Functional studies of potential intrastrand triplex elements in the Escherichia coli genome

Journal of Molecular Biology

Volumn 318, Issue 2, 2002, Pages 373-386

  Hoyne, Paula Rodrigues ^a   Maher III, L James ^a  

^a MAYO GRADUATE SCHOOL   (United States)

Author keywords

Escherichia coli; Hairpin; Homopurine; Repetitive elements; Triplex DNA

Indexed keywords

DNA POLYMERASE; SIGNAL PEPTIDE; SINGLE STRANDED DNA BINDING PROTEIN;

ARTICLE; BACTERIAL GENOME; DNA RESPONSIVE ELEMENT; EPISOME; ESCHERICHIA COLI; GENE EXPRESSION; GENE REPLICATION; GENETIC CODE; GENOME ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN FOLDING; PROTEIN INTERACTION; TEMPERATURE; TRANSCRIPTION TERMINATION;

ESCHERICHIA COLI; HAEMOPHILUS; HAEMOPHILUS INFLUENZAE; SYNECHOCYSTIS; SYNECHOCYSTIS SP.;

EID: 0036301777     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-2836(02)00041-4     Document Type: Article

References (33)

1. H-DNA and related structures
2. Triplex DNA structures
3. Occurrence of oligopurine-oligopyrimidine tracts in eukaryotic and prokaryotic genes
4. Occurrence of potential cruciform and H-DNA forming sequences in genomic DNA
5. Single-strand DNA triple-helix formation
6. 3) triple helices
7. Formation of a stable triplex from a single DNA strand
8. Intramolecular triplex formation of the purine:purine:pyrimidine type
9. 12 sequences bridged by two hexaethylene glycol chains
10. Sugar conformations in intramolecular DNA triplexes determined by coupling constants obtained by automated simulation of P.COSY cross-peaks
11. Solution structure of a purine*purine:pyrimidine DNA triplex containing G*G:C and T*A:T triples
12. Energetics of a stable intramolecular DNA triple helix formation
13. Solution conformation of an intramolecular DNA triplex containing a non-nucleotide linker: Comparison with the DNA duplex
14. Circular dichorism and UV melting studies on formation of an intramolecular triplex containing parallel T*A:T and G*G:C triplets: Netropsin complexation with the triplex
15. Spectroscopic investigation of an intramolecular DNA triplex containing both G*G:C and T*A:T triads and its complex with netropsin
16. Solution structure of an intramolecular DNA triplex containing 5-(1-propynyl)-2′-deoxyuridine residues in the third strand
17. Stabilities of intrastrand pyrimidine motif DNA RNA triple helices
18. Suicidal nucleotide sequences for DNA polymerization
19. Mechanisms of triplex-caused polymerization arrest
20. Searching genomes for sequences with the potential to form intrastrand triple helices
21. Stability of triple helices containing RNA and DNA strands: Experimental and molecular modeling studies
22. Exclusion of RNA strands from a purine motif triple helix
23. Genetic analysis of prokaryotic and eukaryotic DNA-binding proteins in Escherichia coli
24. Escherichia coli single-stranded DNA-binding protein: Multiple DNA-binding modes and cooperativities
25. Binding of SSB and RecA Protein to DNA-containing stem loop structures: SSB ensures the polarity of RecA polymerization on single-stranded DNA
26. Escherichia coli single-strand binding protein forms multiple, distinct complexes with single-stranded DNA
27. Structure and function of the F factor and mechanism of conjugation
28. A mismatch bubble in double-stranded DNA suffices to direct precise transcription initiation by E. coli RNA polymerase
29. Peptide nucleic acid-DNA strand displacement loops as artificial transcription promoters
30. Replication fork propagation
31. Regulation of divergent transcription from the iron-responsive fepB-entC promoter-operator regions in Escherichia coli
32. Absorbance melting curves of RNA