Comparative ecology of H2 cycling in sedimentary and phototrophic ecosystems

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 81, Issue 1-4, 2002, Pages 575-585

  Hoehler, Tori M ^a   Albert, Daniel B ^b   Alperin, Marc J ^b   Bebout, Brad M ^a   Martens, Christopher S ^b   Des Marais, David J ^a  

^a NASA AMES RESEARCH CENTER   (United States)

^b University of North Carolina at Chapel Hill   (United States)

Author keywords

Anoxic sediments; Hydrogen; Microbial mats

Indexed keywords

HYDROGEN; SULFATE; METHANE; SEA WATER;

ANOXIC CONDITIONS; HYDROGEN; MICROBIAL ACTIVITY; MICROBIAL MAT; NUTRIENT CYCLING; PHOTOAUTOTROPHY;

ARTICLE; BIOCHEMISTRY; CALCULATION; CONTROLLED STUDY; METHANOGENESIS; MEXICO; MICROBIAL MAT; MICROENVIRONMENT; NONHUMAN; PHOTOSENSITIVITY; PHOTOTROPISM; PREDICTION; PRESSURE MEASUREMENT; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REDUCTION; SEDIMENT; SEDIMENTATION; SENSITIVITY ANALYSIS; STEADY STATE; SYNECOLOGY; THERMODYNAMICS; UNITED STATES; BACTERIUM; COMPARATIVE STUDY; ECOLOGY; ECOSYSTEM; GRAM NEGATIVE ANAEROBIC BACTERIA; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MICROBIOLOGY; REVIEW;

MEXICO; UNITED STATES;

BACTERIA; ECOLOGY; ECOSYSTEM; GEOLOGIC SEDIMENTS; HYDROGEN; METHANE; SEAWATER; SULFUR-REDUCING BACTERIA;

EID: 0036419405     PISSN: 00036072     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1020517924466     Document Type: Article

References (70)

