Molecular phylogenetics of emydine turtles: Taxonomic revision and the evolution of shell kinesis

Molecular Phylogenetics and Evolution

Volumn 22, Issue 3, 2002, Pages 388-398

  Feldman, Chris R ^a   Parham, James Ford ^b  

^a SAN FRANCISCO STATE UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Emydidae; Mitochondrial DNA; Molecular phylogenetics; Shell kinesis; Taxonomy; Turtles

Indexed keywords

CLEMMYS GUTTATA; CLEMMYS INSCULPTA; CLEMMYS MARMORATA; CLEMMYS MUHLENBERGII; EMYDIDAE; EMYDOIDEA BLANDINGII; EMYS MARMORATA; EMYS ORBICULARIS; TERRAPENE; TESTUDINES;

EID: 0036355538     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.2001.1070     Document Type: Article

References (72)

1. Mitochondrial DNA sequence divergence and phylogenetic relationships among eight chromosome races of the Sceloporus grammicus complex (Phrynostomatidae) in Central Mexico
2. Fossil turtles of the genus Terrapene in Florida
3. Mitochondrial DNA evolution at a turtle's pace: Evidence for low genetic variability and reduced microevolutionary rate in the Testudines
4. Descriptions of new species of reptiles collected by the U.S. exploring expedition under the command of Capt. Charles Wilkes, U.S.N.
5. Molecular systematics of the genus Clemmys and the intergeneric relationships of emydid turtles
6. Emydid shell kinesis: Biomechanics and evolution
7. A reevaluation of plastral kinesis in African turtles of the genus Pelusios
8. Branch support and tree stability
9. Partitioning and combining data in phylogenetic analysis
10. Phylogenetic relationships of emydine turtles
11. Review of the ecology and conservation of the bog turtle, Clemmys muhlenbergii
12. A molecular phylogeny of four endangered Madagascar tortoises based on mtDNA sequences
13. The stratigraphy and paleontology of the Chadron formation in the Big Badlands of South Dakota
14. Western New York bog turtles: Relicts of ephemeral islands or simply elusive?
15. Phylogeny as a central principle in taxonomy: Phylogenetic definitions and taxon names
16. Molecular phylogeny for marine turtles based on sequences of the ND4-leucine tRNA and control regions of mitochondrial DNA
17. Taxonomic congruence versus total evidence and amniote phylogeny inferred from fossils, molecules and morphology
18. Testing significance of incongruence
19. Evolutionary trees from DNA sequences: A maximum likelihood approach
20. Confidence limits on phylogenies: An approach using the bootstrap
21. A phylogeny of turtles
22. Statistical tests of models of DNA substitution
23. Branch and bound algorithms to determine minimal evolutionary trees
24. Cladistic analysis of batagurine turtles (Batagurinae: Emydidae: Testudinoidea): A preliminary result
25. Herpetofauna of the Egelhoff site (Miocene: Barstovian) of north-central Nebraska
26. A new species of Emydoidea (Reptilia: Testudines) from the late Barstovian (medial Miocene) of Cherry County, Nebraska
27. Emydoidea (Emydidae, Testudines) from the Barstovian (Miocene) of Nebraska
28. Testudines
29. A simple method for estimating evolutionary rate of base pair substitution through comparative studies of nucleotide sequence
30. Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics
31. Variations in mitochondrial tRNA gene organization of reptiles as a phylogenetic marker
32. Gene rearrangements in snake mitochondrial genomes: Highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster
33. Molecular systematics of map turtles (Graptemys): A comparison of mitochondrial restriction site versus sequence data
34. On the paraphyly of Malaclemys: A molecular genetic assessment
35. Natural history of the ornate box turtle, Terrapene ornata ornata Agassiz
36. Mitochondrial phylogeography of the European pond turtle, Emys orbicularis (Linnaeus 1758)
37. Revision of the African tortoises and turtles of the suborder Cryptodira
38. Homology in phylogenetic analysis: Alignment of transfer RNA genes and the phylogenetic position of snakes
39. Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome
40. Outgroup analysis using parsimony
41. The skeletal morphology of the Cretaceous cryptodiran turtle Adocus, and the relationships of the Trionychoidea
42. Relict species of the Chihuahuan Desert
43. Fossil box turtles (Terrapene) from Central Northern America, and box turtles of Eastern Mexico
44. Studies on the evolution of box turtles (genus Terrapene)
45. Terrapene of Western Mexico, with comments on the species group in the genus
46. Interordinal relationships of birds and other reptiles based on whole mitochondrial genomes
47. Variation in the phalangeal formulae in the turtle genus Terrapene
48. Phylogenetic relationships among the box turtles, genus Terrapene
49. Modeltest: Testing the model of DNA substitution
50. Versuch einer natürlichen eintheilung der amphibien
51. The general stochastic model of nucleotide substitution
52. Mitochondrial DNA-based phylogeography of North American rubber boas, Charina bottae (Serpentes: Boidae)
53. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase
54. DNA sequencing with chain-terminating inhibitors
55. Tests of turtle phylogeny: Molecular, morphological, and paleontological approaches
56. Phylogenetic inference
57. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes
58. Turtles and lizards from northern Mexico
59. Estimating patterns of nucleotide substitution
60. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
61. Maximum likelihood models for combined analyses of multiple sequence data
62. Phylogeography of the bushmaster (Lachesis muta: Viperidae): Implications for neotropical biogeography, systematics, and conservation