메뉴 건너뛰기




Volumn 34, Issue 5, 2002, Pages 537-555

Irreducibility and efficiency of ESIP to sample marker genotypes in large pedigrees with loops

Author keywords

Elston Stewart algorithm; Irreducibility; Iterative peeling; Metropolis Hastings

Indexed keywords

GENETIC MARKER; MARKOV CHAIN;

EID: 0036423246     PISSN: 0999193X     EISSN: None     Source Type: Journal    
DOI: 10.1051/gse:2002022     Document Type: Article
Times cited : (9)

References (34)
  • 1
    • 0026526717 scopus 로고
    • Compound regressive models for family data
    • Bonney G.E., Compound regressive models for family data, Hum. Hered. 42 (1992) 28-41.
    • (1992) Hum. Hered. , vol.42 , pp. 28-41
    • Bonney, G.E.1
  • 3
    • 0015183542 scopus 로고
    • A general model for the genetic analysis of pedigree data
    • Elston R.C., Stewart J., A general model for the genetic analysis of pedigree data, Hum. Hered. 21 (1971) 523-542.
    • (1971) Hum. Hered. , vol.21 , pp. 523-542
    • Elston, R.C.1    Stewart, J.2
  • 5
    • 0002257789 scopus 로고    scopus 로고
    • An algorithm to sample marker genotypes in a pedigree with loops
    • Section on Bayesian Statistical Science, Alexandria, VA
    • Fernández S.A., Fernando R.L., Carriquiry A.L., An algorithm to sample marker genotypes in a pedigree with loops, in: Proc. of the American Statistical Association, Section on Bayesian Statistical Science, Alexandria, VA, 1999, pp. 60-65.
    • (1999) Proc. of the American Statistical Association , pp. 60-65
    • Fernández, S.A.1    Fernando, R.L.2    Carriquiry, A.L.3
  • 7
    • 0028066555 scopus 로고
    • The finite polygenic mixed model: An alternative formulation for the mixed model of inheritance
    • Fernando R.L., Stricker C., Elston R.C., The finite polygenic mixed model: An alternative formulation for the mixed model of inheritance, Theor. Appl. Genet. 88 (1994) 573-580.
    • (1994) Theor. Appl. Genet. , vol.88 , pp. 573-580
    • Fernando, R.L.1    Stricker, C.2    Elston, R.C.3
  • 8
    • 84950437936 scopus 로고
    • Annealing Markov chain Monte Carlo with applications to ancestral inference
    • Geyer C.J., Thompson E.A., Annealing Markov chain Monte Carlo with applications to ancestral inference, J. Am. Star. Assoc 90 (1995) 909-920.
    • (1995) J. Am. Star. Assoc. , vol.90 , pp. 909-920
    • Geyer, C.J.1    Thompson, E.A.2
  • 9
    • 0026668039 scopus 로고
    • Carlo method for combined segregation and linkage analysis
    • Guo S.W., Thompson E.A., A Monte Carlo method for combined segregation and linkage analysis, Am. J. Hum. Genet. 51 (1992) 1111-1126.
    • (1992) Am. J. Hum. Genet. , vol.51 , pp. 1111-1126
    • Guo, S.W.1    Thompson, E.A.2    Monte, A.3
  • 10
    • 0019996201 scopus 로고
    • A mixed model approximation for large pedigrees
    • Hasstedt S.J., A mixed model approximation for large pedigrees, Comput. Biomed. Res. 15 (1982) 195-307.
    • (1982) Comput. Biomed. Res. , vol.15 , pp. 195-307
    • Hasstedt, S.J.1
  • 11
    • 0025909193 scopus 로고
    • A variance components/major locus likelihood approximation on quantitative data
    • Hasstedt S.J., A variance components/major locus likelihood approximation on quantitative data, Genet. Epidemiol. 8 (1991) 113-125.
    • (1991) Genet. Epidemiol. , vol.8 , pp. 113-125
    • Hasstedt, S.J.1
  • 12
    • 77956890234 scopus 로고
    • Monte Carlo sampling methods using Markov chains and their applications
    • Hastings W.K., Monte Carlo sampling methods using Markov chains and their applications, Biometrika 57 (1970) 97-109.