1. Alperin MJ, Blair NE, Albert DB, Hoehler TM & Martens CS (1992) Factors that control the carbon isotopic composition of methane produced in an anoxic marine sediment. Global Biogeochem. Cycles 6: 271-291.
2. Argano M & Schlegel HG (1992) The mesophilic hydrogen-oxidizing (knallgas) bacteria. In: Balows A, Trüper HG, Dworkin M, Harder W & Schleifer KH (Eds) The Prokaryotes (pp 344-384). Springer, New York.
3. Atkins PW (1990) Physical Chemistry. Oxford University Press, New York.
4. Balashova VV & Zavarzin GA (1979) Anaerobic reduction of ferric iron by hydrogen bacteria. Microbiology (Engl. Trans. Mikrobiologiya) 48: 635-639.
5. Barker HA (1981) Amino acid degradation by anaerobic bacteria. Annu. Rev. Biochem. 50: 23-40.
6. Biagini GA, Finley BJ & Lloyd D (1997) Evolution of the hydrogenosome. FEMS Microbiol. Lett. 155(2): 133-140.
7. Boetius A, Ravenschlag K, Schubert CJ, Rickert D, Widdel F, Gieseke A, Amann R, Jørgensen BB, Witte U & Pfannkuche O (2000) A marine microbial consortium apparently mediating anaerobic oxidation of methane. Nature 407: 623-626.
8. Boone DR & Bryant MP (1980) Propionate-degrading bacterium, Syntrophobacter wolinii, sp. nov. gen. nov., from methanogenic ecosystems. Appl. Environ. Microbiol. 40: 626-632.
9. Bryant MP, Wolin EA, Wolin MJ & Wolfe RS (1967) Methanobacillus omelianskii, a syntrophic association of two species of bacteria. Arch. Microbiol. 59: 20-31.
10. Canfield DE & DesMarais DJ (1993) Biogeochemical cycles of carbon, sulfur, and free oxygen in a microbial mat. Geochim. Cosmochim. Acta 57: 3971-3984.
11. Canuel EA (1992) Seasonal Variations in the sources and accumulation of organic matter in a coastal sediment. Ph.D., University of North Carolina.
12. Chanton JP, Martens CS & Kipphut GW (1983) Lead-210 sediment geochronology in a changing coastal environment. Geochim. Cosmochim. Acta 47: 1791-1804.
13. 4 production by Methanobacterium ruminantium on the fermentation of glucose and lactate by Selenomonas ruminantium. Appl. Environ. Microbiol. 34: 756-759.
14. Conrad R & Wetter B (1990) Influence of temperature on energetics of hydrogen metabolism in homoacetogenic, methanogenic, and other anaerobic bacteria. Arch. Microbiol. 155: 94-98.
15. 2-producing metabolic reactions in diverse methanogenic environments under in situ conditions. FEMS Microbiol. Ecol. 38: 353-360.
16. Conrad R, Lupton FS & Zeikus JG (1987) Hydrogen metabolism and sulfate-dependent inhibition of methanogenesis in a eutrophic lake sediment (Lake Mendota). FEMS Microbiol. Ecol. 45: 107-115.
17. Cord-Ruwisch R, Seitz H-J & Conrad R (1988) The capacity of hydrogenotrophic anaerobic bacteria to compete for traces of hydrogen depends on the redox potential of the terminal electron acceptor. Arch. Microbiol. 149: 350-357.
18. Crill PM & Martens CS (1987) Biogeochemical cycling in an organic-rich coastal marine basin, 6. Temporal and spatial variations in sulfate reduction rates. Geochim. Cosmochim. Acta 51: 1175-1186.
19. DesMarais DJ (1995) The biogeochemistry of hypersaline microbial mats. In: Jones JG (Ed) Advances in Microbial Ecology, Vol. 14. Plenum, New York.
20. Dolfing J (1988) Acetogenesis. In: Zehnder AJB (Ed) Biology of Anaerobic Microorganisms (pp 417-468). Wiley-Interscience, New York.
21. Ferry JG (1992) Biochemistry of methanogenesis. Crit. Rev. Biochem. Mol. Biol. 27: 473-503.
22. Ferry JG & Wolfe RS (1976) Anaerobic degradation of benzoate to methane by a microbial consortium. Arch. Microbiol. 107: 33-40.
23. Hinrichs K-U, Hayes JM, Sylva SP, Brewer PG & DeLong EF (1999) Methane-consuming archaebacteria in marine sediments. Nature 398: 802-805.
24. Hoehler TM, Alperin MJ, Albert DB & Martens CS (1994) Field and laboratory studies of methane oxidation in an anoxic marine sediment: evidence for a methanogen-sulfate reducer consortium. Global Biogeochem. Cycles 8(4): 451-463.
