the glucosinolate pathway in Arabidopsis, J. Biol. Chem. 276 (2001) 24790-24796.
25. A.E. Osbourne, Preformed antimicrobial compounds and plant defense against fungal attack, Plant Cell 8 (1996) 1821-1831.
26. G. Brader, E. Tas, E.T. Palva, Jasmonate-dependent induction of indole glucosinolates in Arabidopsis by culture filtrates of the nonspecific pathogen Erwinia carotovora, Plant Physiol. 126 (2001) 849-860.
27. S. Xiao, S. Ellwood, O. Calis, E. Patrick, T. Li, M. Coleman, J.G. Turner, Broad-spectrum mildew resistance in Arabidopsis thaliana by RPW8, Science 291 (2001) 118-120.
28. T.J. Cho, S.S. Park, A simulation of subtractive hybridization, Nucleic Acids Res. 26 (1998) 1440-1448.
29. R.B. Goldberg, G. Hoschek, J.C. Kamalay, Sequence complexity of nuclear and polysomal RNA in leaves of the tobacco plant, Cell 14(1978) 123-131.
30. B. Lewin, Units of transcription and translation: Sequence components of heterogeneous nuclear RNA and messenger RNA, Cell 4 (1975) 77-93.
31. G.H. Travis, J.G. Sutcliffe, Phenol emulsion-enhanced subtractive cDNA cloning: Isolation of low-abundance monkey cortex-specific mRNAs, Proc. Natl. Acad. Sci. USA 85 (1988) 1696-1700.
32. F.G. Barr, B.S. Emmanuel, Application of a subtractive hybridization technique involving photoactivatable biotin and organic extraction to solution hybridization analysis of genomic DNA, Anal. Biochem. 186 (1990) 369-373.