메뉴 건너뛰기




Volumn 11, Issue 8, 2002, Pages 1897-1907

GEM: A Gaussian evolutionary method for predicting protein side-chain conformations

Author keywords

Evolutionary algorithm; Gaussian mutation; Protein structure prediction; Rotamer library; Side chain conformation

Indexed keywords

PROTEIN;

EID: 0036070714     PISSN: 09618368     EISSN: None     Source Type: Journal    
DOI: 10.1110/ps.4940102     Document Type: Article
Times cited : (22)

References (34)
  • 9
    • 0026675799 scopus 로고
    • Fast and simple Monte Carlo algorithm for side-chain optimization in proteins: Application to model building by homology
    • (1992) Proteins , vol.14 , pp. 213-223
    • Holm, L.1    Sander, C.2
  • 12
    • 0028343413 scopus 로고
    • Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy
    • (1994) J. Mol. Biol. , vol.239 , pp. 249-275
    • Koehl, P.1    Delarue, M.2
  • 13
    • 0028140474 scopus 로고
    • Prediction of protein side-chain conformations from local three-dimensional homology relationships
    • (1994) J. Mol. Biol. , vol.235 , pp. 1088-1097
    • Laughton, C.1
  • 14
    • 0028158936 scopus 로고
    • Ligand docking to proteins with discrete side-chain flexibility
    • (1994) J. Mol. Biol. , vol.235 , pp. 345-356
    • Leach, A.R.1
  • 15
    • 0031717560 scopus 로고    scopus 로고
    • Exploring the conformational space of protein side chains using dead-end elimination and the A* algorithm
    • (1998) Proteins , vol.33 , pp. 227-239
    • Leach, A.R.1    Lemon, A.P.2
  • 17
    • 0021095856 scopus 로고
    • Protein folding by constrained energy minimization and molecular dynamics
    • (1983) J. Mol. Biol. , vol.170 , pp. 723-764
    • Levitt, M.1
  • 20
    • 0035896029 scopus 로고    scopus 로고
    • Generalized dead-end elimination algorithms make large-scale protein side-chain structure prediction tractable: Implications for protein design and structural genomics
    • (2001) J. Mol. Biol. , vol.307 , pp. 429-445
    • Looger, L.L.1    Hellinga, H.W.2
  • 21
    • 0033042104 scopus 로고    scopus 로고
    • Improvement of side-chain modeling in proteins with the self-consistent mean field theory method based on an analysis of the factors influencing prediction
    • (1999) Biopolymers , vol.50 , pp. 111-131
    • Mendes, J.1    Soares, C.M.2    Carrondo, M.A.3
  • 23
    • 0023155210 scopus 로고
    • Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes
    • (1987) J. Mol. Biol. , vol.193 , pp. 775-791
    • Ponder, J.W.1    Richards, F.M.2
  • 27
    • 84913539119 scopus 로고
    • A critical comparison of search algorithms applied to the optimization of protein side-chain conformations
    • (1993) J. Comp. Chem. , vol.14 , pp. 790-798
  • 28
    • 0029015770 scopus 로고
    • An evaluation of discrete and continuum search techniques for conformational analysis of side-chains in proteins
    • (1995) Biopolymers , vol.36 , pp. 53-70
    • Väsquez, M.1
  • 32
    • 0002640807 scopus 로고    scopus 로고
    • Integrating adaptive mutations and family competition into genetic algorithms as function optimizer
    • (2000) Soft Computing , vol.4 , pp. 89-102
  • 33
    • 0035300098 scopus 로고    scopus 로고
    • An evolutionary algorithm for the synthesis of multiplayer coatings at oblique light incidence
    • (2001) IEEE/OSA J. Lightwave Technol. , vol.19 , pp. 559-570


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.