Preliminary crystallographic analysis of the bacteriophage P22 portal protein

Journal of Structural Biology

Volumn 139, Issue 1, 2002, Pages 46-54

  Cingolani, Gino ^a   Moore, Sean D ^b   Prevelige Jr , Peter E ^b   Johnson, John E ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b University of Alabama at Birmingham   (United States)

Author keywords

Connector; Crystallization; Diffraction; P22 bacteriophage; Portal protein; X ray crystallography

Indexed keywords

MONOMER; OLIGOMER; PROTEIN;

ARTICLE; BACTERIOPHAGE P22; CRYSTALLIZATION; CRYSTALLOGRAPHY; ESCHERICHIA COLI; MACROMOLECULE; MOLECULAR DYNAMICS; NONHUMAN; PERIODICITY; PRIORITY JOURNAL; PROTEIN PURIFICATION; STOICHIOMETRY; TEMPERATURE;

BACTERIOPHAGE P22; BACTERIOPHAGES; CATIONS; CRYOELECTRON MICROSCOPY; CRYSTALLOGRAPHY, X-RAY; DNA; ESCHERICHIA COLI; SYNCHROTRONS; TEMPERATURE; TERT-BUTYL ALCOHOL; VIRAL PROTEINS; VIRUS ASSEMBLY; X-RAYS;

ESCHERICHIA COLI; UNIDENTIFIED BACTERIOPHAGE;

EID: 0036418605     PISSN: 10478477     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1047-8477(02)00512-9     Document Type: Article

References (38)

