Differential evolutionary dynamics of duplicated paralogous Adh loci in allotetraploid cotton (Gossypium)

Molecular Biology and Evolution

Volumn 19, Issue 5, 2002, Pages 597-607

  Small, Randall L ^a   Wendelt, Jonathan F ^a  

^a UNIVERSITY OF TENNESSEE   (United States)

Author keywords

Adh; Alcohol dehydrogenase; Cotton; Gossypium; Nucleotide diversity; Polypoidy

Indexed keywords

ALCOHOL DEHYDROGENASE; DNA;

ARTICLE; COTTON; DNA SEQUENCE; EVOLUTION; GENE LOCUS; GENOME; NONHUMAN; PLANT; POLYMERASE CHAIN REACTION; POLYPLOIDY;

EMBRYOPHYTA; GOSSYPIUM; GOSSYPIUM HIRSUTUM; MALVACEAE;

EID: 0036097982     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a004119     Document Type: Article

References (57)

1. Nucleotide sequence variation at two genes of the phenylpropanoid pathway, the FAH1 and F3H genes, in Arabidopsis thaliana
2. The effect of hitch-hiking on neutral genealogies
3. Levels of naturally occuring DNA polymorphism correlate with recombination rates in Drosophila melanogaster
4. Bidirectional cytoplasmic and nuclear introgression in the New World cottons, Gossypium barbadense and G. hirsutum (Malvaceae)
5. Reevaluating the origin of domesticated cotton (Gossypium hirsutum; Malvaceae) using nuclear restriction fragment length polymorphisms (RFLPs)
6. Diversity and molecular evolution of the RPS2 resistance gene in Arabidopsis thaliana
7. The effect of deleterious mutations on neutral molecular variation
8. Sequence variation: Looking for effects of genetic linkage
9. Plant genetic diversity and the struggle to measure selection
10. The evolution of plant nuclear genes
11. TCS: A computer program to estimate gene genealogies
12. Simple methods for isolating homoeologous loci from allopolyploid genomes
13. Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes
14. Duplicated cared genes evolve independently after polyploid formation in cotton
15. Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons
16. Nucleotide sequence diversity at the alcohol dehydrogenase 1 locus in wild barley (Hordeum vulgare ssp. spontaneum): An evaluation of the background selection hypothesis
17. Why do genes have introns?
18. 'Touchdown' PCR to circumvent spurious priming during gene amplification
19. Molecular genetics of ecological diversification: Duplication and rapid evolution of toxin genes of the venomous gastropod Conus
20. Statistical tests of neutrality of mutations
21. Molecular clocks and nucleotide substitution rates in higher plants
22. Statistical properties of the number of recombination events in the history of a sample of DNA sequences
23. A test of neutral molecular evolution based on nucleotide data
24. Intragenic recombination in the Adh locus of the wild plant Arabidopsis thaliana
25. Nucleotide polymorphism in the acidic chitinase locus (ChiA) region of the wild plant Arabidopsis thaliana
26. DNA variation in the basic chitinase locus (ChiB) region of the wild plant Arabidopsis thaliana
27. Molecular trans-species polymorphism
28. Nucleotide variation at the CHALCONE ISOMERASE locus in Arabidopsis thaliana
29. Polyploid formation in cotton is not accompanied by rapid genomic changes
30. Genetic diversity in Leavenworthia populations with different inbreeding levels
31. Chromosomal location effects on gene sequence evolution in mammals
32. The signature of balancing selection: Fungal mating compatibility gene evolution
33. Adaptive protein evolution at the Adh locus in Drosophila
34. Intraspecific nuclear DNA variation in Drosophila
35. Intraspecific gene genealogies: Trees grafting into networks
36. Genealogies and weak purifying selection
37. Molecular population genetics of the Arabidopsis CAULIFLOWER regulatory gene: Nonneutral evolution and naturally occurring variation in floral homeotic function
38. Self-incompatibility alleles from Physalis: Implications for historical inference from balanced genetic polymorphisms
39. DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
40. Contrasting patterns of nucleotide polymorphism at the alcohol dehydrogenase locus in the outcrossing Arabidopsis lyrata and the selfing Arabidopsis thaliana
41. Congruence and consensus in the cotton tribe (Malvaceae)
42. Properties of statistical tests of neutrality for DNA polymorphism data
43. The tortoise and the hare: Choosing between noncoding plastome and nuclear Adh sequences for phylogenetic reconstruction in a recently diverged plant group
44. Low levels of nucleotide diversity at homoeologous Adh loci in allotetraploid cotton (Gossypium L.)
45. Copy number lability and evolutionary dynamics of the Adh gene family in diploid and tetraploid cotton (Gossypium)
46. Phylogeny, duplication, and intraspecific variation of Adh sequences in New World diploid cottons (Gossypium, Malvaceae)
47. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
48. Low diversity and divergence in the fill gene family of Antirrhinum (Scrophulariaceae)
49. On the number of segregating sites in genetical models without recombination
50. New world tetraploid cottons contain old world cytoplasm
51. Genome evolution in polyploids
52. Phylogenetics of the cotton genus (Gossypium L.): Character-state weighted parsimony analysis of chloroplast DNA restriction site data and its systematic and biogeographic implications
53. Genetic diversity in Gossypium hirsutum and the origin of upland cotton
54. Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium)
55. Genes, jeans, and genomes: Reconstructing the history of cotton
56. Positive Darwinian selection after gene duplication in primate ribonuclease genes