25. 2 concentrations in an anoxic marine sediment. Geochim. Cosmochim. Acta 62: 1745-1756.
26. Hoehler TM, Alperin MJ, Albert DB & Martens CS (2001a) Apparent minimum free energy requirements for methanogenic archaea and sulfate-reducing bacteria in an anoxic marine sediment. FEMS Microbiol. Ecol. 38: 33-41.
27. Hoehler TM, Bebout BM & DesMarais DJ (2001b) The role of microbial mats in the production of reduced gases on the early Earth. Nature 412: 324-327.
28. Houchins JP (1984) The physiology and biochemistry of hydrogen metabolism in cyanobacteria. Biochim. Biophys. Acta 768: 227-255.
29. 2. J. Bacteriol. 114: 1231-1240.
30. Klump JV & Martens CS (1989) The seasonality of nutrient regeneration in an organic-rich coastal sediment: kinetic modeling of changing pore-water nutrient and sulfate distributions. Limnol. Oceanogr. 34: 559-577.
31. Kondratieva EN, Pfennig N & Trüper HG (1992) The phototrophic Prokaryotes. In: Balows A, Trüper HG, Dworkin M, Harder W & Schleifer KH (Eds) The Prokaryotes (pp 312-330). Springer, New York.
32. Laanbroek HJ, Abee T & Voogd JL (1982) Alcohol conversions by Desulfobulbus propionicus Lindhorst in the presence and absence of sulfate and hydrogen. Arch. Microbiol. 133: 178-184.
33. 2. Appl. Environ. Microbiol. 54: 124-129.
34. Lovley DR & Goodwin S (1988) Hydrogen concentrations as an indicator of the terminal electron-accepting reactions in aquatic sediments. Geochim. Cosmochim. Acta 52: 2993-3003.
35. Lovley DR & Klug MJ (1983) Sulfate reducers can outcompete methanogens at freshwater sulfate concentrations. Appl. Environ. Microbiol. 45: 187-192.
36. Lovley DR, Dwyer DF & Klug MJ (1982) Kinetic analysis of competition between sulfate reducers and methanogens for hydrogen in sediments. Appl. Environ. Microbiol. 43: 1373-1379.
37. Lovley DR, Phillips EJP & Lonergan DJ (1989) Hydrogen and formate oxidation coupled to dissimilatory reduction of iron or manganese by Alteromonas putrefaciens. Appl. Environ. Microbiol. 55: 700-706.
38. Madigan MT, Martinko JM & Parker J (1996) Brock Biology of Microorganisms. Prentice Hall, Upper Saddle River, NJ.
39. Marrink SJ & Berendsen HJC (1996) Permeation process of small molecules across lipid membranes studied by molecular dynamics simulations. J. Phys. Chem. 100: 16729-16738.
40. Martens CS & Berner RA (1974) Methane production in the interstitial waters of sulfate depleted marine sediments. Science 185: 1167-1169.
41. Martens CS & Klump JV (1984) Biogeochemical cycling in an organic rich coastal marine basin: 4. An organic carbon budget for sediments dominated by sulfate reduction and methanogenesis. Geochim. Cosmochim. Acta 48: 1987-2004.
42. Martens CS, Haddad RI & Chanton JP (1992) Organic matter accumulation, remineralization and burial in an anoxic coastal sediment. In: Whelan JK & Farrington JW (Eds) Productivity, Accumulation, and Preservation of Organic Matter: Recent and Ancient Sediments (pp 82-98). Columbia University Press, New York.
43. Martin W & Muller M (1998) The hydrogen hypothesis for the first eukaryote. Nature 392(6671): 37-41.
44. McInerney MJ, Bryant MP & Pfennig N (1979) Anaerobic bacterium that degrades fatty acids in syntrophic association with methanogens. Arch. Microbiol. 122: 129-135.
45. Mortenson LE (1978) The role of dihydrogen and hydrogenase in nitrogen fixation. Biochimie 60: 219-223.
46. Mountfort DO & Bryant MP (1982) Isolation and characterization of an anaerobic syntrophic benzoate-degrading bacterium from sewage sludge. Arch. Microbiol. 133: 249-256.
47. Orphan VJ, House CH, Hinrichs KU, McKeegan KD & DeLong EF (2001) Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis. Science 293: 484-487.
