Generation of kidney transcriptomes using serial analysis of gene expression

Experimental Nephrology

Volumn 10, Issue 2, 2002, Pages 82-92

  Schelling, Jeffrey R ^a   El Meanawy, M Ashraf ^a   Barathan, Shrinath ^a   Dodig, Tatiana ^a   Iyengar, Sudha K ^b   Sedor, John R ^a  

^a CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b CASE WESTERN RESERVE UNIVERSITY   (United States)

Author keywords

Genomic proteomic tools; Kidney transcriptomes; SAGE

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA;

ARTICLE; COMPUTER PROGRAM; CYTOLOGY; DATA BASE; DISEASE COURSE; GENE ACTIVITY; GENE CLUSTER; GENE EXPRESSION; GENE IDENTIFICATION; GENE INTERACTION; GENE LIBRARY; GENOME; GENOME ANALYSIS; HUMAN; HYPOTHESIS; KIDNEY DISEASE; NONHUMAN; PATHOGENESIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; RNA SEQUENCE;

EID: 0036217255     PISSN: 10187782     EISSN: None     Source Type: Journal    
DOI: 10.1159/000049903     Document Type: Article

References (44)

1. TGF-βin kidney fibrosis: A target for gene therapy
2. The hyperfiltration theory: A paradigm shift in nephrology
3. Genetic susceptibility to end-stage renal disease
4. Isolation of 10 differentially expressed cDNAs in p53-induced apoptosis: Activation of the vertebrate homologue of the drosophila seven in absentia gene
5. A novel seizure-induced synaptotagmin gene identified by differential display
6. Isolation of carp cDNA clones, representing developmentally-regulated genes, using a subtractive-hybridization strategy
7. Analysis of segmental renal gene expression by laser capture microdissection
8. Serial analysis of gene expression
9. Quantitative monitoring of gene expression patterns with a complementary DNA microarray
10. Use of serial analysis of gene expression (SAGE) technology
11. Open systems: Panoramic views of gene expression
12. SAGEmap: A public gene expression resource
13. Use of serial analysis of gene expression to generate kidney expression libraries
14. Molecular profiling of clinical tissue specimens: Feasibility and applications
15. Gene expression profiles of laser-captured adjacent neuronal subtypes
16. MicroSAGE: A modified procedure for serial analysis of gene expression in limited amounts of tissue
17. Serial microanalysis of renal transcriptomes
18. MiniSAGE: Gene expression profiling using serial analysis of gene expression from 1 μg total RNA
19. Enhanced concatemer cloning - A modification to the SAGE (Serial Analysis of Gene Expression) technique
20. Gene expression profiles in normal and cancer cells
21. Heterogeneity in polyadenylation cleavage sites in mammalian mRNA sequences: Implications for SAGE analysis
22. A quantitative evaluation of SAGE
23. Analysis of human transcriptomes
24. Correlation between protein and mRNA abundance in yeast
25. A modified serial analysis of gene expression that generates longer sequence tags by nonpalindromic cohesive linker ligation
26. Characterization of the yeast transcriptome
27. SAGE transcript profiles for p53-dependent growth regulation
28. The significance of digital gene expression profiles
29. Power SAGE: Comparing statistical tests for SAGE experiments
30. A relational schema for both array-based and SAGE gene expression experiments
31. A model for p53-induced apoptosis
32. Serial analysis of gene expression in non-small cell lung cancer
33. Combining serial analysis of gene expression and array technologies to identify genes differentially expressed in breast cancer
34. Identification and classification of p53-regulated genes
35. Inventory of high-abundance mRNAs in skeletal muscle of normal men
36. Serial analysis of gene expression as a tool to assess the human thyroid expression profile and to identify novel thyroidal genes
37. Serial analysis of gene expression in chronic hepatitis C and hepatocellular carcinoma
38. Isolation of genes identified in mouse renal proximal tubule by comparing different gene expression profiles
39. Oligosyndactyly: A lethal mutation in the mouse that results in mitotic arrest very early in development
40. The Os/+ mouse: A genetic animal model of reduced renal mass
41. Dissociation of glomerular hypertrophy, cell proliferation, and glomerulosclerosis in mouse strains heterozygous for a mutation (Os) which induces a 50% reduction in nephron number
42. A literature network of human genes for high-throughput analysis of gene expression
43. Expression analysis demonstrates the cell guidance signal neuropil-in 2b is reduced in sclerosis-prone ROP-Os/+ but not sclerosis-resistant C57BL/6-Os/+ mouse kidneys
44. Direct comparison of GeneChip and SAGE on the quantitative accuracy in transcript profiling analysis