    • (1970) Biometrika , vol.57 , pp. 97-109
    • Hastings, W.K.1
  • 13
    • 0030833349 scopus 로고    scopus 로고
    • Markov chain Monte Carlo segregation and linkage analysis for oligogenic models
    • Heath S.C., Markov chain Monte Carlo segregation and linkage analysis for oligogenic models, Am. J. Hum. Genet. 61 (1997) 748-760.
    • (1997) Am. J. Hum. Genet. , vol.61 , pp. 748-760
    • Heath, S.C.1
  • 14
    • 0031961877 scopus 로고    scopus 로고
    • Generating consistent genotypic configurations for multi-allelic loci and large complex pedigrees
    • Heath S.C., Generating consistent genotypic configurations for multi-allelic loci and large complex pedigrees, Hum. Hered. 48 (1998) 1-11.
    • (1998) Hum. Hered. , vol.48 , pp. 1-11
    • Heath, S.C.1
  • 15
    • 0001013743 scopus 로고
    • Application of Gibbs sampling for inference in a mixed major gene-polygenic inheritance model in animal populations
    • Janss L.L.G., Thompson R., Van Arendonk J.A.M., Application of Gibbs sampling for inference in a mixed major gene-polygenic inheritance model in animal populations, Theor. Appl. Genet. 91 (1995) 1137-1147.
    • (1995) Theor. Appl. Genet. , vol.91 , pp. 1137-1147
    • Janss, L.L.G.1    Thompson, R.2    Van Arendonk, J.A.M.3
  • 16
    • 0033358743 scopus 로고    scopus 로고
    • Blocking Gibbs sampling for linkage analysis in large pedigrees with many loops
    • Jensen C.S., Kong A., Blocking Gibbs sampling for linkage analysis in large pedigrees with many loops, Am. J. Hum. Genet. 65 (1999) 885-901.
    • (1999) Am. J. Hum. Genet. , vol.65 , pp. 885-901
    • Jensen, C.S.1    Kong, A.2
  • 17
    • 0001022491 scopus 로고
    • Blocking Gibbs sampling in very large probabilistic expert systems
    • Jensen C.S., Kong A., Kjærulff U., Blocking Gibbs sampling in very large probabilistic expert systems, Int. J. Hum. Comp. Stud. 42 (1995) 647-66.
    • (1995) Int. J. Hum. Comp. Stud. , vol.42 , pp. 647-666
    • Jensen, C.S.1    Kong, A.2    Kjærulff, U.3
  • 18
    • 0021047816 scopus 로고
    • Extensions to pedigree analysis. V. Optimal calculation of Mendelian likelihoods
    • Lange K., Boehnke M., Extensions to pedigree analysis. V. Optimal calculation of Mendelian likelihoods, Hum. Hered. 33 (1983) 291-301.
    • (1983) Hum. Hered. , vol.33 , pp. 291-301
    • Lange, K.1    Boehnke, M.2
  • 19
    • 0023259678 scopus 로고
    • An algorithm for automatic genotype elimination
    • Lange K., Goradia T.M., An algorithm for automatic genotype elimination, Am. J. Hum. Genet. 40 (1987) 250-256.
    • (1987) Am. J. Hum. Genet. , vol.40 , pp. 250-256
    • Lange, K.1    Goradia, T.M.2
  • 20
    • 0011306022 scopus 로고
    • Comparison of four statistical methods for detection of a major gene in a progeny test design
    • LeRoy P., Elsen J.M., Knott S., Comparison of four statistical methods for detection of a major gene in a progeny test design, Genet. Sel. Evol. 21 (1989) 341-357.
    • (1989) Genet. Sel. Evol. , vol.21 , pp. 341-357
    • LeRoy, P.1    Elsen, J.M.2    Knott, S.3
  • 21
    • 0029029338 scopus 로고
    • A scheme for constructing an irreducible Markov chain for pedigree data
    • Lin S., A scheme for constructing an irreducible Markov chain for pedigree data, Biometrics 51 (1995) 318-322.
    • (1995) Biometrics , vol.51 , pp. 318-322
    • Lin, S.1
  • 22
    • 77957186854 scopus 로고
    • Achieving irreducibility of the Markov chain Monte Carlo method applied to pedigree data