48. Pancost RD, Damsté JSS, Lint SD, Van der Maarel MJEC & Gottschal JC (2000) Biomarker evidence for widespread anaerobic methane oxidation in Mediterranean sediments by a consortium of methanogenic archaea and bacteria. Appl. Environ. Microbiol. 66(3): 1126-1132.
49. 2 transfer between Methanosarcina barkeri and Desulfovibrio vulgaris during coculture metabolism of acetate or methanol. Appl. Environ. Microbiol. 50: 589-594.
50. Sansone FJ & Martens CS (1982) Volatile fatty acid cycling in organic-rich marine sediments. Geochim. Cosmochim. Acta 46: 1575-1589.
51. 2 production by Selenomonas ruminantium in the absence and presence of methanogenic bacteria. Appl. Microbiol. 29: 480-483.
52. Schink B (1988) Principles and limits of anaerobic degradation. In: Zehnder AJB (Ed) Biology of Anaerobic Microorganisms (pp 771-846). Wiley-Interscience, New York.
53. Schink B (1992) Syntrophism among Prokaryotes. In: Balows A, Trüper HG, Dworkin M, Harder W & Schleifer KH (Eds) The Prokaryotes (pp 276-299). Springer, New York.
54. 2-utilizing species. Appl. Environ. Microbiol. 42: 12-19.
55. Sørensen KB, Finster K & Ramsing NB (2001) Thermodynamic and kinetic requirements in anaerobic methane oxidizing consortia exclude hydrogen, acetate, and methanol as possible electron shuttles. Microb. Ecol. 42: 1-10.
56. Tewes FJ & Thauer RK (1980) Regulation of ATP-synthesis in glucose fermenting bacteria involved in interspecies hydrogen transfer. In: Gottschalk G, Pfennig N & Werner H (Eds) Anaerobes and Anaerobic Infections (pp 97-104). Gustav Fischer, Stuttgart.
57. Thamdrup B (2000) Bacterial manganese and iron reduction in aquatic sediments. In: Schink B (Ed) Advances in Microbial Ecology, Vol. 16 (pp 41-84). Kluwer Academic/Plenum, New York.
58. Tiedje JM (1988) Ecology of denitrification and assimilatory nitrate reduction to ammonium. In: Zehnder AJB (Ed) Biology of Anaerobic Microorganisms (pp 179-244). Wiley-Interscience, New York.
59. Valentine DL & Reeburgh WS (2000) New perspectives on anaerobic methane oxidation. Environ. Microbiol. 2(5): 477-484.
60. van Hoek AH, van Alen TA, Sprakel VS, Leunissen JA, Brigge T, D. VG & Hackstein JH (2000) Multiple acquisition of methanogenic archaeal symbionts by anaerobic ciliates. Mol. Biol. Evol. 17(2): 251-258.
61. Westermann P (1994) The effect of incubation temperature on steady-state concentration of hydrogen and volatile fatty acids during anaerobic degradation in slurries from wetland sediments. FEMS Microbiol. Ecol. 13: 295-302.
62. Widdel F (1988) Microbiology and ecology of sulfate- and sulfur-reducing bacteria. In: Zehnder AJB (Ed) Biology of Anaerobic Microorganisms (pp 469-586). Wiley-Interscience, New York.
63. 2-producing and methane-producing species. In: Schlegel HG, Gottschalk G & Pfennig N (Eds) Microbial Formation and Utilization of Gases. E. Goltze KG, Göttingen.
64. Wolin MJ & Miller TL (1982) Interspecies hydrogen transfer: 15 years later. ASM News 48: 561-565.
65. Wolin MJ, Wolin EA & Jacobs NJ (1961) Cytochrome-producing anaerobic vibrio, Vibrio succinogenes, Sp. N. J. Bacteriol. 81: 911-917.
66. Wit W-M, Hickey RF, Jain MK & Zeikus JG (1993) Energetics and regulations of formate and hydrogen metabolism by Methanobacterium formicicum. Arch. Microbiol. 159: 57-65.
67. Zehnder AJB & Brock TD (1979) Methane formation and methane oxidation by methanogenic bacteria. J. Bacteriol. 137: 420-432.
68. Zehnder AJB & Brock TD (1980) Anaerobic methane oxidation: occurrence and ecology. Appl. Environ. Microbiol. 39: 194-204.
69. Zehnder AJB & Stumm W (1988) Geochemistry and biogeochemistry of anaerobic habitats. In: Zehnder AJB (Ed) Biology of Anaerobic Microorganisms (pp 1-38). Wiley-Interscience, New York.
70. Zinder SH (1993) Physiological Ecology of Methanogens. In: Ferry JG (Ed) Methanogenesis (pp 128-206). Chapman & Hall, New York.