MaxBench: Evaluation of sequence and structure comparison methods

Bioinformatics

Volumn 18, Issue 3, 2002, Pages 494-495

  Leplae, Raphael ^a   Hubbard, Tim J P ^a  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CLASSIFICATION; COMPARATIVE STUDY; CONTROLLED STUDY; DATA BASE; DEVICE; INTERNET; PRIORITY JOURNAL; PROTEIN DOMAIN; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS;

EID: 0036211768     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/18.3.494     Document Type: Article

References (15)

1. Do aligned sequences share the same fold?
2. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
3. Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships
4. The ASTRAL compendium for protein structure and sequence analysis
5. Structure-based evaluation of sequence comparison and fold recognition alignment accuracy
6. Evaluation of PSI-BLAST alignment accuracy in comparison to structural alignments
7. The FSSP database of structurally aligned protein fold families
8. Identification of related proteins on family, superfamily and fold level
9. Benchmarking PSI-BLAST in genome annotation
10. SCOP: A structural classification of proteins database for the investigation of sequences and structures
11. Improved tools for biological sequence comparison
12. Large-scale comparison of protein sequence alignment algorithms with structure alignments
13. Protein structure alignment by incremental Combinatorial Extension (CE) of the optimal path
14. Identification of common molecular subsequences
15. Sequence to structure alignment in comparative modeling using PrISM