    • Lin S., Thompson E., Wijsman E., Achieving irreducibility of the Markov chain Monte Carlo method applied to pedigree data, IMA J. Math. Appl. Med. Biol. 10 (1993) 1-17.
    • (1993) IMA J. Math. Appl. Med. Biol. , vol.10 , pp. 1-17
    • Lin, S.1    Thompson, E.2    Wijsman, E.3
  • 24
    • 0027205090 scopus 로고
    • On the irreducibility of a Markov Chain defined on a space of genotype configurations by a sampling scheme
    • Sheehan N., Thomas A., On the irreducibility of a Markov Chain defined on a space of genotype configurations by a sampling scheme, Biometrics 49 (1993) 163-175.
    • (1993) Biometrics , vol.49 , pp. 163-175
    • Sheehan, N.1    Thomas, A.2
  • 25
    • 0029945706 scopus 로고    scopus 로고
    • Descent graphs in pedigree analysis: Applications to haplotyping location scores, and marker-sharing statistics
    • Sobel E., Lange K., Descent graphs in pedigree analysis: Applications to haplotyping location scores, and marker-sharing statistics, Am. J. Hum. Genet. 58 (1996) 1323-1337.
    • (1996) Am. J. Hum. Genet. , vol.58 , pp. 1323-1337
    • Sobel, E.1    Lange, K.2
  • 28
    • 0028832848 scopus 로고    scopus 로고
    • Linkage analysis with an alternative formulation for the mixed model of inheritance: The finite polygenic mixed model
    • Stricker C., Fernando R.L., Elston R.C., Linkage analysis with an alternative formulation for the mixed model of inheritance: The finite polygenic mixed model, Genetics 141 (1996) 1651-1656.
    • (1996) Genetics , vol.141 , pp. 1651-1656
    • Stricker, C.1    Fernando, R.L.2    Elston, R.C.3
  • 29
    • 0002565451 scopus 로고
    • An algorithm to approximate the likelihood for pedigree data with loops by cutting
    • Stricker C., Fernando R.L., Eltson R.C., An algorithm to approximate the likelihood for pedigree data with loops by cutting, Theor. Appl. Genet. 91 (1995) 1054-1063.
    • (1995) Theor. Appl. Genet. , vol.91 , pp. 1054-1063
    • Stricker, C.1    Fernando, R.L.2    Eltson, R.C.3
  • 30
    • 77957185941 scopus 로고
    • Approximate computation of probability functions for pedigree analysis
    • Thomas A., Approximate computation of probability functions for pedigree analysis, IMJ J. Math. Appl. Med. Biol. 3 (1986) 157-166.
    • (1986) IMJ J. Math. Appl. Med. Biol. , vol.3 , pp. 157-166
    • Thomas, A.1
  • 31
    • 0026528757 scopus 로고
    • A Gibbs sampling approach to linkage analysis
    • Thomas D., Cortessis V., A Gibbs sampling approach to linkage analysis, Hum. Hered. 42 (1992) 63-76.
    • (1992) Hum. Hered. , vol.42 , pp. 63-76
    • Thomas, D.1    Cortessis, V.2
  • 32
    • 0002985981 scopus 로고
    • Monte Carlo estimation of multilocus autozygosity probabilities
    • Sall J., Lehman A. (Eds.), Interface Foundation of North America: fairfax, Station, VA
    • Thompson E.A., Monte Carlo estimation of multilocus autozygosity probabilities, in: Sall J., Lehman A. (Eds.), Proceedings of the 1994 Interface Conference, Interface Foundation of North America: fairfax, Station, VA, 1994, pp. 498-506.
    • (1994) Proceedings of the 1994 Interface Conference , pp. 498-506
    • Thompson, E.A.1
  • 33
    • 0029799785 scopus 로고    scopus 로고
    • The use of multiple markers in Bayesian methods for mapping quantitative trait loci
    • Uimari P., Thaller G., Hoeschele I., The use of multiple markers in Bayesian methods for mapping quantitative trait loci, Genetics 143 (1996) 1831-1842.
    • (1996) Genetics , vol.143 , pp. 1831-1842
    • Uimari, P.1    Thaller, G.2    Hoeschele, I.3
  • 34


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.