1. Badasso, M.O., Leiman, P.G., Tao, Y., He, Y., Ohlendorf, D.H., Rossmann, M.G., Anderson, D., 2000. Purification, crystallization and initial X-ray analysis of the head-tail connector of bacteriophage phi29. Acta Crystallogr. D Biol. Crystallogr. 56, 1187-1190.
2. Bazinet, C., King, J., 1985. The DNA translocating vertex of dsDNA bacteriophage. Annu. Rev. Microbiol. 39, 109-129.
3. Bazinet, C., Benbasat, J., King, J., Carazo, J.M., Carrascosa, J.L., 1988. Purification and organization of the gene 1 portal protein required for phage P22 DNA packaging. Biochemistry 27, 1849-1856.
4. Carazo, J.M., Fujisawa, H., Nakasu, S., Carrascosa, J.L., 1986. Bacteriophage T3 gene 8 product oligomer structure. J. Ultrastruct. Mol. Struct. Res. 94, 105-113.
5. Casjens, S., Huang, W.M., 1982. Initiation of sequential packaging of bacteriophage P22 DNA. J. Mol. Biol. 157, 287-298.
6. Cerritelli, M.E., Studier, F.W., 1996. Purification and characterization of T7 head-tail connectors expressed from the cloned gene. J. Mol. Biol. 258, 299-307.
7. Collaborative Computational Project No. 4 (1994). The CCP4 suite: Programs for protein crystallography. Acta Crystallogr. D 50, 760-763.
8. Dodson, E.J., 2001. Using electron-microscopy images as a model for molecular replacement. Acta Crystallogr. D Biol. Crystallogr. 57, 1405-1409.
9. Driedonks, R.A., 1981. The quaternary structure of the T4 gene product 20 oligomer. Prog. Clin. Biol. Res. 64, 315-323.
10. Dube, P., Tavares, P., Lurz, R., vanHeel, M., 1993. The portal protein of bacteriophage SPP1: A DNA pump with 13-fold symmetry. EMBO J. 12, 1303-1309.
11. Franks, F., Reid, D.S., 1973. In: Franks, F. (Ed.), Thermodynamic Properties in Water. A Comprehensive Treatise: Water in Crystalline Hydrate: Aqueous Solution of Simple Nonelectrolytes. Plenum, New York, pp. 323-380.
12. Guasch, A., Parraga, A., Pous, J., Valpuesta, J.M., Carrascosa, J.L., Coll, M., 1998a. Purification, crystallization and preliminary X-ray diffraction studies of the bacteriophage phi29 connector particle. FEBS Lett. 430, 283-287.
13. Guasch, A., Pous, J., Parraga, A., Valpuesta, J.M., Carrascosa, J.L., Coll, M., 1998b. Crystallographic analysis reveals the 12-fold symmetry of the bacteriophage phi 29 connector particle. J. Mol. Biol. 281, 219-225.
14. Guo, P.X., Erickson, S., Anderson, D., 1987. A small viral RNA is required for in vitro packaging of bacteriophage phi29 DNA. Science 236, 690-694.
15. Hendrix, R.W., 1998. Bacteriophage DNA packaging: RNA gears in a DNA transport machine. Cell 94, 147-150.
16. Hope, I.A., Struhl, K., 1987. GCN4, a eukaryotic transcriptional activator protein, binds as a dimer to target DNA. EMBO J. 6, 2781-2784.
17. Jackson, E.N., Laski, F., Andres, C., 1982. Bacteriophage P22 mutants that alter the specificity of DNA packaging. J. Mol. Biol. 154, 551-563.
18. Jelesarov, I., Durr, E., Thomas, R.M., Bosshard, H.R., 1998. Salt effects on hydrophobic interaction and charge screening in the folding of a negatively charged peptide to a coiled coil (leucine zipper). Biochemistry 37, 7539-7550.
19. Jekow, P., Schaper, S., Gunther, D., Tavares, P., Hinrichs, W., 1998. Crystallization and preliminary X-ray crystallographic studies of the 13-fold symmetric portal protein of bacteriophage SPP1. Acta Crystallogr. D Biol. Crystallogr. 54, 1008-1011.
20. Juhala, R., Ford, M.E., Duda, R.L., Youlton, A., Hatfull, G.F., Hendrix, R.W., 2000. Genomic sequences of bacteriophages HK97 and HK022: Pervasive genetic mosaicism in the lambdoid bacteriophages. J. Mol. Biol. 299, 27-51.
21. Kochan, J., Carrascosa, J.L., Murialdo, H., 1984. Bacteriophage lambda preconnectors. Purification and structure. J. Mol. Biol. 174, 433-447.
22. Kocsis, E., Cerritelli, M.E., Trus, B.L., Cheng, N., Steven, A.C., 1995. Improved methods for determination of rotational symmetries in macromolecules. Ultramicroscopy 60, 219-228.
23. Lurz, R., Orlova, E.V., Gunther, D., Dube, P., Droge, A., Weise, F., van Heel, M., Tavares, P., 2001. Structural organisation of the head-to-tail interface of a bacterial virus. J. Mol. Biol. 310, 1027-1037.
24. Moore, S.D., Prevelige Jr., P.E., 2001. Structural transformations accompanying the assembly of bacteriophage P22 portal protein rings in vitro. J. Biol. Chem. 276, 6779-6788.
25. Orlova, E.V., Dube, P., Beckmann, E., Zemlin, F., Lurz, R., Trautner, T.A., Tavares, P., van Heel, M., 1999. Structure of the 13-fold symmetric portal protein of bacteriophage SPP1. Nat. Struct. Biol. 6, 842-846.
26. Otwinowski, Z., Minor, W., 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326.
27. Rishovd, S., Holzenburg, A., Johansen, B.V., Lindqvist, B.H., 1998. Bacteriophage P2 and P4 morphogenesis: Structure and function of the connector. Virology 25, 11-17.
28. Rodriguez-Casado, A., Moore, S.D., Prevelige Jr., P.E., Thomas, G.J., 2001. Structure of bacteriophage p22 portal protein in relation to assembly: Investigation by Raman spectroscopy. Biochemistry 40, 13583-13591.
29. Rossmann, M., Blow, D.M., 1962. The detection of sub-units within the crystallographic asymmetric unit. Acta Crystallogr. 15, 24-31.
30. Simpson, A.A., Leiman, P.G., Tao, Y., He, Y., Badasso, M.O., Jardine, P.J., Anderson, D.L., Rossmann, M.G., 2001. Structure determination of the head-tail connector of bacteriophage var-phi29. Acta Crystallogr. D Biol. Crystallogr. 57, 1260-1269.
31. Simpson, A.A., Tao, Y., Leiman, P.G., Badasso, M.O., He, Y., Jardine, P.J., Olson, N.H., Morais, M.C., Grimes, S., Anderson, D.L., Baker, T.S., Rossmann, M.G., 2000. Structure of the bacteriophage phi29 DNA packaging motor. Nature 408, 745-750.
32. Smith, D.E., Tans, S.J., Smith, S.B., Grimes, S., Anderson, D.L., Bustamante, C., 2001. The bacteriophage straight phi29 portal motor can package DNA against a large internal force. Nature 413, 748-752.
33. Tong, L., Rossmann, M.G., 1997. Rotation function calculations with GLRF program. Methods Enzymol. 276, 594-611.
34. Tsuprun, V., Anderson, D., Egelman, E.H., 1994. The bacteriophage phi 29 head-tail connector shows 13-fold symmetry in both hexagonally packed arrays and as single particles. Biophys. J. 66, 2139-2150.
35. Valle, M., Kremer, L., Martinez, A.C., Roncal, F., Valpuesta, J.M., Albar, J.P., Carrascosa, J.L., 1999. Domain architecture of the bacteriophage phi29 connector protein. J. Mol. Biol. 288, 899-909.
36. Valle, M., Valpuesta, J.M., Carrascosa, J.L., Tamayo, J., Garcia, R., 1996. The interaction of DNA with bacteriophage phi 29 connector: A study by AFM and TEM. J. Struct. Biol. 116, 390-398.
37. Valpuesta, J.M., Fernandez, J.J., Carazo, J.M., Carrascosa, J.L., 1999. The three-dimensional structure of a DNA translocating machine at 10 Å resolution. Struct. Fold. Des. 7, 289-296.
38. Valpuesta, J.M., Sousa, N., Barthelemy, I., Fernandez, J.J., Fujisawa, H., Ibarra, B., Carrascosa, J.L., 2000. Structural analysis of the bacteriophage T3 head-to-tail connector. J. Struct. Biol. 131, 146-155.