Genotyping of axenic and non-axenic isolates of the genus Prochlorococcus and the OMF-'Synechococcus' clade by size, sequence analysis or RFLP of the Internal Transcribed Spacer of the ribosomal operon

Microbiology

Volumn 148, Issue 2, 2002, Pages 453-465

  Laloui, Wassila ^a   Palinska, Katarzyna A ^a   Rippka, Rosmarie ^a   Partensky, Frédéric ^a   Tandeau de Marsac, Nicole ^a   Herdman, Michael ^a   Iteman, Isabelle ^a  

^a INSTITUT PASTEUR   (France)

Author keywords

Coastal marine and freshwater 'synechococcus'; Cyanobacteria; Group specific ITS primers; Oceanic; Prochlococcus marinus subsp. pastoris PCC 9511T; Secondary structure fo the rrn operon

Indexed keywords

FRESH WATER; INTERNAL TRANSCRIBED SPACER; PRIMER RNA;

AMPLICON; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CLADISTICS; CONTROLLED STUDY; CYANOBACTERIUM; DNA BASE COMPOSITION; GENE AMPLIFICATION; GENE CLUSTER; GENE SEQUENCE; GENETIC CONSERVATION; GENOTYPE; GERMFREE ANIMAL; MARINE ENVIRONMENT; MOLECULAR SIZE; NONHUMAN; NUCLEOTIDE SEQUENCE; OCEANIC REGIONS; OPERON; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROCHLOROCOCCUS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RIBOSOME; RNA TRANSCRIPTION; SEQUENCE ANALYSIS; TRANSCRIPTION TERMINATION;

ANIMALIA; BACTERIA (MICROORGANISMS); CYANOBACTERIA; NEGIBACTERIA; PROCHLOROCOCCUS; PROCHLOROCOCCUS MARINUS; PROCHLOROCOCCUS MARINUS SUBSP. PASTORIS; PROCHLOROCOCCUS MARINUS SUBSP. PASTORIS STR. PCC 9511; PROKARYOTA; SYNECHOCOCCUS;

EID: 0036181772     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/00221287-148-2-453     Document Type: Article

References (52)

1. A molecular and phenotypic analysis of Nodularia (cyanobacteria) from the Baltic Sea
2. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli
3. Photosynthetic picoplankton community structure in the subtropical North Pacific Ocean near Hawaii (station ALOHA)
4. Oxygenic photosynthetic bacteria. Group I. Cyanobacteria. Preface
5. A novel free-living prochlorophyte abundant in the oceanic euphotic zone
6. Prochlorococcus marinus nov. gen. nov. sp.: An oxyphototrophic marine prokaryote containing divinyl chlorophyll a and b
7. Niche adaptation in ocean cyanobacteria
8. Genome size of cyanobacteria
9. Deoxyribonucleic acid base composition of cyanobacteria
10. Subsection I. (Formerly Chroococcales Wettstein 1924, emend. Rippka, Deruelles, Waterbury, Herdman and Stanier 1979)
11. Coexistence of phycoerythrin and a chlorophyll a/b antenna in a marine prokaryote
12. Phycoerythrins of the oxyphotobacterium Prochlorococcus marinus are associated to the thylakoid membranes and are encoded by a single large gene cluster
13. Detection of seven major evolutionary lineages in cyanobacteria based on the 16S rRNA gene sequence analysis with new sequences of five marine Synechococcus strains
14. Use of molecular tools for the study of genetic relationships of heterocystous cyanobacteria
15. Comparison of conserved structural and regulatory domains within divergent 16S rRNA-23S rRNA spacer sequences of cyanobacteria
16. Molecular phylogenetic relationship between strains of cyanobacterial picoplankton in Lake Biwa, Japan
17. Generic characters of the simplest cyanoprokaryotes Cyanobium, Cyanobacterium and Synechococcus
18. Vertical distribution of North Atlantic ultraphytoplankton: Analysis by flow cytometry and epifluorescence microscopy
19. Identification of cyanobacteria by polymorphisms of PCR-amplified ribosomal DNA spacer region
20. Comparative physiology of Synechococcus and Prochlorococcus: Influence of light and temperature on growth, pigments, fluorescence and absorptive properties
21. Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes
22. Prochlorococcus and Synechococcus: A comparative study of their optical properties in relation to their size and pigmentation
23. Specific amplification and restriction polymorphisms of the cyanobacterial rRNA operon spacer region
24. Spatial and temporal distributions of prochlorophyte picoplankton in the North Atlantic Ocean
25. Phylogenetic relationships between toxic and nontoxic strains of the genus Microcystis based on 16S to 23S internal transcribed spacer sequence
26. Cyanobacterial community structure as seen from RNA polymerase gene sequence analysis
27. Multiple evolutionary origins of prochlorophytes, the chlorophyll b-containing prokaryotes
28. Photoacclimation of Prochlorococcus sp. (Prochlorophyta) strains isolated from the North Atlantic and the Mediterranean Sea
29. Prochlorococcus, a key marine photosynthetic prokaryote
30. Presence of phycoerythrin in two strains of Prochlorococcus isolated from the sub-tropical North Pacific Ocean
31. Mechanisms of dominance: Coexistence of picocyanobacterial genotypes in a freshwater ecosystem
32. Pasteur Culture Collection of Cyanobacterial Strains in Axenic Culture
33. Generic assignments, strain histories and properties of pure cultures of cyanobacteria
34. 2-containing cyanobacterium (Oxyphotobacteria)
35. Phylogenetic analyses of Synechococcus strains (cyanobacteria) using sequences of 16S rDNA and part of the phycocyanin operon reveal multiple evolutionary lines and reflect phycobilin content
36. High degree of genetic variation in Prochlorococcus (Prochlorophyta) revealed by RFLP analysis
37. Seasonal appearance of Prochlorococcus in Suruga Bay, Japan, in 1992-1993
38. Vertical distributions and photosynthetic action spectra of two oceanic picophytoplankters, Prochlorococcus marinus and Synechococcus sp
39. Nucleotide sequence of the 16S-23S spacer region in the rrnA operon from a blue-green alga, Anacystis nidulans
40. Molecular systematics of oxygenic photosynthetic bacteria
41. Multiple evolutionary origins of prochlorophytes within the cyanobacterial radiation
42. Rapid diversification of marine picophytoplankton with dissimilar light-harvesting structures inferred from sequences of Prochlorococcus and Synechococcus (cyano-bacteria)
43. Order Chroococcales Wettstein 1924, emend. Rippka et al., 1979
44. Biological and ecological characterization of the marine unicellular cyanobacterium Synechococcus
45. Phenotypic and genotypic comparison of symbiotic and free-living cyanobacteria from a single field site
46. Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern North Atlantic ocean
47. Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides
48. Ala in the spacer between the 16S and 23S rRNA genes of a blue-green alga: Strong homology to chloroplast tRNA genes and tRNA genes of E. coli rrnD cluster
49. Molecular evolution and taxonomy of the cyanobacteria
50. Structure of the 16S ribosomal RNA of the thermophilic cyanobacterium Chlorogloeopsis HTF ('Mastigocladus laminosus HTF') strain PCC7518, and phylogenetic analysis
51. In situ hybridization of Prochlorococcus and Synechococcus (marine cyanobacteria) spp. with rRNA-targeted peptide nucleic acid probes