Gene structure identification with MyGV using cDNA evidence and protein homologs to improve ab initio predictions

Bioinformatics

Volumn 18, Issue 5, 2002, Pages 761-762

  Zhu, Wei ^a   Brende, Volker ^a,b  

^a IOWA STATE UNIVERSITY   (United States)

^b Department of Statistics Center for Statistics and Applications in Forensic Evidence Iowa State University 2438 Osborn Dr Ames   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA;

AB INITIO CALCULATION; ARTICLE; COMPUTER PREDICTION; COMPUTER PROGRAM; CONTROLLED STUDY; DNA SPLICING; GENE IDENTIFICATION; GENE LOCATION; GENE STRUCTURE; GENOME; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS; VISUAL INFORMATION;

EID: 0036080355     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/18.5.761     Document Type: Article

References (11)

1. Prediction of complete gene structures in human genomic DNA
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5. The Intronerator: Exploring introns and alternative splicing in Caenorhabditis elegans
6. GeneMark.hmm: New solutions for gene finding
7. Artemis: Sequence visualization and annotation
8. Ab initio gene finding in Drosophila genomic DNA
9. Interpolated Markov models for eukaryotic gene finding
10. Gene structure prediction by spliced alignment of genomic DNA with protein sequences: Increased accuracy by differential splice site scoring
11. Optimal spliced alignment of homologous cDNA to a genomic DNA template